Experiment set27IT015 for Pseudomonas putida KT2440

Compare to:

4-aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1995 -6.8 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1986 -6.7 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_0083 -6.2 -6.0 tryptophan synthase beta chain compare
PP_1231 -6.2 -9.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0082 -6.1 -7.3 tryptophan synthase alpha chain compare
PP_0420 -6.0 -16.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4724 -6.0 -8.2 Carbamoyl-phosphate synthase small chain compare
PP_4909 -5.8 -11.2 phosphoserine phosphatase compare
PP_1088 -5.8 -13.9 Argininosuccinate synthase compare
PP_1988 -5.7 -12.7 3-isopropylmalate dehydrogenase compare
PP_3511 -5.7 -12.6 Branched-chain-amino-acid aminotransferase compare
PP_4723 -5.6 -16.9 Carbamoyl-phosphate synthase large chain compare
PP_0127 -5.6 -8.5 Thiol:disulfide interchange protein compare
PP_0292 -5.5 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0422 -5.5 -9.8 Indole-3-glycerol phosphate synthase compare
PP_0290 -5.3 -11.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -5.3 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -5.3 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -5.3 -10.7 Ornithine carbamoyltransferase compare
PP_4678 -5.2 -19.8 Ketol-acid reductoisomerase compare
PP_4680 -5.2 -20.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -5.0 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -4.9 -8.9 Argininosuccinate lyase compare
PP_0417 -4.9 -22.2 Anthranilate synthase component 1 compare
PP_0421 -4.9 -8.7 Anthranilate phosphoribosyltransferase compare
PP_5289 -4.9 -7.4 Acetylglutamate kinase compare
PP_5185 -4.7 -9.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4364 -4.6 -6.5 putative Anti-sigma F factor antagonist compare
PP_1985 -4.6 -8.8 3-isopropylmalate dehydratase large subunit compare
PP_0966 -4.6 -12.3 Histidinol dehydrogenase compare
PP_0289 -4.6 -9.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -4.5 -13.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -4.4 -17.9 homoserine O-acetyltransferase compare
PP_4679 -4.3 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -4.1 -10.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0691 -4.0 -6.1 Glutamate 5-kinase compare
PP_5155 -4.0 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5015 -4.0 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5128 -4.0 -7.6 Dihydroxy-acid dehydratase compare
PP_5014 -3.9 -7.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0787 -3.9 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5098 -3.9 -12.7 methionine biosynthesis protein MetW compare
PP_4700 -3.9 -3.8 pantothenate synthetase compare
PP_3999 -3.8 -10.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1025 -3.8 -12.9 2-isopropylmalate synthase compare
PP_2371 -3.7 -10.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0809 -3.7 -16.9 disulfide bond formation protein B compare
PP_2001 -3.6 -11.5 O-succinylhomoserine sulfhydrylase compare
PP_0164 -3.3 -10.0 conserved protein of unknown function compare
PP_1215 -3.3 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_2390 -3.1 -12.7 Transcriptional regulator, LysR family compare
PP_0339 -3.0 -5.7 Pyruvate dehydrogenase E1 component compare
PP_4999 -2.8 -2.7 dihydroorotase-like protein compare
PP_2388 -2.8 -8.4 Transporter, LysE family compare
PP_0291 -2.7 -2.6 conserved protein of unknown function compare
PP_2328 -2.6 -9.1 Phosphoadenosine phosphosulfate reductase compare
PP_5303 -2.5 -7.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1022 -2.5 -7.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0214 -2.3 -8.1 4-aminobutyrate aminotransferase compare
PP_2370 -2.1 -2.1 conserved protein of unknown function compare
PP_1912 -2.0 -7.1 Phosphate acyltransferase compare
PP_1994 -1.9 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_4004 -1.8 -5.0 DNA translocase FtsK compare
PP_2414 -1.8 -2.0 conserved exported protein of unknown function compare
PP_1664 -1.8 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1468 -1.8 -4.3 Tyrosine recombinase XerD compare
PP_5095 -1.7 -2.0 pyrroline-5-carboxylate reductase compare
PP_1426 -1.6 -12.3 L-aspartate oxidase compare
PP_3484 -1.6 -4.6 Response regulator receiver protein compare
PP_4943 -1.5 -3.1 putative Glycosyl transferase compare
PP_4696 -1.5 -5.5 Nitrogen regulation protein NR(I) compare
