Experiment set27IT028 for Pseudomonas putida KT2440

Compare to:

DL-2-Aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.9 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -5.3 -10.8 phosphoserine phosphatase compare
PP_0292 -5.2 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0406 -5.1 -7.4 Nucleotidyltransferase family protein compare
PP_4680 -5.0 -19.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -4.9 -10.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -4.9 -17.4 Carbamoyl-phosphate synthase large chain compare
PP_1362 -4.7 -5.6 pyruvate kinase II compare
PP_1986 -4.7 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_1079 -4.6 -8.3 Ornithine carbamoyltransferase compare
PP_5185 -4.5 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -4.5 -9.6 tryptophan synthase beta chain compare
PP_4679 -4.5 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -4.5 -7.6 Indole-3-glycerol phosphate synthase compare
PP_0949 -4.5 -9.0 putative ATP-binding protein UPF0042 compare
PP_0082 -4.4 -9.4 tryptophan synthase alpha chain compare
PP_4058 -4.3 -15.7 1,4-alpha-glucan branching enzyme compare
PP_3511 -4.3 -11.1 Branched-chain-amino-acid aminotransferase compare
PP_5289 -4.3 -7.1 Acetylglutamate kinase compare
PP_5048 -4.3 -7.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0420 -4.2 -12.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2168 -4.2 -14.4 Transaldolase compare
PP_0421 -4.2 -8.0 Anthranilate phosphoribosyltransferase compare
PP_0967 -4.2 -11.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5075 -4.2 -16.6 glutamate synthase (NADPH) beta subunit compare
PP_1025 -4.1 -13.8 2-isopropylmalate synthase compare
PP_5217 -4.1 -20.9 Polyphosphate kinase compare
PP_0417 -4.1 -19.5 Anthranilate synthase component 1 compare
PP_1655 -4.1 -14.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4710 -4.0 -15.2 tRNA pseudouridine 55 synthase compare
PP_5076 -4.0 -20.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_4678 -4.0 -17.6 Ketol-acid reductoisomerase compare
PP_1088 -4.0 -14.6 Argininosuccinate synthase compare
PP_0966 -4.0 -11.1 Histidinol dehydrogenase compare
PP_1988 -4.0 -12.6 3-isopropylmalate dehydrogenase compare
PP_4724 -3.9 -9.5 Carbamoyl-phosphate synthase small chain compare
PP_0289 -3.9 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_1985 -3.9 -6.6 3-isopropylmalate dehydratase large subunit compare
PP_0290 -3.9 -8.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0965 -3.9 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0691 -3.8 -5.8 Glutamate 5-kinase compare
PP_5155 -3.8 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5014 -3.8 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0340 -3.8 -16.9 Glutamate-ammonia-ligase adenylyltransferase compare
PP_3654 -3.8 -5.5 leucine-responsive regulatory protein compare
PP_4779 -3.8 -18.4 AMP nucleosidase compare
PP_5350 -3.8 -6.7 Transcriptional regulator, RpiR family compare
PP_0184 -3.7 -9.1 Argininosuccinate lyase compare
PP_5058 -3.7 -4.3 Carboxy-terminal-processing protease compare
PP_5128 -3.6 -9.0 Dihydroxy-acid dehydratase compare
PP_0980 -3.6 -9.9 Probable cytosol aminopeptidase compare
PP_1656 -3.6 -14.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_2088 -3.5 -7.2 RNA polymerase sigma factor SigX compare
PP_1233 -3.5 -6.9 sulfurtransferase compare
PP_5047 -3.5 -6.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1022 -3.4 -7.3 glucose 6-phosphate-1-dehydrogenase compare
PP_4890 -3.3 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_4999 -3.3 -2.2 dihydroorotase-like protein compare
PP_5095 -3.2 -2.2 pyrroline-5-carboxylate reductase compare
PP_0735 -3.2 -2.9 molybdopterin-synthase adenylyltransferase compare
PP_5104 -3.1 -8.3 thiazole synthase compare
PP_2214 -3.1 -8.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0725 -3.1 -5.5 conserved hypothetical TPR repeat protein compare
PP_0137 -3.1 -11.3 glutamate/aspartate-proton DAACS transporter compare
PP_4803 -3.1 -10.0 D-alanyl-D-alanine carboxypeptidase compare
PP_0680 -3.0 -17.5 ATP-dependent protease-like protein compare
PP_4922 -3.0 -12.7 Phosphomethylpyrimidine synthase compare
