Experiment set27IT017 for Pseudomonas putida KT2440

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_5048 -7.9 -5.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0293 -7.2 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -7.2 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_5047 -6.7 -9.3 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0082 -6.3 -6.1 tryptophan synthase alpha chain compare
PP_1995 -6.3 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -6.2 -18.3 Ketol-acid reductoisomerase compare
PP_0967 -6.2 -13.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -6.2 -17.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -6.1 -6.0 tryptophan synthase beta chain compare
PP_0966 -6.1 -15.3 Histidinol dehydrogenase compare
PP_1988 -6.1 -11.6 3-isopropylmalate dehydrogenase compare
PP_5289 -6.1 -5.9 Acetylglutamate kinase compare
PP_5076 -6.0 -25.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_0292 -5.9 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5075 -5.9 -17.4 glutamate synthase (NADPH) beta subunit compare
PP_2168 -5.8 -16.0 Transaldolase compare
PP_1986 -5.8 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_4724 -5.8 -8.9 Carbamoyl-phosphate synthase small chain compare
PP_0290 -5.7 -9.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -5.4 -14.4 Argininosuccinate synthase compare
PP_0422 -5.4 -8.8 Indole-3-glycerol phosphate synthase compare
PP_0420 -5.4 -15.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -5.2 -7.9 Anthranilate phosphoribosyltransferase compare
PP_0184 -5.1 -8.6 Argininosuccinate lyase compare
PP_0417 -5.1 -21.7 Anthranilate synthase component 1 compare
PP_0787 -5.1 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1079 -5.1 -9.0 Ornithine carbamoyltransferase compare
PP_4909 -4.9 -12.3 phosphoserine phosphatase compare
PP_4723 -4.9 -17.4 Carbamoyl-phosphate synthase large chain compare
PP_3511 -4.8 -12.5 Branched-chain-amino-acid aminotransferase compare
PP_5014 -4.8 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5185 -4.6 -9.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1589 -4.6 -12.4 uridylyltransferase compare
PP_4696 -4.4 -8.0 Nitrogen regulation protein NR(I) compare
PP_4679 -4.4 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -4.4 -8.1 Dihydroxy-acid dehydratase compare
PP_4890 -4.4 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0289 -4.3 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4364 -3.9 -5.4 putative Anti-sigma F factor antagonist compare
PP_0735 -3.9 -3.3 molybdopterin-synthase adenylyltransferase compare
PP_5347 -3.9 -15.4 pyruvate carboxylase subunit A compare
PP_0691 -3.9 -5.9 Glutamate 5-kinase compare
PP_5098 -3.9 -10.6 methionine biosynthesis protein MetW compare
PP_0339 -3.8 -2.6 Pyruvate dehydrogenase E1 component compare
PP_1294 -3.8 -7.3 molybdopterin synthase large subunit conserved
PP_1231 -3.8 -8.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1233 -3.8 -7.5 sulfurtransferase compare
PP_0965 -3.7 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1706 -3.7 -7.0 Nitrite reductase conserved
PP_3999 -3.6 -9.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2328 -3.6 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_1292 -3.6 -8.9 Cyclic pyranopterin monophosphate synthase accessory protein conserved
PP_5097 -3.6 -16.1 homoserine O-acetyltransferase compare
PP_2001 -3.6 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_1293 -3.5 -2.7 molybdopterin synthase small subunit compare
PP_5095 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
PP_5015 -3.5 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5346 -3.5 -10.9 pyruvate carboxylase subunit B compare
PP_2371 -3.3 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5348 -3.3 -12.1 Transcriptional regulator, LysR family compare
PP_2093 -3.2 -14.3 NasT conserved
PP_2123 -3.0 -12.3 molybdenum::molybdopterin ligase conserved
PP_3828 -3.0 -12.0 Molybdate-binding periplasmic protein conserved
PP_1703 -3.0 -17.5 assimilatory nitrate reductase/sulfite reductase conserved
