Experiment set27IT018 for Pseudomonas putida KT2440

Compare to:

5-Aminovaleric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4364 -8.5 -5.9 putative Anti-sigma F factor antagonist compare
PP_1079 -7.5 -7.3 Ornithine carbamoyltransferase compare
PP_1985 -7.2 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.8 -10.3 3-isopropylmalate dehydrogenase compare
PP_0292 -6.5 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0422 -6.4 -8.8 Indole-3-glycerol phosphate synthase compare
PP_4909 -6.4 -8.7 phosphoserine phosphatase compare
PP_0290 -6.3 -10.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -6.2 -18.3 Ketol-acid reductoisomerase compare
PP_1995 -6.0 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -5.8 -8.0 tryptophan synthase alpha chain compare
PP_4679 -5.8 -9.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -5.7 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -5.7 -5.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -5.7 -16.0 Histidinol dehydrogenase compare
PP_5048 -5.7 -9.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4724 -5.5 -9.2 Carbamoyl-phosphate synthase small chain compare
PP_0420 -5.5 -15.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0293 -5.5 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0184 -5.5 -7.5 Argininosuccinate lyase compare
PP_0083 -5.3 -8.9 tryptophan synthase beta chain compare
PP_4680 -5.3 -20.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -5.2 -11.4 Branched-chain-amino-acid aminotransferase compare
PP_4723 -5.2 -18.0 Carbamoyl-phosphate synthase large chain compare
PP_1088 -5.1 -15.7 Argininosuccinate synthase compare
PP_0417 -5.1 -20.3 Anthranilate synthase component 1 compare
PP_5098 -5.1 -12.6 methionine biosynthesis protein MetW compare
PP_5185 -5.0 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -5.0 -8.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -5.0 -14.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -5.0 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -4.8 -10.5 Dihydroxy-acid dehydratase compare
PP_0421 -4.8 -8.3 Anthranilate phosphoribosyltransferase compare
PP_2371 -4.8 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5097 -4.7 -15.0 homoserine O-acetyltransferase compare
PP_5289 -4.7 -7.8 Acetylglutamate kinase compare
PP_1986 -4.5 -6.1 3-isopropylmalate dehydratase small subunit compare
PP_2001 -4.5 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_3999 -4.5 -9.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -4.3 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3484 -4.2 -9.5 Response regulator receiver protein compare
PP_0965 -4.2 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1912 -4.1 -9.0 Phosphate acyltransferase compare
PP_1025 -4.1 -13.2 2-isopropylmalate synthase compare
PP_2328 -4.1 -9.8 Phosphoadenosine phosphosulfate reductase compare
PP_0214 -4.0 -10.3 4-aminobutyrate aminotransferase compare
PP_0127 -4.0 -7.9 Thiol:disulfide interchange protein compare
PP_2327 -3.9 -11.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1231 -3.9 -9.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -3.8 -3.7 pantothenate synthetase compare
PP_0787 -3.7 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5047 -3.7 -8.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_0691 -3.4 -3.7 Glutamate 5-kinase compare
PP_1589 -3.4 -12.9 uridylyltransferase compare
PP_2168 -3.0 -12.7 Transaldolase compare
PP_2370 -2.9 -3.2 conserved protein of unknown function compare
PP_0164 -2.8 -9.3 conserved protein of unknown function compare
PP_0809 -2.5 -12.1 disulfide bond formation protein B compare
PP_2088 -2.4 -6.1 RNA polymerase sigma factor SigX compare
PP_5303 -2.2 -7.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5095 -2.2 -2.1 pyrroline-5-carboxylate reductase compare
PP_0213 -2.2 -4.7 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_2910 -2.2 -11.8 L-2-hydroxyglutarate oxidase compare
PP_0339 -2.2 -5.9 Pyruvate dehydrogenase E1 component compare
PP_3790 -2.0 -11.6 diaminopimelate epimerase compare
