Experiment set27IT021 for Pseudomonas putida KT2440

Compare to:

Caprolactam nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0082 -4.6 -8.8 tryptophan synthase alpha chain compare
PP_0083 -4.2 -9.3 tryptophan synthase beta chain compare
PP_1986 -4.0 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_0292 -3.9 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4058 -3.9 -14.6 1,4-alpha-glucan branching enzyme compare
PP_0420 -3.9 -13.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0293 -3.9 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -3.9 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_4678 -3.8 -16.9 Ketol-acid reductoisomerase compare
PP_1995 -3.7 -12.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -3.7 -18.6 Anthranilate synthase component 1 compare
PP_2168 -3.7 -14.1 Transaldolase compare
PP_4680 -3.5 -16.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -3.5 -9.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -3.4 -8.6 Argininosuccinate lyase compare
PP_0966 -3.3 -10.2 Histidinol dehydrogenase compare
PP_4679 -3.3 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -3.2 -13.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -3.2 -9.3 Branched-chain-amino-acid aminotransferase compare
PP_1988 -3.2 -8.6 3-isopropylmalate dehydrogenase compare
PP_0691 -3.1 -5.6 Glutamate 5-kinase compare
PP_5097 -3.1 -14.2 homoserine O-acetyltransferase compare
PP_4724 -3.1 -7.0 Carbamoyl-phosphate synthase small chain compare
PP_0422 -3.1 -7.7 Indole-3-glycerol phosphate synthase compare
PP_0421 -3.1 -9.7 Anthranilate phosphoribosyltransferase compare
PP_5185 -3.0 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4723 -3.0 -13.7 Carbamoyl-phosphate synthase large chain compare
PP_4890 -3.0 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5048 -2.9 -6.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1778 -2.9 -6.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1079 -2.9 -9.7 Ornithine carbamoyltransferase compare
PP_5128 -2.8 -7.7 Dihydroxy-acid dehydratase compare
PP_5289 -2.8 -6.5 Acetylglutamate kinase compare
PP_2371 -2.8 -8.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1088 -2.8 -11.9 Argininosuccinate synthase compare
PP_0289 -2.8 -8.2 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -2.7 -8.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1216 -2.7 -4.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4364 -2.7 -8.3 putative Anti-sigma F factor antagonist compare
PP_5076 -2.6 -17.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_5014 -2.6 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1779 -2.6 -7.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2001 -2.5 -10.2 O-succinylhomoserine sulfhydrylase compare
PP_5075 -2.5 -11.8 glutamate synthase (NADPH) beta subunit compare
PP_1025 -2.5 -11.1 2-isopropylmalate synthase compare
PP_2088 -2.5 -6.3 RNA polymerase sigma factor SigX compare
PP_0339 -2.4 -5.1 Pyruvate dehydrogenase E1 component compare
PP_5098 -2.4 -8.2 methionine biosynthesis protein MetW compare
PP_4696 -2.4 -6.6 Nitrogen regulation protein NR(I) compare
PP_0965 -2.4 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2302 -2.3 -8.2 DNA-binding, ATP-dependent protease compare
PP_4909 -2.3 -8.4 phosphoserine phosphatase compare
PP_5155 -2.2 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1589 -2.0 -7.4 uridylyltransferase compare
PP_2370 -1.8 -3.5 conserved protein of unknown function compare
PP_2433 -1.8 -3.1 conserved protein of unknown function compare
PP_1231 -1.7 -5.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4004 -1.6 -4.1 DNA translocase FtsK compare
PP_4060 -1.6 -11.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4693 -1.6 -4.6 RNA polymerase-binding transcription factor DksA compare
PP_4999 -1.6 -1.8 dihydroorotase-like protein compare
PP_1198 -1.6 -4.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4143 -1.5 -5.3 conserved protein of unknown function compare
PP_5338 -1.4 -2.1 aspartate ammonia-lyase compare
PP_0914 -1.4 -8.4 GGDEF domain protein compare
PP_0949 -1.4 -6.4 putative ATP-binding protein UPF0042 compare
