Experiment set27IT025 for Pseudomonas putida KT2440

Compare to:

Hydantoin nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.1 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0846 -5.1 -2.6 DnaK-like molecular chaperone specific for IscU compare
PP_4874 -3.8 -2.2 50S ribosomal protein L9 compare
PP_4004 -3.0 -4.6 DNA translocase FtsK compare
PP_0082 -2.9 -4.6 tryptophan synthase alpha chain compare
PP_0685 -2.2 -1.9 conserved protein of unknown function compare
PP_0401 -2.2 -2.5 Ribosomal RNA small subunit methyltransferase A compare
PP_1986 -2.1 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_2747 -2.0 -2.7 conserved protein of unknown function compare
PP_1654 -2.0 -3.8 cysteine synthase B compare
PP_5048 -2.0 -4.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4997 -1.9 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2309 -1.9 -1.7 conserved protein of unknown function compare
PP_1783 -1.9 -2.4 dTDP-glucose pyrophosphorylase compare
PP_5014 -1.8 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4060 -1.6 -8.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0083 -1.6 -3.7 tryptophan synthase beta chain compare
PP_5289 -1.6 -2.5 Acetylglutamate kinase compare
PP_3481 -1.6 -2.0 conserved exported protein of unknown function compare
PP_4058 -1.6 -6.0 1,4-alpha-glucan branching enzyme compare
PP_5168 -1.5 -3.5 sulfate/thiosulfate import ATP-binding protein compare
PP_5047 -1.5 -3.4 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5232 -1.5 -2.1 conserved protein of unknown function compare
PP_1589 -1.5 -4.7 uridylyltransferase compare
PP_4036 -1.4 -4.6 D-hydantoinase/dihydropyrimidinase compare
PP_1217 -1.4 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1215 -1.4 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_3551 -1.4 -1.6 DNA-binding response regulator, LuxR family compare
PP_1198 -1.4 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4999 -1.4 -1.2 dihydroorotase-like protein compare
PP_4895 -1.3 -2.4 tRNA dimethylallyltransferase compare
PP_0290 -1.3 -4.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3505 -1.3 -2.2 conserved protein of unknown function compare
PP_0627 -1.3 -2.2 conserved protein of unknown function compare
PP_0967 -1.3 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2370 -1.3 -1.7 conserved protein of unknown function compare
PP_0292 -1.2 -1.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -1.2 -3.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5546 -1.2 -1.7 conserved protein of unknown function compare
PP_4680 -1.2 -6.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1938 -1.2 -1.6 conserved protein of unknown function compare
PP_2088 -1.1 -2.8 RNA polymerase sigma factor SigX compare
PP_5456 -1.1 -0.9 conserved protein of unknown function compare
PP_1985 -1.1 -3.0 3-isopropylmalate dehydratase large subunit compare
PP_0421 -1.1 -3.6 Anthranilate phosphoribosyltransferase compare
PP_5487 -1.1 -3.9 conserved protein of unknown function compare
PP_5090 -1.1 -1.0 putative cell division protein compare
PP_4136 -1.1 -1.3 Transcriptional regulator, LuxR family compare
PP_0422 -1.1 -2.2 Indole-3-glycerol phosphate synthase compare
PP_4268 -1.1 -0.9 nucleoid-associated broad specificity regulator compare
PP_4799 -1.0 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5076 -1.0 -7.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_0848 -1.0 -1.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2883 -1.0 -1.7 conserved protein of unknown function compare
PP_4678 -1.0 -6.0 Ketol-acid reductoisomerase compare
PP_3328 -1.0 -1.9 putative Ring-cleaving dioxygenase compare
PP_2168 -1.0 -3.9 Transaldolase compare
PP_5170 -1.0 -2.5 sulfate ABC transporter, inner membrane subunit CysT compare
PP_4035 -1.0 -5.5 putative PydP transporter, NCS1 nucleoside transporter family compare
PP_0417 -1.0 -6.5 Anthranilate synthase component 1 compare
PP_4724 -1.0 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_5075 -1.0 -5.2 glutamate synthase (NADPH) beta subunit compare
PP_4265 -1.0 -2.3 DNA-binding transcriptional dual regulator compare
PP_1128 -1.0 -2.8 OmpA family protein compare