PP_1025 -3.0 -10.2 2-isopropylmalate synthase compare
PP_1705 -2.9 -13.0 nitrite reductase [NAD(P)H] large subunit conserved
PP_1110 -2.8 -3.7 serine acetyltransferase compare
PP_2327 -2.8 -10.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1362 -2.8 -7.1 pyruvate kinase II compare
PP_4700 -2.8 -4.6 pantothenate synthetase compare
PP_5155 -2.8 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3829 -2.7 -6.8 Molybdenum transport system permease protein ModB conserved
PP_1022 -2.7 -7.5 glucose 6-phosphate-1-dehydrogenase compare
PP_0362 -2.5 -15.2 Biotin synthase compare
PP_5303 -2.5 -5.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1109 -2.4 -11.1 Transcriptional regulator, GntR family compare
PP_2092 -2.4 -11.9 Nitrate transporter conserved
PP_2122 -2.4 -4.6 molybdenum cofactor biosynthesis protein B compare
PP_1111 -2.2 -6.6 putative Synthetase compare
PP_4693 -2.2 -6.1 RNA polymerase-binding transcription factor DksA compare
PP_2370 -2.1 -3.8 conserved protein of unknown function compare
PP_3790 -2.1 -11.2 diaminopimelate epimerase compare
PP_2088 -2.0 -6.9 RNA polymerase sigma factor SigX compare
PP_5104 -2.0 -8.9 thiazole synthase compare
PP_1654 -2.0 -5.0 cysteine synthase B compare
PP_4597 -2.0 -6.8 Cyclic pyranopterin monophosphate synthase conserved
PP_4782 -1.8 -7.4 Phosphomethylpyrimidine kinase compare
PP_4480 -1.8 -10.4 arginine N-succinyltransferase, subunit alpha compare
PP_1664 -1.7 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4004 -1.6 -4.6 DNA translocase FtsK compare
PP_5227 -1.6 -7.3 diaminopimelate decarboxylase compare
PP_0846 -1.6 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_4984 -1.5 -11.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1216 -1.5 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4922 -1.5 -10.2 Phosphomethylpyrimidine synthase compare
PP_2388 -1.5 -5.4 Transporter, LysE family compare
PP_2414 -1.5 -1.3 conserved exported protein of unknown function compare
PP_0366 -1.4 -7.7 dethiobiotin synthetase compare
PP_1217 -1.4 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0363 -1.4 -9.2 8-amino-7-oxononanoate synthase compare
PP_5350 -1.4 -4.5 Transcriptional regulator, RpiR family compare
PP_3378 -1.4 -2.6 putative 2-ketogluconokinase compare
PP_0719 -1.4 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0291 -1.4 -1.6 conserved protein of unknown function compare
PP_1348 -1.3 -6.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3484 -1.3 -4.4 Response regulator receiver protein compare
PP_0833 -1.3 -2.4 queuine tRNA-ribosyltransferase compare
PP_2378 -1.3 -2.6 Fe/S biogenesis protein NfuA compare
PP_0365 -1.2 -7.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3376 -1.2 -6.3 putative phosphonate dehydrogenase compare
PP_4701 -1.2 -1.7 glucose-6-phosphate isomerase compare
PP_5216 -1.2 -2.8 exopolyphosphatase compare
PP_3649 -1.2 -3.4 Transcriptional regulator, GntR family compare
PP_0164 -1.2 -5.5 conserved protein of unknown function compare
PP_4964 -1.2 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0364 -1.2 -6.5 pimeloyl-[acp] methyl ester esterase compare
PP_2094 -1.2 -3.3 putative Nitrate-binding protein NasS compare
PP_2402 -1.2 -2.8 putative Sensor histidine kinase compare
PP_3830 -1.2 -8.0 Molybdenum import ATP-binding protein ModC compare
PP_4828 -1.2 -1.9 Precorrin-8X methylmutase compare
PP_5233 -1.2 -7.9 ammonium transporter AmtB compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0393 -1.2 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1912 -1.1 -5.9 Phosphate acyltransferase compare
PP_1426 -1.1 -9.4 L-aspartate oxidase compare
PP_3946 -1.1 -2.3 HTH-type transcriptional repressor NicR compare
PP_2433 -1.1 -1.1 conserved protein of unknown function compare
PP_3105 -1.1 -3.5 conserved membrane protein of unknown function compare
PP_1493 -1.1 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4695 -1.1 -6.6 Sensory box histidine kinase compare
PP_3417 -1.0 -4.1 D-gluconate transporter compare
PP_1826 -1.0 -2.8 Hydrolase, isochorismatase family compare
