Experiment set27IT016 for Pseudomonas putida KT2440
Sodium nitrate nitrogen source
Group: nitrogen sourceMedia: MOPS minimal media_Glucose_noNitrogen + Sodium nitrate (10 mM)
Culturing: Putida_ML5_JBEI, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=200 rpm
By: Mitchell Thompson on 11/8/20
Media components: 10 mM D-Glucose, 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 10 genes in this experiment
For nitrogen source Sodium nitrate in Pseudomonas putida KT2440
For nitrogen source Sodium nitrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Molybdenum cofactor biosynthesis | 5 |
| Nitrate and nitrite ammonification | 5 |
| Transport of Molybdenum | 3 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| alkylnitronates degradation | 2 | 2 | 1 |
| nitrate reduction V (assimilatory) | 2 | 1 | 1 |
| molybdopterin biosynthesis | 6 | 4 | 1 |