PP_2402 -1.4 -2.6 putative Sensor histidine kinase compare
PP_5047 -1.4 -4.4 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3649 -1.3 -2.9 Transcriptional regulator, GntR family compare
PP_2322 -1.3 -6.0 Major outer membrane lipoprotein compare
PP_5090 -1.3 -2.8 putative cell division protein compare
PP_4120 -1.3 -3.6 NADH-quinone oxidoreductase subunit B compare
PP_4338 -1.3 -6.9 Chemotaxis histidine kinase CheA compare
PP_4593 -1.3 -1.3 conserved protein of unknown function compare
PP_5072 -1.2 -8.6 efflux transporter compare
PP_4098 -1.1 -1.5 UvrABC system protein C compare
PP_4700 -1.1 -2.7 pantothenate synthetase compare
PP_1493 -1.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0787 -1.1 -2.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5015 -1.1 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0127 -1.1 -4.8 Thiol:disulfide interchange protein compare
PP_1099 -1.1 -2.3 Cold shock protein CapB compare
PP_2328 -1.1 -4.9 Phosphoadenosine phosphosulfate reductase compare
PP_5145 -1.1 -9.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4964 -1.0 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_3821 -1.0 -5.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5227 -1.0 -3.8 diaminopimelate decarboxylase compare
PP_2087 -1.0 -2.5 CmpX protein compare
PP_4124 -1.0 -3.5 NADH-quinone oxidoreductase subunit G compare
PP_5233 -1.0 -5.9 ammonium transporter AmtB compare
PP_1428 -1.0 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_4392 -1.0 -6.3 chemotaxis protein methyltransferase compare
PP_2327 -1.0 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4121 -1.0 -3.5 NADH-quinone oxidoreductase subunit C/D compare
PP_2320 -0.9 -7.0 conserved exported protein of unknown function compare
PP_1468 -0.9 -2.5 Tyrosine recombinase XerD compare
PP_5346 -0.9 -5.8 pyruvate carboxylase subunit B compare
PP_0214 -0.9 -3.8 4-aminobutyrate aminotransferase compare
PP_1654 -0.9 -3.1 cysteine synthase B compare
PP_1055 -0.9 -1.2 Type II secretion pathway protein GspN compare
PP_4799 -0.9 -0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1824 -0.9 -1.8 Smr domain protein compare
PP_3312 -0.9 -2.4 putative Heat shock protein compare
PP_4943 -0.9 -1.8 putative Glycosyl transferase compare
PP_4126 -0.9 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_1022 -0.9 -3.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4499 -0.8 -2.9 putative maturation enzyme compare
PP_5347 -0.8 -5.7 pyruvate carboxylase subunit A compare
PP_4695 -0.8 -5.9 Sensory box histidine kinase compare
PP_0948 -0.8 -2.3 Phosphocarrier protein HPr compare
PP_5182 -0.8 -4.8 polyamine:pyruvate transaminase compare
PP_3376 -0.8 -3.9 putative phosphonate dehydrogenase compare
PP_1217 -0.8 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1734 -0.8 -1.6 Probable septum site-determining protein MinC compare
PP_1224 -0.8 -3.7 periplasmic subunit of the TolQRA transport system compare
PP_5348 -0.8 -4.6 Transcriptional regulator, LysR family compare
PP_1878 -0.7 -5.0 conserved protein of unknown function compare
PP_2378 -0.7 -1.5 Fe/S biogenesis protein NfuA compare
PP_3098 -0.7 -1.3 conserved protein of unknown function compare
PP_0834 -0.7 -1.6 Sec translocation complex subunit YajC compare
PP_5058 -0.7 -2.7 Carboxy-terminal-processing protease compare
PP_4897 -0.7 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PP_5202 -0.7 -2.2 putative cell division protein compare
PP_0164 -0.7 -3.2 conserved protein of unknown function compare
PP_4804 -0.7 -1.3 RlpA-like lipoprotein compare
PP_3377 -0.7 -5.6 2-ketogluconate transporter, putative compare
PP_3726 -0.7 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_0377 -0.7 -1.6 coenzyme PQQ synthesis protein D compare
PP_4722 -0.7 -2.8 Transcription elongation factor GreA compare
PP_t49 -0.7 -2.9 tRNA-Met compare
PP_5717 -0.7 -1.8 conserved protein of unknown function compare
PP_4832 -0.7 -2.7 Precorrin-6x reductase compare
PP_3378 -0.7 -1.3 putative 2-ketogluconokinase compare
PP_4340 -0.7 -2.6 response regulator for chemotactic signal transduction compare
