Experiment set27IT023 for Pseudomonas putida KT2440

Compare to:

2,6-diaminopimelic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -4.7 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1778 -3.2 -6.4 Lipopolysaccharide ABC export system, permease protein compare
PP_4999 -3.1 -2.1 dihydroorotase-like protein compare
PP_5095 -3.0 -2.1 pyrroline-5-carboxylate reductase compare
PP_5048 -2.9 -6.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0083 -2.8 -7.8 tryptophan synthase beta chain compare
PP_0082 -2.7 -5.9 tryptophan synthase alpha chain compare
PP_1779 -2.7 -7.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4004 -2.7 -4.7 DNA translocase FtsK compare
PP_4058 -2.5 -11.1 1,4-alpha-glucan branching enzyme compare
PP_1215 -2.3 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_0290 -2.3 -8.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0289 -2.1 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1988 -2.0 -8.3 3-isopropylmalate dehydrogenase compare
PP_4680 -2.0 -13.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -2.0 -8.3 Ornithine carbamoyltransferase compare
PP_1198 -2.0 -3.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1986 -2.0 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_4723 -1.9 -10.9 Carbamoyl-phosphate synthase large chain compare
PP_0292 -1.9 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0417 -1.8 -13.2 Anthranilate synthase component 1 compare
PP_4678 -1.8 -12.0 Ketol-acid reductoisomerase compare
PP_0422 -1.8 -3.8 Indole-3-glycerol phosphate synthase compare
PP_5155 -1.8 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1088 -1.7 -9.6 Argininosuccinate synthase compare
PP_4943 -1.7 -2.8 putative Glycosyl transferase compare
PP_1994 -1.7 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_1995 -1.7 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -1.7 -9.5 Transaldolase compare
PP_3511 -1.6 -6.8 Branched-chain-amino-acid aminotransferase compare
PP_0421 -1.6 -6.7 Anthranilate phosphoribosyltransferase compare
PP_5076 -1.6 -12.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_0691 -1.6 -3.2 Glutamate 5-kinase compare
PP_4060 -1.6 -11.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0967 -1.5 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0420 -1.5 -9.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4724 -1.5 -5.4 Carbamoyl-phosphate synthase small chain compare
PP_4364 -1.5 -6.4 putative Anti-sigma F factor antagonist compare
PP_5185 -1.4 -5.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -1.4 -7.8 Dihydroxy-acid dehydratase compare
PP_1328 -1.4 -3.3 Protein MraZ compare
PP_0184 -1.4 -5.1 Argininosuccinate lyase compare
PP_5097 -1.4 -9.1 homoserine O-acetyltransferase compare
PP_5289 -1.4 -3.5 Acetylglutamate kinase compare
PP_1493 -1.4 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1985 -1.4 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_4363 -1.3 -7.3 Sensor histidine kinase/response regulator compare
PP_4679 -1.3 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5453 -1.3 -1.7 conserved protein of unknown function compare
PP_1216 -1.3 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5075 -1.3 -8.8 glutamate synthase (NADPH) beta subunit compare
PP_2088 -1.3 -4.1 RNA polymerase sigma factor SigX compare
PP_5047 -1.2 -4.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0846 -1.2 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_1589 -1.2 -5.9 uridylyltransferase compare
PP_5098 -1.2 -6.5 methionine biosynthesis protein MetW compare
PP_0566 -1.2 -1.5 translation-related factor compare
PP_0966 -1.2 -6.8 Histidinol dehydrogenase compare
PP_2328 -1.2 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_0185 -1.1 -7.4 Positive alginate biosynthesis regulatory protein compare
PP_4909 -1.1 -5.6 phosphoserine phosphatase compare
PP_1734 -1.1 -1.9 Probable septum site-determining protein MinC compare
PP_5014 -1.1 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_4701 -1.1 -1.3 glucose-6-phosphate isomerase compare
PP_4828 -1.0 -1.6 Precorrin-8X methylmutase compare
PP_2001 -1.0 -5.9 O-succinylhomoserine sulfhydrylase compare
PP_0383 -1.0 -7.0 Lysine 2-monooxygenase compare