PP_1215 -1.9 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_4964 -1.8 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_0291 -1.8 -1.8 conserved protein of unknown function compare
PP_5347 -1.7 -11.0 pyruvate carboxylase subunit A compare
PP_1664 -1.7 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4696 -1.6 -5.3 Nitrogen regulation protein NR(I) compare
PP_4693 -1.5 -3.6 RNA polymerase-binding transcription factor DksA compare
PP_2909 -1.4 -8.4 glutarate hydroxylase (from data) compare
PP_5346 -1.3 -8.3 pyruvate carboxylase subunit B compare
PP_5227 -1.3 -5.9 diaminopimelate decarboxylase compare
PP_2388 -1.3 -3.8 Transporter, LysE family compare
PP_4480 -1.3 -8.1 arginine N-succinyltransferase, subunit alpha compare
PP_2543 -1.2 -8.7 gamma-aminobutyrate permease compare
PP_5338 -1.2 -2.1 aspartate ammonia-lyase compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0393 -1.1 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5348 -1.1 -7.4 Transcriptional regulator, LysR family compare
PP_1233 -1.1 -5.0 sulfurtransferase compare
PP_4004 -1.1 -3.5 DNA translocase FtsK compare
PP_5350 -1.1 -3.1 Transcriptional regulator, RpiR family compare
PP_1362 -1.1 -3.5 pyruvate kinase II compare
PP_1426 -1.1 -8.9 L-aspartate oxidase compare
PP_4379 -1.1 -5.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4828 -1.1 -1.8 Precorrin-8X methylmutase compare
PP_4782 -1.0 -5.2 Phosphomethylpyrimidine kinase compare
PP_2390 -1.0 -7.3 Transcriptional regulator, LysR family compare
PP_4699 -1.0 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4358 -1.0 -6.3 flagellar synthesis, switching and energizing component compare
PP_1217 -1.0 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2542 -1.0 -6.3 Transcriptional regulator, GntR family compare
PP_4098 -1.0 -1.5 UvrABC system protein C compare
PP_0261 -1.0 -6.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5104 -1.0 -6.0 thiazole synthase compare
PP_4247 -1.0 -2.0 Exonuclease compare
PP_1022 -1.0 -3.8 glucose 6-phosphate-1-dehydrogenase compare
PP_2414 -0.9 -2.9 conserved exported protein of unknown function compare
PP_5331 -0.9 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_0888 -0.9 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_0735 -0.9 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_1994 -0.9 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_5253 -0.9 -2.9 Arylesterase compare
PP_1216 -0.9 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4829 -0.9 -3.0 putative precorrin-3B synthase compare
PP_1734 -0.9 -2.0 Probable septum site-determining protein MinC compare
PP_3241 -0.9 -1.6 conserved exported protein of unknown function compare
PP_3924 -0.9 -4.0 conserved protein of unknown function compare
PP_4910 -0.9 -1.4 conserved protein of unknown function compare
PP_1770 -0.8 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5230 -0.8 -3.1 Tyrosine recombinase XerC compare
PP_1493 -0.8 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5528 -0.8 -2.7 conserved protein of unknown function compare
PP_0957 -0.8 -2.0 D-arabinose 5-phosphate isomerase compare
PP_2911 -0.8 -5.2 gamma-aminobutyrate permease compare
PP_0914 -0.8 -6.0 GGDEF domain protein compare
PP_1128 -0.8 -1.8 OmpA family protein compare
PP_4922 -0.8 -6.0 Phosphomethylpyrimidine synthase compare
PP_0833 -0.8 -1.4 queuine tRNA-ribosyltransferase compare
PP_4726 -0.7 -1.9 Chaperone protein DnaJ compare
PP_1679 -0.7 -2.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1110 -0.7 -2.6 serine acetyltransferase compare
PP_2847 -0.7 -1.2 Urease accessory protein UreJ compare
PP_3507 -0.7 -5.8 Aerobic cobaltochelatase subunit CobN compare
PP_4058 -0.7 -5.3 1,4-alpha-glucan branching enzyme compare
PP_4532 -0.7 -1.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3789 -0.7 -3.3 putative Efflux transporter compare
PP_3508 -0.7 -2.0 Protein CobW compare
PP_1681 -0.7 -5.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4832 -0.7 -3.2 Precorrin-6x reductase compare
PP_0435 -0.7 -5.4 Peptidase, M23/M37 family compare
PP_4045 -0.7 -1.1 conserved protein of unknown function compare