PP_1293 -0.7 -1.5 molybdopterin synthase small subunit compare
PP_5350 -0.7 -2.6 Transcriptional regulator, RpiR family compare
PP_4762 -0.7 -3.6 Acyl-CoA thioesterase II compare
PP_1038 -0.7 -2.2 conserved protein of unknown function compare
PP_4785 -0.7 -2.6 conserved exported protein of unknown function compare
PP_1917 -0.7 -4.4 4-amino-4-deoxychorismate lyase compare
PP_4880 -0.7 -1.9 exoribonuclease R compare
PP_4910 -0.7 -1.4 conserved protein of unknown function compare
PP_3833 -0.7 -2.5 Response regulator compare
PP_1020 -0.6 -2.1 putative glucose-6-phosphate 1-epimerase compare
PP_1871 -0.6 -2.8 Protease HtpX compare
PP_4940 -0.6 -3.4 Putative glycosyltransferase compare
PP_0435 -0.6 -4.8 Peptidase, M23/M37 family compare
PP_4122 -0.6 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0291 -0.6 -1.5 conserved protein of unknown function compare
PP_5094 -0.6 -3.1 putative enzyme with PLP binding domain compare
PP_3052 -0.6 -1.0 conserved protein of unknown function compare
PP_4984 -0.6 -4.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5262 -0.6 -4.9 Probable multidrug resistance protein NorM compare
PP_4332 -0.6 -2.9 Chemotaxis protein CheW compare
PP_3505 -0.6 -1.6 conserved protein of unknown function compare
PP_3760 -0.6 -2.7 putative methyltransferase compare
PP_0362 -0.6 -4.9 Biotin synthase compare
PP_5008 -0.6 -1.6 Poly granule-associated protein compare
PP_1860 -0.6 -3.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_4814 -0.6 -1.8 ATP-dependent protease La domain protein compare
PP_3105 -0.6 -1.7 conserved membrane protein of unknown function compare
PP_5491 -0.6 -1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_5453 -0.6 -1.0 conserved protein of unknown function compare
PP_5270 -0.6 -3.0 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0879 -0.6 -3.3 dipeptide ABC transporter - putative ATP binding subunit compare
PP_5707 -0.6 -2.0 conserved protein of unknown function compare
PP_5456 -0.6 -1.1 conserved protein of unknown function compare
PP_3892 -0.6 -1.4 conserved protein of unknown function compare
PP_1683 -0.6 -0.9 Transcriptional regulator, MarR family compare
PP_3971 -0.6 -1.6 conserved protein of unknown function compare
PP_4701 -0.5 -0.8 glucose-6-phosphate isomerase compare
PP_3662 -0.5 -3.6 conserved protein of unknown function compare
PP_3453 -0.5 -3.8 putative Sensor protein RstB compare
PP_2932 -0.5 -3.5 Amidase family protein compare
PP_4131 -0.5 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_5143 -0.5 -1.1 conserved membrane protein of unknown function compare
PP_5146 -0.5 -3.1 RNA pyrophosphohydrolase compare
PP_5183 -0.5 -2.7 glutamylpolyamine synthetase compare
PP_1142 -0.5 -1.0 conserved protein of unknown function compare
PP_5315 -0.5 -1.9 Rubredoxin-1 compare
PP_3924 -0.5 -2.3 conserved protein of unknown function compare
PP_0247 -0.5 -3.4 Osmolarity sensor protein EnvZ compare
PP_0833 -0.5 -1.1 queuine tRNA-ribosyltransferase compare
PP_0640 -0.5 -1.9 conserved protein of unknown function compare
PP_0673 -0.5 -1.2 conserved protein of unknown function compare
PP_1387 -0.5 -1.8 Probable HTH-type transcriptional regulator TtgR compare
PP_1233 -0.5 -1.9 sulfurtransferase compare
PP_1679 -0.5 -1.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3241 -0.5 -0.9 conserved exported protein of unknown function compare
PP_0536 -0.5 -1.7 conserved protein of unknown function compare
PP_5007 -0.5 -0.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5216 -0.5 -1.0 exopolyphosphatase compare
PP_1804 -0.5 -3.3 Glycosyl transferase WbpL compare
PP_1430 -0.5 -3.2 putative periplasmic serine endoprotease DegP-like compare
PP_2307 -0.5 -1.7 conserved protein of unknown function compare
PP_5528 -0.5 -1.5 conserved protein of unknown function compare
PP_1677 -0.5 -2.4 Adenosyl-cobyric acid synthase compare
PP_4874 -0.5 -0.6 50S ribosomal protein L9 compare
PP_4271 -0.5 -0.7 conserved protein of unknown function compare
PP_2750 -0.5 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source Caprolactam in Pseudomonas putida KT2440

For nitrogen source Caprolactam across organisms