Experiment set27IT024 for Pseudomonas putida KT2440

Compare to:

Hydantoin nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0083 -3.8 -7.3 tryptophan synthase beta chain compare
PP_5453 -3.5 -3.3 conserved protein of unknown function compare
PP_5048 -3.4 -6.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0082 -2.9 -6.6 tryptophan synthase alpha chain compare
PP_0292 -2.5 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4808 -2.5 -3.3 23S rRNA m3psi1915 methyltransferase compare
PP_2088 -2.4 -5.2 RNA polymerase sigma factor SigX compare
PP_5047 -2.4 -6.4 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0290 -2.4 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0848 -2.3 -3.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1986 -2.3 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_1217 -2.3 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4122 -2.1 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5075 -2.1 -8.8 glutamate synthase (NADPH) beta subunit compare
PP_1589 -2.0 -7.5 uridylyltransferase compare
PP_5076 -2.0 -11.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_0691 -2.0 -3.8 Glutamate 5-kinase compare
PP_1215 -1.9 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_0846 -1.9 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_1328 -1.9 -2.5 Protein MraZ compare
PP_3098 -1.8 -1.8 conserved protein of unknown function compare
PP_5014 -1.8 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4058 -1.7 -7.7 1,4-alpha-glucan branching enzyme compare
PP_4678 -1.7 -9.3 Ketol-acid reductoisomerase compare
PP_1985 -1.7 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_2633 -1.7 -2.5 conserved protein of unknown function compare
PP_3903 -1.6 -2.2 conserved protein of unknown function compare
PP_1995 -1.6 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5128 -1.6 -5.1 Dihydroxy-acid dehydratase compare
PP_4680 -1.5 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -1.5 -7.1 Histidinol dehydrogenase compare
PP_4060 -1.5 -8.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0289 -1.5 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_3511 -1.5 -4.0 Branched-chain-amino-acid aminotransferase compare
PP_0293 -1.4 -1.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4679 -1.4 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1216 -1.4 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1609 -1.4 -3.2 conserved protein of unknown function compare
PP_2121 -1.4 -1.4 putative Lipoprotein compare
PP_3649 -1.4 -2.1 Transcriptional regulator, GntR family compare
PP_0967 -1.4 -7.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -1.4 -3.5 Ornithine carbamoyltransferase compare
PP_0421 -1.3 -4.6 Anthranilate phosphoribosyltransferase compare
PP_1988 -1.3 -5.2 3-isopropylmalate dehydrogenase compare
PP_1713 -1.3 -2.4 Transcriptional regulator PcaQ compare
PP_5295 -1.3 -1.6 conserved protein of unknown function compare
PP_5097 -1.3 -7.9 homoserine O-acetyltransferase compare
PP_0422 -1.3 -4.4 Indole-3-glycerol phosphate synthase compare
PP_2847 -1.3 -1.8 Urease accessory protein UreJ compare
PP_1812 -1.3 -1.9 conserved protein of unknown function compare
PP_4273 -1.3 -1.7 Transcriptional regulator, MerR family compare
PP_4338 -1.3 -5.6 Chemotaxis histidine kinase CheA compare
PP_5571 -1.2 -1.6 conserved protein of unknown function compare
PP_5185 -1.2 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3258 -1.2 -2.6 conserved protein of unknown function compare
PP_0420 -1.2 -6.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1679 -1.2 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4034 -1.2 -4.4 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_4199 -1.2 -1.2 putative Lipoprotein compare
PP_0417 -1.2 -7.6 Anthranilate synthase component 1 compare
PP_4999 -1.1 -1.3 dihydroorotase-like protein compare
PP_1198 -1.1 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3392 -1.1 -1.3 conserved protein of unknown function compare
PP_4943 -1.1 -1.7 putative Glycosyl transferase compare
PP_1654 -1.1 -2.6 cysteine synthase B compare
PP_4004 -1.1 -2.4 DNA translocase FtsK compare
PP_4035 -1.1 -5.5 putative PydP transporter, NCS1 nucleoside transporter family compare