PP_1468 -1.0 -2.8 Tyrosine recombinase XerD compare
PP_1654 -1.0 -2.4 cysteine synthase B compare
PP_4693 -1.0 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_1362 -1.0 -3.0 pyruvate kinase II compare
PP_4890 -1.0 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0225 -1.0 -3.4 sulfur compound ABC transporter - ATP-binding subunit compare
PP_1217 -1.0 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5217 -0.9 -8.3 Polyphosphate kinase compare
PP_1713 -0.9 -2.5 Transcriptional regulator PcaQ compare
PP_4910 -0.9 -1.7 conserved protein of unknown function compare
PP_4340 -0.9 -2.3 response regulator for chemotactic signal transduction compare
PP_4338 -0.9 -6.0 Chemotaxis histidine kinase CheA compare
PP_4098 -0.9 -1.4 UvrABC system protein C compare
PP_1022 -0.9 -3.8 glucose 6-phosphate-1-dehydrogenase compare
PP_2348 -0.9 -3.4 Sensor histidine kinase compare
PP_4848 -0.9 -2.8 Curved DNA-binding protein compare
PP_1025 -0.9 -6.1 2-isopropylmalate synthase compare
PP_0227 -0.8 -5.6 periplasmic cystine-binding protein compare
PP_4505 -0.8 -4.2 Sensor histidine kinase compare
PP_4895 -0.8 -1.9 tRNA dimethylallyltransferase compare
PP_1300 -0.8 -3.3 putative amino acid ABC transporter - ATP-binding subunit compare
PP_2402 -0.8 -1.7 putative Sensor histidine kinase compare
PP_0226 -0.8 -5.0 sulfur compound ABC transporter - permease subunit compare
PP_5233 -0.8 -4.8 ammonium transporter AmtB compare
PP_4143 -0.8 -3.3 conserved protein of unknown function compare
PP_2370 -0.7 -2.0 conserved protein of unknown function compare
PP_5230 -0.7 -2.3 Tyrosine recombinase XerC compare
PP_3484 -0.7 -2.1 Response regulator receiver protein compare
PP_4824 -0.7 -3.5 Sensor histidine kinase/response regulator compare
PP_5227 -0.7 -2.6 diaminopimelate decarboxylase compare
PP_0063 -0.7 -2.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4392 -0.7 -4.3 chemotaxis protein methyltransferase compare
PP_2327 -0.7 -3.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2793 -0.7 -1.6 Acyl-CoA dehydrogenase family protein compare
PP_0643 -0.7 -2.3 protein of unknown function compare
PP_5339 -0.7 -2.3 transcriptional regulator, ornithine utilization compare
PP_2302 -0.7 -2.8 DNA-binding, ATP-dependent protease compare
PP_1656 -0.7 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_3241 -0.7 -1.2 conserved exported protein of unknown function compare
PP_1679 -0.7 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1553 -0.7 -1.4 conserved protein of unknown function compare
PP_2307 -0.7 -0.9 conserved protein of unknown function compare
PP_4799 -0.7 -0.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5717 -0.6 -1.5 conserved protein of unknown function compare
PP_4479 -0.6 -3.2 arginine N-succinyltransferase, subunit beta compare
PP_5393 -0.6 -1.2 putative metal-binding chaperone compare
PP_4424 -0.6 -2.0 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5598 -0.6 -1.7 conserved protein of unknown function compare
PP_2880 -0.6 -1.9 Transcriptional regulator, TetR family compare
PP_4696 -0.6 -2.3 Nitrogen regulation protein NR(I) compare
PP_3821 -0.6 -3.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0735 -0.6 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5491 -0.6 -2.3 conserved protein of unknown function with SEC-C motif domain compare
PP_1408 -0.6 -4.2 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_0673 -0.6 -1.3 conserved protein of unknown function compare
PP_4226 -0.6 -2.5 conserved protein of unknown function compare
PP_0677 -0.6 -1.9 putative Lipoprotein compare
PP_0401 -0.6 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_5557 -0.6 -1.8 protein of unknown function compare
PP_4977 -0.6 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_0214 -0.6 -3.0 4-aminobutyrate aminotransferase compare
PP_4477 -0.6 -2.8 N-succinylarginine dihydrolase compare
PP_1439 -0.6 -1.5 conserved exported protein of unknown function compare
PP_3508 -0.6 -1.6 Protein CobW compare
PP_3919 -0.5 -1.6 conserved protein of unknown function compare
PP_0790 -0.5 -3.4 Inner membrane protein AmpE compare
PP_5480 -0.5 -2.2 conserved exported protein of unknown function compare