PP_1348 -3.0 -7.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3649 -3.0 -2.9 Transcriptional regulator, GntR family compare
PP_4782 -3.0 -6.4 Phosphomethylpyrimidine kinase compare
PP_3999 -3.0 -9.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5270 -3.0 -8.4 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1067 -2.9 -12.5 Sensor histidine kinase compare
PP_4700 -2.9 -4.0 pantothenate synthetase compare
PP_3539 -2.9 -4.7 putative Transcriptional regulator compare
PP_2215 -2.9 -5.3 acetyl-CoA acetyltransferase compare
PP_4699 -2.9 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1216 -2.9 -3.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5145 -2.9 -21.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2245 -2.8 -9.8 Transcriptional regulator, Cro/CI family compare
PP_4004 -2.8 -4.8 DNA translocase FtsK compare
PP_4480 -2.8 -11.7 arginine N-succinyltransferase, subunit alpha compare
PP_2336 -2.8 -5.5 aconitate hydratase 1 compare
PP_1872 -2.8 -13.6 glutamate-pyruvate aminotransferase compare
PP_2370 -2.7 -3.9 conserved protein of unknown function compare
PP_0787 -2.6 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1231 -2.6 -7.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5337 -2.5 -4.5 LysR family transcriptional regulator compare
PP_1468 -2.5 -3.0 Tyrosine recombinase XerD compare
PP_1217 -2.5 -5.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3662 -2.5 -10.6 conserved protein of unknown function compare
PP_0575 -2.5 -6.3 conserved membrane protein of unknown function compare
PP_1764 -2.5 -7.4 Phosphoglycolate phosphatase 2 compare
PP_1493 -2.5 -4.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2337 -2.5 -4.3 aconitate isomerase compare
PP_2371 -2.3 -8.4 Sulphite reductase hemoprotein, beta subunit compare
PP_3417 -2.3 -6.8 D-gluconate transporter compare
PP_5015 -2.3 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4910 -2.3 -2.2 conserved protein of unknown function compare
PP_0362 -2.3 -12.0 Biotin synthase compare
PP_4364 -2.3 -6.0 putative Anti-sigma F factor antagonist compare
PP_0833 -2.3 -3.4 queuine tRNA-ribosyltransferase compare
PP_4654 -2.2 -12.5 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_1328 -2.2 -4.0 Protein MraZ compare
PP_1142 -2.2 -2.0 conserved protein of unknown function compare
PP_2328 -2.2 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_0547 -2.2 -6.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1224 -2.1 -8.1 periplasmic subunit of the TolQRA transport system compare
PP_3376 -2.1 -5.4 putative phosphonate dehydrogenase compare
PP_3653 -2.1 -4.0 Transporter, LysE family compare
PP_5233 -2.1 -8.9 ammonium transporter AmtB compare
PP_4693 -2.1 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_t49 -2.0 -4.9 tRNA-Met compare
PP_2327 -2.0 -8.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1994 -2.0 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_2820 -2.0 -3.8 HTH-type transcriptional regulator nfxB compare
PP_2348 -2.0 -8.2 Sensor histidine kinase compare
PP_5271 -2.0 -6.3 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_3378 -1.9 -2.5 putative 2-ketogluconokinase compare
PP_1020 -1.9 -1.9 putative glucose-6-phosphate 1-epimerase compare
PP_1066 -1.9 -4.5 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4403 -1.9 -10.5 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_2211 -1.9 -7.0 Transcriptional regulator, AraC family compare
PP_4897 -1.9 -4.6 N-acetylmuramoyl-L-alanine amidase compare
PP_4681 -1.9 -2.6 conserved protein of unknown function compare
PP_5303 -1.9 -5.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4632 -1.8 -8.2 dihydrofolate reductase / dihydromonapterin reductase compare
PP_2402 -1.8 -2.8 putative Sensor histidine kinase compare
PP_5216 -1.8 -3.2 exopolyphosphatase compare
PP_2216 -1.8 -9.8 short-chain acyl-CoA dehydrogenase compare
PP_1071 -1.8 -6.6 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_4401 -1.8 -9.2 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_1110 -1.7 -6.0 serine acetyltransferase compare
PP_0978 -1.7 -2.7 conserved protein of unknown function compare
PP_4944 -1.7 -3.3 Carbamoyltransferase compare
