Experiment set27IT019 for Pseudomonas putida KT2440

Compare to:

5-Aminovaleric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -6.7 -6.5 Carbamoyl-phosphate synthase small chain compare
PP_1986 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0082 -6.6 -4.6 tryptophan synthase alpha chain compare
PP_4678 -6.6 -17.7 Ketol-acid reductoisomerase compare
PP_1985 -6.6 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_0083 -6.2 -6.0 tryptophan synthase beta chain compare
PP_1988 -6.0 -12.1 3-isopropylmalate dehydrogenase compare
PP_0292 -5.9 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4723 -5.8 -16.0 Carbamoyl-phosphate synthase large chain compare
PP_1995 -5.8 -12.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5014 -5.7 -5.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0420 -5.6 -16.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -5.5 -9.1 Indole-3-glycerol phosphate synthase compare
PP_1079 -5.4 -9.8 Ornithine carbamoyltransferase compare
PP_0290 -5.4 -11.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5289 -5.4 -6.4 Acetylglutamate kinase compare
PP_1088 -5.4 -14.7 Argininosuccinate synthase compare
PP_0417 -5.4 -22.3 Anthranilate synthase component 1 compare
PP_4680 -5.3 -19.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -5.3 -18.9 homoserine O-acetyltransferase compare
PP_0966 -5.3 -16.2 Histidinol dehydrogenase compare
PP_5048 -5.2 -8.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5185 -5.2 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0787 -5.1 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0967 -5.1 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4909 -5.1 -11.8 phosphoserine phosphatase compare
PP_3511 -5.1 -12.0 Branched-chain-amino-acid aminotransferase compare
PP_5098 -5.0 -11.4 methionine biosynthesis protein MetW compare
PP_4364 -4.9 -7.5 putative Anti-sigma F factor antagonist compare
PP_5015 -4.9 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0421 -4.8 -9.0 Anthranilate phosphoribosyltransferase compare
PP_4890 -4.8 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -4.8 -8.3 Dihydroxy-acid dehydratase compare
PP_4679 -4.7 -9.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3999 -4.6 -7.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0289 -4.5 -9.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -4.5 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0184 -4.5 -9.5 Argininosuccinate lyase compare
PP_0691 -4.4 -5.2 Glutamate 5-kinase compare
PP_2371 -4.4 -9.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0214 -4.2 -10.1 4-aminobutyrate aminotransferase compare
PP_1912 -4.2 -9.2 Phosphate acyltransferase compare
PP_2001 -4.2 -11.8 O-succinylhomoserine sulfhydrylase compare
PP_1231 -4.0 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0293 -4.0 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5047 -3.9 -9.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1025 -3.7 -12.4 2-isopropylmalate synthase compare
PP_3484 -3.6 -9.6 Response regulator receiver protein compare
PP_5155 -3.6 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_4700 -3.5 -4.1 pantothenate synthetase compare
PP_2327 -3.5 -11.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0127 -3.2 -7.7 Thiol:disulfide interchange protein compare
PP_1589 -3.2 -12.1 uridylyltransferase compare
PP_2328 -3.2 -9.3 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -2.9 -3.2 conserved protein of unknown function compare
PP_2168 -2.8 -12.4 Transaldolase compare
PP_0164 -2.8 -8.8 conserved protein of unknown function compare
PP_0809 -2.6 -14.0 disulfide bond formation protein B compare
PP_1217 -2.5 -6.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4964 -2.3 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2910 -2.2 -11.4 L-2-hydroxyglutarate oxidase compare
PP_2088 -2.2 -4.8 RNA polymerase sigma factor SigX compare
PP_0001 -2.2 -2.3 probable chromosome-partitioning protein compare
PP_3790 -2.1 -12.1 diaminopimelate epimerase compare
PP_4696 -2.0 -6.4 Nitrogen regulation protein NR(I) compare