PP_5600 -0.5 -1.5 conserved protein of unknown function compare
PP_0129 -0.5 -4.3 GGDEF domain protein compare
PP_4069 -0.5 -2.2 conserved protein of unknown function compare
PP_5465 -0.5 -3.1 conserved protein of unknown function compare
PP_2375 -0.5 -4.3 cobalamin-dependent methionine synthase compare
PP_4332 -0.5 -2.2 Chemotaxis protein CheW compare
PP_3999 -0.5 -3.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4870 -0.5 -2.0 Azurin compare
PP_2253 -0.5 -1.4 Transcriptional regulator, GntR family compare
PP_2846 -0.5 -1.2 urease accessory protein compare
PP_4942 -0.5 -1.2 conserved protein of unknown function compare
PP_0995 -0.5 -2.8 conserved membrane protein of unknown function compare
PP_2785 -0.5 -2.5 conserved exported protein of unknown function compare
PP_1122 -0.5 -0.9 OmpA family protein compare
PP_4482 -0.5 -1.7 Transcriptional regulator, AraC family compare
PP_4254 -0.5 -1.0 conserved protein of unknown function compare
PP_0965 -0.5 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3506 -0.5 -2.2 Magnesium chelatase, subunit ChII compare
PP_t13 -0.5 -1.6 tRNA-Lys compare
PP_3398 -0.5 -1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1430 -0.5 -3.0 putative periplasmic serine endoprotease DegP-like compare
PP_5247 -0.5 -1.9 conserved protein of unknown function compare
PP_3833 -0.5 -1.9 Response regulator compare
PP_0634 -0.5 -2.3 Fimbrial protein compare
PP_4499 -0.5 -2.0 putative maturation enzyme compare
PP_5024 -0.5 -2.7 Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_0630 -0.5 -0.8 DNA gyrase inhibitor YacG compare
PP_1678 -0.5 -1.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4180 -0.5 -1.5 conserved protein of unknown function compare
PP_2326 -0.5 -3.2 Universal stress protein compare
PP_5504 -0.5 -2.8 conserved protein of unknown function compare
PP_1322 -0.5 -1.1 putative Lipoprotein compare
PP_2950 -0.4 -1.3 conserved protein of unknown function compare
PP_3333 -0.4 -1.6 conserved protein of unknown function compare
PP_1224 -0.4 -2.0 periplasmic subunit of the TolQRA transport system compare
PP_2714 -0.4 -2.8 Sensor histidine kinase compare
PP_1970 -0.4 -2.4 putative Lipoprotein compare
PP_1825 -0.4 -1.8 conserved exported protein of unknown function compare
PP_2401 -0.4 -2.2 conserved membrane protein of unknown function compare
PP_3312 -0.4 -0.9 putative Heat shock protein compare
PP_0195 -0.4 -1.5 conserved protein of unknown function compare
PP_4561 -0.4 -0.7 stress response protein compare
PP_3531 -0.4 -1.8 conserved exported protein of unknown function compare
PP_4387 -0.4 -1.7 conserved exported protein of unknown function compare
PP_1055 -0.4 -0.8 Type II secretion pathway protein GspN compare
PP_3081 -0.4 -1.4 conserved protein of unknown function compare
PP_0536 -0.4 -1.5 conserved protein of unknown function compare
PP_1681 -0.4 -3.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1575 -0.4 -1.2 conserved protein of unknown function compare
PP_5505 -0.4 -1.6 conserved transmembrane protein of unknown function compare
PP_2899 -0.4 -0.6 conserved exported protein of unknown function compare
PP_4961 -0.4 -0.5 putative Lipoprotein compare
PP_1878 -0.4 -2.8 conserved protein of unknown function compare
PP_0532 -0.4 -2.3 conserved exported protein of unknown function compare
PP_3978 -0.4 -2.0 conserved protein of unknown function compare
PP_3376 -0.4 -2.4 putative phosphonate dehydrogenase compare
PP_5313 -0.4 -0.8 DNA-binding protein HU-alpha compare
PP_2087 -0.4 -0.9 CmpX protein compare
PP_t64 -0.4 -1.1 tRNA-Gly compare
PP_5621 -0.4 -1.3 protein of unknown function compare
PP_5509 -0.4 -2.2 conserved exported protein of unknown function compare
PP_2580 -0.4 -1.6 conserved protein of unknown function compare
PP_2371 -0.4 -2.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5589 -0.4 -1.5 protein of unknown function containing Rhs repeat-associated core domain compare
PP_0364 -0.4 -2.9 pimeloyl-[acp] methyl ester esterase compare
PP_5243 -0.4 -1.3 putative hydrolase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source 2,6-diaminopimelic acid in Pseudomonas putida KT2440

For nitrogen source 2,6-diaminopimelic acid across organisms