PP_4692 -1.7 -11.4 putative aspartate/tyrosine/aromatic aminotransferase compare
PP_4789 -1.7 -5.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0593 -1.7 -1.5 putative ribosome-binding factor compare
PP_5090 -1.7 -2.4 putative cell division protein compare
PP_5045 -1.6 -3.3 tRNA sulfurtransferase compare
PP_5331 -1.6 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_0597 -1.6 -10.7 methylmalonate-semialdehyde dehydrogenase compare
PP_0185 -1.6 -7.6 Positive alginate biosynthesis regulatory protein compare
PP_2031 -1.6 -2.5 conserved protein of unknown function compare
PP_4722 -1.6 -4.0 Transcription elongation factor GreA compare
PP_5507 -1.6 -3.1 protein of unknown function compare
PP_4487 -1.6 -13.0 acetyl-CoA synthetase compare
PP_1109 -1.6 -11.0 Transcriptional regulator, GntR family compare
PP_0513 -1.5 -2.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1036 -1.5 -4.4 membrane-bound lytic murein transglycosylase F compare
PP_1654 -1.5 -4.4 cysteine synthase B compare
PP_2334 -1.5 -4.1 2-methylisocitrate lyase compare
PP_2029 -1.5 -3.5 von Willebrand factor type A domain protein compare
PP_5183 -1.5 -4.5 glutamylpolyamine synthetase compare
PP_2217 -1.5 -4.8 enoyl-CoA hydratase compare
PP_0291 -1.5 -1.9 conserved protein of unknown function compare
PP_4265 -1.5 -3.3 DNA-binding transcriptional dual regulator compare
PP_4896 -1.4 -7.6 DNA mismatch repair protein MutL compare
PP_4947 -1.4 -11.2 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_5203 -1.4 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_4402 -1.4 -9.7 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_4941 -1.4 -4.6 conserved exported protein of unknown function compare
PP_4984 -1.4 -8.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4653 -1.4 -4.6 adenine:H+ symporter compare
PP_5453 -1.4 -1.7 conserved protein of unknown function compare
PP_4247 -1.4 -2.1 Exonuclease compare
PP_3377 -1.4 -9.7 2-ketogluconate transporter, putative compare
PP_4895 -1.4 -3.1 tRNA dimethylallyltransferase compare
PP_0058 -1.3 -8.7 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_3505 -1.3 -2.7 conserved protein of unknown function compare
PP_4400 -1.3 -5.4 Bkd operon transcriptional regulator compare
PP_5230 -1.3 -3.4 Tyrosine recombinase XerC compare
PP_0364 -1.3 -8.5 pimeloyl-[acp] methyl ester esterase compare
PP_2442 -1.3 -2.0 conserved protein of unknown function, DUF480 family compare
PP_1099 -1.3 -1.9 Cold shock protein CapB compare
PP_2032 -1.3 -4.1 putative ATPase compare
PP_0363 -1.3 -8.7 8-amino-7-oxononanoate synthase compare
PP_1842 -1.2 -5.2 Glutamine amidotransferase, class I compare
PP_1679 -1.2 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1113 -1.2 -7.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4893 -1.2 -6.5 GTPase HflX compare
PP_4143 -1.2 -3.8 conserved protein of unknown function compare
PP_0914 -1.2 -7.6 GGDEF domain protein compare
PP_0262 -1.2 -3.6 conserved protein of unknown function compare
PP_0164 -1.2 -4.3 conserved protein of unknown function compare
PP_5322 -1.1 -3.7 putative metal ion transporter compare
PP_0366 -1.1 -6.1 dethiobiotin synthetase compare
PP_4952 -1.1 -1.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2302 -1.1 -4.3 DNA-binding, ATP-dependent protease compare
PP_0247 -1.1 -6.2 Osmolarity sensor protein EnvZ compare
PP_3380 -1.1 -3.6 2-ketogluconate utilization repressor compare
PP_3035 -1.1 -2.8 conserved protein of unknown function compare
PP_2013 -1.1 -6.3 conserved protein of unknown function compare
PP_0995 -1.1 -4.6 conserved membrane protein of unknown function compare
PP_1381 -1.1 -1.6 4-carboxymuconolactone decarboxylase compare
PP_4008 -1.1 -5.2 ATP-dependent serine protease compare
PP_4505 -1.1 -5.8 Sensor histidine kinase compare
PP_3286 -1.1 -4.2 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5346 -1.1 -5.9 pyruvate carboxylase subunit B compare
PP_4985 -1.1 -5.3 16S rRNA m3U1498 methyltransferase compare


Specific Phenotypes

For 56 genes in this experiment

For nitrogen source DL-2-Aminobutyric acid in Pseudomonas putida KT2440

For nitrogen source DL-2-Aminobutyric acid across organisms