PP_5274 -1.1 -1.2 conserved protein of unknown function compare
PP_4787 -1.0 -2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1632 -1.0 -0.9 conserved protein of unknown function compare
PP_0965 -1.0 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0833 -1.0 -1.7 queuine tRNA-ribosyltransferase compare
PP_3726 -1.0 -1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_4792 -1.0 -2.5 conserved exported protein of unknown function compare
PP_4364 -1.0 -3.2 putative Anti-sigma F factor antagonist compare
PP_5546 -1.0 -1.0 conserved protein of unknown function compare
PP_5289 -1.0 -2.5 Acetylglutamate kinase compare
PP_2168 -1.0 -4.8 Transaldolase compare
PP_1548 -1.0 -2.2 conserved protein of unknown function compare
PP_4340 -1.0 -2.3 response regulator for chemotactic signal transduction compare
PP_4036 -1.0 -4.1 D-hydantoinase/dihydropyrimidinase compare
PP_0610 -1.0 -1.3 conserved exported protein of unknown function compare
PP_1045 -1.0 -2.0 Type II secretion pathway protein XcpP compare
PP_4993 -1.0 -2.0 Glutathione synthetase compare
PP_1999 -1.0 -1.2 membrane protein required for colicin V production compare
PP_4505 -1.0 -3.6 Sensor histidine kinase compare
PP_5098 -0.9 -3.4 methionine biosynthesis protein MetW compare
PP_4528 -0.9 -1.7 conserved protein of unknown function compare
PP_0832 -0.9 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4964 -0.9 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1629 -0.9 -2.5 Protein RecA compare
PP_4696 -0.9 -2.8 Nitrogen regulation protein NR(I) compare
PP_2001 -0.9 -4.7 O-succinylhomoserine sulfhydrylase compare
PP_0874 -0.9 -1.9 conserved protein of unknown function compare
PP_1322 -0.9 -1.4 putative Lipoprotein compare
PP_2328 -0.9 -3.0 Phosphoadenosine phosphosulfate reductase compare
PP_t12 -0.9 -0.9 tRNA-Thr compare
PP_2030 -0.9 -2.4 conserved protein of unknown function compare
PP_1387 -0.9 -3.1 Probable HTH-type transcriptional regulator TtgR compare
PP_5575 -0.9 -1.8 conserved protein of unknown function compare
PP_3505 -0.9 -1.3 conserved protein of unknown function compare
PP_0888 -0.9 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_0653 -0.9 -1.3 conserved protein of unknown function compare
PP_4180 -0.9 -2.8 conserved protein of unknown function compare
PP_5441 -0.9 -1.6 protein of unknown function compare
PP_4392 -0.8 -3.0 chemotaxis protein methyltransferase compare
PP_4693 -0.8 -2.5 RNA polymerase-binding transcription factor DksA compare
PP_5233 -0.8 -4.2 ammonium transporter AmtB compare
PP_1493 -0.8 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2371 -0.8 -2.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5227 -0.8 -3.2 diaminopimelate decarboxylase compare
PP_0401 -0.8 -1.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1088 -0.8 -4.2 Argininosuccinate synthase compare
PP_1479 -0.8 -2.2 HicB protein compare
PP_2132 -0.8 -2.0 Universal stress protein compare
PP_1826 -0.8 -1.8 Hydrolase, isochorismatase family compare
PP_0303 -0.8 -2.2 dehydrocarnitine cleavage enzyme compare
PP_5598 -0.8 -2.4 conserved protein of unknown function compare
PP_1042 -0.8 -2.4 Type II secretion system protein K compare
PP_4406 -0.7 -1.9 conserved protein of unknown function compare
PP_4824 -0.7 -2.8 Sensor histidine kinase/response regulator compare
PP_0673 -0.7 -0.9 conserved protein of unknown function compare
PP_4871 -0.7 -2.5 putative lysine decarboxylase family protein compare
PP_4482 -0.7 -1.7 Transcriptional regulator, AraC family compare
PP_4671 -0.7 -2.8 conserved exported protein of unknown function compare
PP_2345 -0.7 -1.7 conserved exported protein of unknown function compare
PP_4531 -0.7 -2.5 conserved exported protein of unknown function compare
PP_4723 -0.7 -4.6 Carbamoyl-phosphate synthase large chain compare
PP_0719 -0.7 -0.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1709 -0.7 -2.7 Fumarylacetoacetate hydrolase family protein compare
PP_5528 -0.7 -1.6 conserved protein of unknown function compare
PP_5143 -0.7 -2.0 conserved membrane protein of unknown function compare
PP_2668 -0.7 -1.2 ABC efflux transporter, ATP-binding protein compare
PP_0566 -0.7 -0.8 translation-related factor compare