PP_1672 -1.0 -5.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5628 -1.0 -2.2 conserved protein of unknown function compare
PP_2345 -1.0 -2.8 conserved exported protein of unknown function compare
PP_1734 -1.0 -2.1 Probable septum site-determining protein MinC compare
PP_1994 -1.0 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_2390 -1.0 -5.9 Transcriptional regulator, LysR family compare
PP_2348 -1.0 -4.8 Sensor histidine kinase compare
PP_1783 -1.0 -1.6 dTDP-glucose pyrophosphorylase compare
PP_3506 -1.0 -3.2 Magnesium chelatase, subunit ChII compare
PP_1020 -0.9 -3.1 putative glucose-6-phosphate 1-epimerase compare
PP_0261 -0.9 -5.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4993 -0.9 -2.9 Glutathione synthetase compare
PP_0127 -0.9 -4.1 Thiol:disulfide interchange protein compare
PP_5331 -0.9 -3.0 Long-chain acyl-CoA thioester hydrolase compare
PP_1009 -0.9 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0435 -0.9 -7.1 Peptidase, M23/M37 family compare
PP_0377 -0.9 -1.9 coenzyme PQQ synthesis protein D compare
PP_0376 -0.9 -6.2 Coenzyme PQQ synthesis protein E compare
PP_1681 -0.9 -6.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1468 -0.9 -2.8 Tyrosine recombinase XerD compare
PP_3377 -0.9 -6.9 2-ketogluconate transporter, putative compare
PP_0378 -0.8 -5.4 Pyrroloquinoline-quinone synthase compare
PP_5508 -0.8 -1.5 conserved protein of unknown function compare
PP_1128 -0.8 -2.1 OmpA family protein compare
PP_3505 -0.8 -1.8 conserved protein of unknown function compare
PP_2375 -0.8 -6.5 cobalamin-dependent methionine synthase compare
PP_4829 -0.8 -2.5 putative precorrin-3B synthase compare
PP_4977 -0.8 -6.2 5,10-methylenetetrahydrofolate reductase compare
PP_4684 -0.8 -4.6 conserved protein of unknown function with kinase-like domain compare
PP_2302 -0.8 -3.8 DNA-binding, ATP-dependent protease compare
PP_4895 -0.8 -2.0 tRNA dimethylallyltransferase compare
PP_4699 -0.7 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5528 -0.7 -2.4 conserved protein of unknown function compare
PP_t29 -0.7 -1.7 tRNA-Ala compare
PP_1304 -0.7 -5.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4199 -0.7 -1.2 putative Lipoprotein compare
PP_1011 -0.7 -5.3 glucokinase compare
PP_3098 -0.7 -1.4 conserved protein of unknown function compare
PP_1679 -0.7 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2324 -0.7 -4.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0379 -0.7 -4.7 Coenzyme PQQ synthesis protein B compare
PP_1673 -0.7 -3.8 cobyrinate a,c-diamide synthase compare
PP_3789 -0.7 -3.5 putative Efflux transporter compare
PP_1678 -0.7 -2.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0001 -0.7 -0.7 probable chromosome-partitioning protein compare
PP_1575 -0.7 -1.2 conserved protein of unknown function compare
PP_1444 -0.7 -5.4 quinoprotein glucose dehydrogenase compare
PP_5324 -0.7 -1.4 Response regulator compare
PP_3507 -0.7 -5.1 Aerobic cobaltochelatase subunit CobN compare
PP_4058 -0.7 -5.3 1,4-alpha-glucan branching enzyme compare
PP_5717 -0.7 -2.2 conserved protein of unknown function compare
PP_0381 -0.7 -3.7 Coenzyme PQQ synthesis protein F compare
PP_3243 -0.7 -2.5 Acetyltransferase, GNAT family compare
PP_1675 -0.7 -4.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1038 -0.7 -2.1 conserved protein of unknown function compare
PP_3508 -0.6 -3.0 Protein CobW compare
PP_1097 -0.6 -1.5 Methionine--tRNA ligase compare
PP_1677 -0.6 -2.4 Adenosyl-cobyric acid synthase compare
PP_4098 -0.6 -0.9 UvrABC system protein C compare
PP_5028 -0.6 -2.0 proline iminopeptidase compare
PP_4073 -0.6 -2.2 conserved exported protein of unknown function compare
PP_4880 -0.6 -2.3 exoribonuclease R compare
PP_2681 -0.6 -1.0 coenzyme PQQ synthesis protein D compare
PP_1629 -0.6 -2.4 Protein RecA compare
PP_5338 -0.6 -1.3 aspartate ammonia-lyase compare
PP_5661 -0.6 -3.1 putative lipoprotein compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas putida KT2440

For nitrogen source Sodium nitrate across organisms