PP_5303 -2.0 -7.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0213 -1.9 -4.1 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_0339 -1.9 -5.3 Pyruvate dehydrogenase E1 component compare
PP_4004 -1.8 -3.9 DNA translocase FtsK compare
PP_0291 -1.8 -2.6 conserved protein of unknown function compare
PP_1664 -1.8 -5.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_5350 -1.7 -5.2 Transcriptional regulator, RpiR family compare
PP_4693 -1.7 -5.4 RNA polymerase-binding transcription factor DksA compare
PP_1468 -1.7 -4.4 Tyrosine recombinase XerD compare
PP_5347 -1.7 -11.3 pyruvate carboxylase subunit A compare
PP_5114 -1.6 -2.1 putative adenine methyltransferase compare
PP_5095 -1.6 -1.6 pyrroline-5-carboxylate reductase compare
PP_5346 -1.5 -8.3 pyruvate carboxylase subunit B compare
PP_2388 -1.4 -6.1 Transporter, LysE family compare
PP_5338 -1.4 -2.4 aspartate ammonia-lyase compare
PP_1215 -1.3 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_2909 -1.3 -7.0 glutarate hydroxylase (from data) compare
PP_2390 -1.2 -7.4 Transcriptional regulator, LysR family compare
PP_2543 -1.2 -7.8 gamma-aminobutyrate permease compare
PP_5104 -1.2 -6.7 thiazole synthase compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5348 -1.1 -6.3 Transcriptional regulator, LysR family compare
PP_1426 -1.1 -8.9 L-aspartate oxidase compare
PP_4829 -1.1 -2.9 putative precorrin-3B synthase compare
PP_4379 -1.1 -5.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1097 -1.0 -1.6 Methionine--tRNA ligase compare
PP_1022 -1.0 -3.2 glucose 6-phosphate-1-dehydrogenase compare
PP_2414 -1.0 -2.4 conserved exported protein of unknown function compare
PP_1110 -1.0 -3.8 serine acetyltransferase compare
PP_4480 -1.0 -7.0 arginine N-succinyltransferase, subunit alpha compare
PP_5227 -1.0 -5.7 diaminopimelate decarboxylase compare
PP_5230 -1.0 -3.5 Tyrosine recombinase XerC compare
PP_1994 -1.0 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_2542 -1.0 -5.9 Transcriptional regulator, GntR family compare
PP_0261 -1.0 -5.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0735 -1.0 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_3924 -0.9 -4.3 conserved protein of unknown function compare
PP_3506 -0.9 -3.1 Magnesium chelatase, subunit ChII compare
PP_1493 -0.9 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3508 -0.9 -2.8 Protein CobW compare
PP_4358 -0.9 -5.1 flagellar synthesis, switching and energizing component compare
PP_4782 -0.9 -4.6 Phosphomethylpyrimidine kinase compare
PP_1672 -0.9 -3.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1233 -0.8 -3.8 sulfurtransferase compare
PP_4684 -0.8 -5.2 conserved protein of unknown function with kinase-like domain compare
PP_4891 -0.8 -4.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0393 -0.8 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0593 -0.8 -1.3 putative ribosome-binding factor compare
PP_3409 -0.8 -2.2 putative Cobalamin biosynthesis protein cobE compare
PP_1216 -0.8 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3821 -0.8 -5.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2794 -0.8 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0833 -0.8 -1.6 queuine tRNA-ribosyltransferase compare
PP_4832 -0.8 -3.7 Precorrin-6x reductase compare
PP_t29 -0.8 -1.8 tRNA-Ala compare
PP_1128 -0.8 -1.6 OmpA family protein compare
PP_0914 -0.8 -6.0 GGDEF domain protein compare
PP_3248 -0.8 -1.3 Dyp-type peroxidase family protein compare
PP_1362 -0.8 -2.8 pyruvate kinase II compare
PP_1111 -0.8 -4.8 putative Synthetase compare
PP_0435 -0.7 -6.2 Peptidase, M23/M37 family compare
PP_1770 -0.7 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4792 -0.7 -2.0 conserved exported protein of unknown function compare
PP_2911 -0.7 -5.5 gamma-aminobutyrate permease compare
PP_3789 -0.7 -3.5 putative Efflux transporter compare
PP_4268 -0.7 -1.3 nucleoid-associated broad specificity regulator compare
PP_4922 -0.7 -5.5 Phosphomethylpyrimidine synthase compare
PP_4828 -0.7 -1.1 Precorrin-8X methylmutase compare
PP_4701 -0.7 -1.1 glucose-6-phosphate isomerase compare
PP_5216 -0.7 -1.8 exopolyphosphatase compare
PP_5546 -0.7 -1.6 conserved protein of unknown function compare