PP_0855 -0.7 -1.8 conserved protein of unknown function compare
PP_4227 -0.7 -1.3 conserved protein of unknown function compare
PP_5156 -0.7 -2.5 conserved exported protein of unknown function compare
PP_4782 -0.7 -2.4 Phosphomethylpyrimidine kinase compare
PP_1468 -0.7 -0.9 Tyrosine recombinase XerD compare
PP_4253 -0.7 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_2643 -0.7 -2.7 aromatic acid chemoreceptor compare
PP_5507 -0.7 -1.7 protein of unknown function compare
PP_0086 -0.7 -1.6 conserved protein of unknown function compare
PP_5015 -0.7 -1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4890 -0.7 -1.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_3579 -0.7 -2.9 conserved membrane protein of unknown function compare
PP_t10 -0.7 -1.2 tRNA-Pro compare
PP_4268 -0.7 -0.4 nucleoid-associated broad specificity regulator compare
PP_5346 -0.7 -2.9 pyruvate carboxylase subunit B compare
PP_2816 -0.6 -1.3 putative Transcriptional regulator NfxB compare
PP_2348 -0.6 -2.2 Sensor histidine kinase compare
PP_1038 -0.6 -1.5 conserved protein of unknown function compare
PP_3481 -0.6 -1.1 conserved exported protein of unknown function compare
PP_3254 -0.6 -2.5 putative Nucleosidase compare
PP_2998 -0.6 -3.0 2-dehydropantoate 2-reductase compare
PP_1502 -0.6 -2.9 OmpA family protein compare
PP_1662 -0.6 -1.6 conserved protein of unknown function compare
PP_4418 -0.6 -2.1 conserved protein of unknown function compare
PP_5625 -0.6 -2.2 conserved protein of unknown function compare
PP_5313 -0.6 -0.9 DNA-binding protein HU-alpha compare
PP_3060 -0.6 -2.8 putative tail sheath protein compare
PP_0184 -0.6 -2.1 Argininosuccinate lyase compare
PP_3730 -0.6 -1.4 Transcriptional regulatory protein AruR compare
PP_2833 -0.6 -2.7 Transcriptional regulator, LysR family compare
PP_2087 -0.6 -1.2 CmpX protein compare
PP_4895 -0.6 -1.2 tRNA dimethylallyltransferase compare
PP_0801 -0.6 -0.8 conserved exported protein of unknown function compare
PP_4513 -0.6 -2.4 conserved protein of unknown function compare
PP_2794 -0.6 -0.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2721 -0.6 -2.4 conserved membrane protein of unknown function compare
PP_4754 -0.6 -2.9 Transcriptional regulator, TetR family compare
PP_5480 -0.6 -1.9 conserved exported protein of unknown function compare
PP_4363 -0.6 -3.4 Sensor histidine kinase/response regulator compare
PP_4207 -0.6 -1.7 conserved protein of unknown function compare
PP_2309 -0.6 -0.9 conserved protein of unknown function compare
PP_2137 -0.6 -0.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_5303 -0.6 -1.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0220 -0.6 -1.8 methionine import ATP-binding protein metN2 compare
PP_1731 -0.6 -1.5 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_3942 -0.6 -1.8 maleate isomerase compare
PP_0244 -0.6 -1.4 conserved protein of unknown function compare
PP_1021 -0.6 -2.5 DNA-binding transcriptional regulator compare
PP_4591 -0.5 -1.5 Ribonuclease D compare
PP_5557 -0.5 -1.4 protein of unknown function compare
PP_4814 -0.5 -1.4 ATP-dependent protease La domain protein compare
PP_0593 -0.5 -0.7 putative ribosome-binding factor compare
PP_2658 -0.5 -2.0 phosphate ABC transporter compare
PP_1255 -0.5 -1.4 putative cis-4-hydroxy-D-proline oxidase compare
PP_4937 -0.5 -1.2 toluene tolerance protein compare
PP_5732 -0.5 -2.5 putative metal-binding protein compare
PP_1987 -0.5 -1.3 Methlytransferase, UbiE/COQ5 family compare
PP_2738 -0.5 -2.0 putative Transcriptional regulator compare
PP_0440 -0.5 -1.5 Elongation factor Tu-A compare
PP_0087 -0.5 -1.4 conserved exported protein of unknown function compare
PP_1167 -0.5 -1.6 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_4477 -0.5 -2.1 N-succinylarginine dihydrolase compare
PP_1025 -0.5 -3.2 2-isopropylmalate synthase compare
PP_t49 -0.5 -1.1 tRNA-Met compare
PP_5569 -0.5 -1.6 protein of unknown function of phage origin compare
PP_4981 -0.5 -1.2 polyisoprene-binding protein, acidic stress response factor compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Hydantoin in Pseudomonas putida KT2440

For nitrogen source Hydantoin across organisms