PP_1038 -1.0 -2.0 conserved protein of unknown function compare
PP_4917 -1.0 -1.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1079 -1.0 -3.3 Ornithine carbamoyltransferase compare
PP_4227 -0.9 -1.5 conserved protein of unknown function compare
PP_5083 -0.9 -2.7 putative Type IV pili biogenesis protein PilM compare
PP_3926 -0.9 -1.4 short-chain dehydrogenase compare
PP_4247 -0.9 -1.2 Exonuclease compare
PP_0821 -0.9 -2.3 conserved exported protein of unknown function compare
PP_5097 -0.9 -4.3 homoserine O-acetyltransferase compare
PP_1679 -0.9 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4338 -0.9 -4.2 Chemotaxis histidine kinase CheA compare
PP_1734 -0.9 -1.8 Probable septum site-determining protein MinC compare
PP_4377 -0.9 -2.6 putative Flagellin FlaG compare
PP_3511 -0.9 -3.0 Branched-chain-amino-acid aminotransferase compare
PP_3824 -0.9 -1.9 conserved exported protein of unknown function compare
PP_0963 -0.9 -1.1 putative BolA family protein compare
PP_4005 -0.9 -2.5 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_5106 -0.9 -2.0 conserved inner membrane protein compare
PP_1568 -0.9 -0.9 conserved protein of unknown function compare
PP_5185 -0.9 -3.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5233 -0.9 -3.9 ammonium transporter AmtB compare
PP_5008 -0.9 -1.5 Poly granule-associated protein compare
PP_3211 -0.9 -1.7 ABC transporter, ATP-binding protein compare
PP_1995 -0.9 -3.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -0.9 -2.9 methionine biosynthesis protein MetW compare
PP_2121 -0.9 -2.1 putative Lipoprotein compare
PP_1328 -0.8 -1.1 Protein MraZ compare
PP_4363 -0.8 -4.6 Sensor histidine kinase/response regulator compare
PP_3312 -0.8 -1.1 putative Heat shock protein compare
PP_1988 -0.8 -2.9 3-isopropylmalate dehydrogenase compare
PP_0092 -0.8 -3.1 putative lipoprotein compare
PP_5701 -0.8 -1.3 conserved protein of unknown function compare
PP_0832 -0.8 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5128 -0.8 -3.7 Dihydroxy-acid dehydratase compare
PP_4681 -0.8 -1.8 conserved protein of unknown function compare
PP_0966 -0.8 -4.5 Histidinol dehydrogenase compare
PP_5486 -0.8 -0.8 conserved protein of unknown function compare
PP_3726 -0.8 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_5500 -0.8 -1.5 protein of unknown function compare
PP_0781 -0.8 -1.2 conserved protein of unknown function compare
PP_1216 -0.8 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5628 -0.8 -2.0 conserved protein of unknown function compare
PP_4034 -0.8 -2.4 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_4880 -0.8 -2.6 exoribonuclease R compare
PP_4723 -0.8 -4.2 Carbamoyl-phosphate synthase large chain compare
PP_1827 -0.8 -2.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_5256 -0.8 -1.8 Cyclic nucleotide-binding protein compare
PP_1493 -0.8 -1.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5042 -0.8 -2.6 conserved protein of unknown function compare
PP_5491 -0.8 -1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_0420 -0.7 -4.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3392 -0.7 -0.9 conserved protein of unknown function compare
PP_0241 -0.7 -1.4 Transporter compare
PP_0414 -0.7 -2.2 Polyamine ABC transporter, permease protein compare
PP_0995 -0.7 -2.2 conserved membrane protein of unknown function compare
PP_1576 -0.7 -2.2 putative Immunity protein compare
PP_2568 -0.7 -0.9 Ring-cleaving dioxygenase compare
PP_4479 -0.7 -1.9 arginine N-succinyltransferase, subunit beta compare
PP_0166 -0.7 -4.5 HlyD family secretion protein compare
PP_4236 -0.7 -2.4 putative Thiol:disulfide interchange protein dsbE compare
PP_0965 -0.7 -3.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4961 -0.7 -1.0 putative Lipoprotein compare
PP_3999 -0.7 -2.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2378 -0.7 -1.0 Fe/S biogenesis protein NfuA compare
PP_4223 -0.7 -0.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3411 -0.7 -0.6 conserved protein of unknown function compare
PP_4426 -0.7 -1.5 Amino acid ABC transporter, permease protein compare
PP_0886 -0.7 -1.4 conserved exported protein of unknown function compare
PP_3048 -0.7 -1.0 conserved protein of unknown function compare