PP_5203 -0.7 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_1048 -0.7 -1.7 putative protein secretion protein for export compare
PP_1654 -0.7 -2.0 cysteine synthase B compare
PP_1681 -0.7 -5.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2375 -0.7 -5.6 cobalamin-dependent methionine synthase compare
PP_4122 -0.7 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3105 -0.7 -2.0 conserved membrane protein of unknown function compare
PP_2929 -0.7 -4.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5217 -0.7 -6.1 Polyphosphate kinase compare
PP_4143 -0.7 -2.5 conserved protein of unknown function compare
PP_0673 -0.7 -1.1 conserved protein of unknown function compare
PP_4695 -0.7 -5.3 Sensory box histidine kinase compare
PP_4699 -0.7 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0345 -0.7 -1.7 putative Heptose kinase WapP compare
PP_4830 -0.7 -3.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_3507 -0.6 -5.2 Aerobic cobaltochelatase subunit CobN compare
PP_1764 -0.6 -3.6 Phosphoglycolate phosphatase 2 compare
PP_0834 -0.6 -1.8 Sec translocation complex subunit YajC compare
PP_1142 -0.6 -1.2 conserved protein of unknown function compare
PP_5528 -0.6 -2.0 conserved protein of unknown function compare
PP_4199 -0.6 -1.0 putative Lipoprotein compare
PP_3102 -0.6 -2.9 conserved protein of unknown function compare
PP_1675 -0.6 -3.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5075 -0.6 -4.8 glutamate synthase (NADPH) beta subunit compare
PP_1673 -0.6 -3.6 cobyrinate a,c-diamide synthase compare
PP_3151 -0.6 -4.7 NAD+-dependent succinate semialdehyde dehydrogenase compare
PP_1346 -0.6 -3.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1676 -0.6 -3.3 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4977 -0.6 -4.5 5,10-methylenetetrahydrofolate reductase compare
PP_4892 -0.6 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4058 -0.6 -4.6 1,4-alpha-glucan branching enzyme compare
PP_5028 -0.6 -1.7 proline iminopeptidase compare
PP_4826 -0.6 -3.5 Precorrin-3B C17-methyltransferase compare
PP_4875 -0.6 -3.0 conserved membrane protein of unknown function compare
PP_5628 -0.6 -1.0 conserved protein of unknown function compare
PP_1678 -0.6 -2.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2031 -0.6 -1.6 conserved protein of unknown function compare
PP_1826 -0.6 -2.2 Hydrolase, isochorismatase family compare
PP_2217 -0.6 -2.3 enoyl-CoA hydratase compare
PP_1733 -0.6 -1.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_4879 -0.6 -2.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2029 -0.6 -1.9 von Willebrand factor type A domain protein compare
PP_4273 -0.5 -1.1 Transcriptional regulator, MerR family compare
PP_1096 -0.5 -2.2 putative electron transport complex protein compare
PP_1304 -0.5 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0888 -0.5 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_5076 -0.5 -4.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_3201 -0.5 -2.3 BNR domain protein compare
PP_4162 -0.5 -2.0 conserved membrane protein of unknown function compare
PP_1109 -0.5 -4.3 Transcriptional regulator, GntR family compare
PP_0058 -0.5 -4.2 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_3365 -0.5 -1.2 Acetolactate synthase compare
PP_4943 -0.5 -1.3 putative Glycosyl transferase compare
PP_5575 -0.5 -1.7 conserved protein of unknown function compare
PP_5090 -0.5 -1.0 putative cell division protein compare
PP_2203 -0.5 -1.4 conserved protein of unknown function compare
PP_1690 -0.5 -2.4 conserved protein of unknown function compare
PP_3840 -0.5 -1.3 conserved protein of unknown function compare
PP_4944 -0.5 -1.8 Carbamoyltransferase compare
PP_3892 -0.5 -1.3 conserved protein of unknown function compare
PP_4824 -0.5 -2.7 Sensor histidine kinase/response regulator compare
PP_3516 -0.5 -3.2 Transcriptional regulator, AraC family compare
PP_2345 -0.5 -1.6 conserved exported protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source 5-Aminovaleric acid in Pseudomonas putida KT2440

For nitrogen source 5-Aminovaleric acid across organisms