PP_1328 -0.7 -1.9 Protein MraZ compare
PP_4977 -0.6 -5.0 5,10-methylenetetrahydrofolate reductase compare
PP_1468 -0.6 -1.2 Tyrosine recombinase XerD compare
PP_2378 -0.6 -1.4 Fe/S biogenesis protein NfuA compare
PP_3151 -0.6 -4.2 NAD+-dependent succinate semialdehyde dehydrogenase compare
PP_1676 -0.6 -3.5 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3505 -0.6 -2.0 conserved protein of unknown function compare
PP_4368 -0.6 -4.0 flagellar motor switch protein compare
PP_1677 -0.6 -3.3 Adenosyl-cobyric acid synthase compare
PP_1672 -0.6 -3.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1048 -0.6 -2.0 putative protein secretion protein for export compare
PP_4695 -0.6 -4.7 Sensory box histidine kinase compare
PP_2031 -0.6 -1.9 conserved protein of unknown function compare
PP_4369 -0.6 -4.2 Flagellar M-ring protein compare
PP_5203 -0.6 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_2737 -0.6 -1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5217 -0.6 -5.1 Polyphosphate kinase compare
PP_2581 -0.6 -1.7 conserved protein of unknown function compare
PP_5469 -0.6 -2.7 putative SAM-dependent methyltransferase compare
PP_3506 -0.6 -2.8 Magnesium chelatase, subunit ChII compare
PP_4684 -0.6 -3.9 conserved protein of unknown function with kinase-like domain compare
PP_3892 -0.6 -1.4 conserved protein of unknown function compare
PP_2681 -0.5 -1.7 coenzyme PQQ synthesis protein D compare
PP_1124 -0.5 -2.5 conserved membrane protein of unknown function compare
PP_4892 -0.5 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3762 -0.5 -1.4 Response regulator compare
PP_1109 -0.5 -4.3 Transcriptional regulator, GntR family compare
PP_1326 -0.5 -1.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4054 -0.5 -1.1 conserved protein of unknown function compare
PP_4804 -0.5 -1.4 RlpA-like lipoprotein compare
PP_2929 -0.5 -3.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2826 -0.5 -1.9 Transcriptional regulator MexT compare
PP_2375 -0.5 -4.3 cobalamin-dependent methionine synthase compare
PP_4551 -0.5 -3.0 Hydrolase, alpha/beta fold family compare
PP_0345 -0.5 -1.6 putative Heptose kinase WapP compare
PP_1303 -0.5 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_t57 -0.5 -2.6 tRNA-Arg compare
PP_5028 -0.5 -1.8 proline iminopeptidase compare
PP_0881 -0.5 -3.2 dipeptide ABC transporter - putative membrane subunit compare
PP_3105 -0.5 -1.9 conserved membrane protein of unknown function compare
PP_4831 -0.5 -2.3 putative cobalt-precorrin-6A synthase compare
PP_5255 -0.5 -2.6 putative hydrolase compare
PP_5035 -0.5 -3.5 Histidine utilization repressor compare
PP_1224 -0.5 -2.8 periplasmic subunit of the TolQRA transport system compare
PP_4359 -0.5 -3.2 Flagellar protein FliL compare
PP_4826 -0.5 -2.9 Precorrin-3B C17-methyltransferase compare
PP_0834 -0.5 -1.4 Sec translocation complex subunit YajC compare
PP_1675 -0.5 -2.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2090 -0.5 -2.5 Uroporphyrinogen-III C-methyltransferase compare
PP_4792 -0.5 -2.0 conserved exported protein of unknown function compare
PP_1445 -0.5 -4.2 carbohydrate-selective porin compare
PP_1673 -0.5 -2.6 cobyrinate a,c-diamide synthase compare
PP_0260 -0.5 -2.6 ADP-sugar pyrophosphorylase compare
PP_2322 -0.5 -2.0 Major outer membrane lipoprotein compare
PP_4937 -0.5 -1.3 toluene tolerance protein compare
PP_5075 -0.5 -3.8 glutamate synthase (NADPH) beta subunit compare
PP_3411 -0.5 -0.7 conserved protein of unknown function compare
PP_2748 -0.5 -1.3 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5328 -0.5 -1.3 putative phosphate transport system permease protein compare
PP_1674 -0.5 -1.7 5,6-dimethylbenzimidazole synthase compare
PP_1733 -0.5 -1.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_3821 -0.5 -3.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1871 -0.5 -2.7 Protease HtpX compare
PP_0775 -0.5 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source 5-Aminovaleric acid in Pseudomonas putida KT2440

For nitrogen source 5-Aminovaleric acid across organisms