PP_0182 -0.7 -1.4 conserved protein of unknown function compare
PP_4824 -0.7 -2.1 Sensor histidine kinase/response regulator compare
PP_1733 -0.6 -1.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_4392 -0.6 -3.6 chemotaxis protein methyltransferase compare
PP_3829 -0.6 -1.7 Molybdenum transport system permease protein ModB compare
PP_5017 -0.6 -0.8 Sec-independent protein translocase protein TatB compare
PP_1826 -0.6 -1.5 Hydrolase, isochorismatase family compare
PP_3248 -0.6 -1.1 Dyp-type peroxidase family protein compare
PP_0313 -0.6 -1.1 putative electron transfer flavoprotein beta subunit compare
PP_0002 -0.6 -2.5 probable chromosome partition protein compare
PP_1778 -0.6 -1.7 Lipopolysaccharide ABC export system, permease protein compare
PP_2472 -0.6 -2.8 putative transcriptional regulator, MerR family compare
PP_1062 -0.6 -1.8 MutT/nudix family protein compare
PP_4705 -0.6 -2.1 Glyoxalase compare
PP_0184 -0.6 -2.1 Argininosuccinate lyase compare
PP_0303 -0.6 -1.8 dehydrocarnitine cleavage enzyme compare
PP_0634 -0.6 -2.0 Fimbrial protein compare
PP_4519 -0.6 -3.6 Agglutination protein compare
PP_4129 -0.6 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1055 -0.6 -0.8 Type II secretion pathway protein GspN compare
PP_4782 -0.6 -1.9 Phosphomethylpyrimidine kinase compare
PP_1946 -0.6 -2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1021 -0.6 -2.6 DNA-binding transcriptional regulator compare
PP_0893 -0.6 -1.8 ThiJ/PfpI family protein compare
PP_4669 -0.6 -1.3 OmpA family protein compare
PP_4340 -0.6 -1.3 response regulator for chemotactic signal transduction compare
PP_3098 -0.6 -0.7 conserved protein of unknown function compare
PP_5181 -0.6 -3.5 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_2768 -0.6 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1088 -0.6 -3.0 Argininosuccinate synthase compare
PP_4679 -0.6 -2.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1397 -0.6 -1.4 conserved protein of unknown function compare
PP_3233 -0.6 -1.8 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_5448 -0.6 -1.0 conserved protein of unknown function compare
PP_4693 -0.6 -1.9 RNA polymerase-binding transcription factor DksA compare
PP_0165 -0.6 -4.1 GGDEF domain protein compare
PP_3052 -0.6 -0.6 conserved protein of unknown function compare
PP_2737 -0.6 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0439 -0.6 -1.7 conserved protein of unknown function compare
PP_1789 -0.6 -1.9 Hydrolase, haloacid dehalogenase-like family compare
PP_5422 -0.6 -2.1 hypothetical protein compare
PP_4317 -0.6 -0.8 conserved protein of unknown function compare
PP_5654 -0.5 -1.1 putative phosphotriesterase compare
PP_4560 -0.5 -1.6 putative Ribonuclease BN compare
PP_1609 -0.5 -1.3 conserved protein of unknown function compare
PP_4287 -0.5 -1.8 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
PP_4989 -0.5 -1.1 Protein PilJ compare
PP_1344 -0.5 -0.5 conserved protein of unknown function compare
PP_0086 -0.5 -1.5 conserved protein of unknown function compare
PP_5704 -0.5 -1.6 conserved protein of unknown function compare
PP_2396 -0.5 -1.8 conserved exported protein of unknown function compare
PP_1683 -0.5 -1.4 Transcriptional regulator, MarR family compare
PP_3519 -0.5 -0.6 putative Lipoprotein compare
PP_1662 -0.5 -1.4 conserved protein of unknown function compare
PP_5315 -0.5 -2.1 Rubredoxin-1 compare
PP_2955 -0.5 -2.3 Magnesium/cobalt transporter, CorA family compare
PP_0824 -0.5 -2.5 phosphonate transport system-binding protein compare
PP_1635 -0.5 -1.4 DNA-binding response regulator compare
PP_1825 -0.5 -1.6 conserved exported protein of unknown function compare
PP_2137 -0.5 -1.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_1477 -0.5 -1.9 ssDNA-specific exonuclease RecJ compare
PP_1564 -0.5 -1.7 conserved exported protein of unknown function compare
PP_5541 -0.5 -2.2 conserved protein of unknown function compare
PP_3649 -0.5 -1.3 Transcriptional regulator, GntR family compare
PP_5179 -0.5 -2.6 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_0533 -0.5 -1.6 histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Hydantoin across organisms