PP_0393 -1.4 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4699 -1.4 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1770 -1.3 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0888 -1.3 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_5227 -1.3 -7.6 diaminopimelate decarboxylase compare
PP_0914 -1.3 -9.4 GGDEF domain protein compare
PP_4964 -1.3 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_5350 -1.2 -4.7 Transcriptional regulator, RpiR family compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3821 -1.2 -8.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4782 -1.1 -6.1 Phosphomethylpyrimidine kinase compare
PP_4693 -1.1 -4.5 RNA polymerase-binding transcription factor DksA compare
PP_5104 -1.1 -6.0 thiazole synthase compare
PP_1110 -1.1 -2.6 serine acetyltransferase compare
PP_1128 -1.1 -2.2 OmpA family protein compare
PP_4910 -1.0 -2.7 conserved protein of unknown function compare
PP_3790 -1.0 -6.6 diaminopimelate epimerase compare
PP_0846 -1.0 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_1216 -1.0 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5295 -1.0 -1.8 conserved protein of unknown function compare
PP_2168 -1.0 -7.0 Transaldolase compare
PP_1493 -1.0 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0735 -0.9 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_3508 -0.9 -3.7 Protein CobW compare
PP_5048 -0.9 -5.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5230 -0.9 -3.3 Tyrosine recombinase XerC compare
PP_5216 -0.9 -2.1 exopolyphosphatase compare
PP_1672 -0.9 -4.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1304 -0.9 -5.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4829 -0.8 -2.3 putative precorrin-3B synthase compare
PP_0362 -0.8 -6.5 Biotin synthase compare
PP_5546 -0.8 -1.4 conserved protein of unknown function compare
PP_1629 -0.8 -3.2 Protein RecA compare
PP_1366 -0.8 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_1233 -0.8 -3.9 sulfurtransferase compare
PP_1217 -0.8 -2.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3105 -0.8 -2.4 conserved membrane protein of unknown function compare
PP_1348 -0.8 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0593 -0.8 -1.2 putative ribosome-binding factor compare
PP_2322 -0.8 -3.3 Major outer membrane lipoprotein compare
PP_2389 -0.8 -2.1 conserved protein of unknown function compare
PP_2883 -0.7 -1.8 conserved protein of unknown function compare
PP_4098 -0.7 -1.2 UvrABC system protein C compare
PP_0365 -0.7 -5.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0848 -0.7 -2.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5575 -0.7 -2.3 conserved protein of unknown function compare
PP_1764 -0.7 -4.2 Phosphoglycolate phosphatase 2 compare
PP_4917 -0.7 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1761 -0.7 -5.4 diguanylate cyclase with phosphodiesterase domain compare
PP_1528 -0.7 -1.7 conserved protein of unknown function compare
PP_4199 -0.7 -1.1 putative Lipoprotein compare
PP_1783 -0.7 -1.3 dTDP-glucose pyrophosphorylase compare
PP_4317 -0.7 -2.7 conserved protein of unknown function compare
PP_4058 -0.7 -5.2 1,4-alpha-glucan branching enzyme compare
PP_0695 -0.7 -4.4 conserved protein of unknown function compare
PP_3102 -0.7 -3.0 conserved protein of unknown function compare
PP_0307 -0.7 -2.5 conserved exported protein of unknown function compare
PP_0003 -0.7 -1.9 16S RNA methyltransferase compare
PP_1654 -0.7 -2.8 cysteine synthase B compare
PP_3507 -0.7 -5.1 Aerobic cobaltochelatase subunit CobN compare
PP_2880 -0.6 -2.4 Transcriptional regulator, TetR family compare
PP_2302 -0.6 -3.9 DNA-binding, ATP-dependent protease compare
PP_3789 -0.6 -3.6 putative Efflux transporter compare
PP_2543 -0.6 -5.2 gamma-aminobutyrate permease compare
PP_4122 -0.6 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1678 -0.6 -2.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0435 -0.6 -5.5 Peptidase, M23/M37 family compare
PP_5582 -0.6 -1.4 conserved protein of unknown function compare
PP_4940 -0.6 -3.4 Putative glycosyltransferase compare
PP_5331 -0.6 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_5007 -0.6 -1.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1589 -0.6 -4.0 uridylyltransferase compare
PP_0758 -0.6 -2.5 conserved protein of unknown function compare
PP_2794 -0.6 -2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2307 -0.6 -1.5 conserved protein of unknown function compare
PP_1677 -0.6 -2.8 Adenosyl-cobyric acid synthase compare
PP_1681 -0.6 -4.6 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4922 -0.6 -5.0 Phosphomethylpyrimidine synthase compare
PP_2378 -0.6 -1.4 Fe/S biogenesis protein NfuA compare
PP_2088 -0.6 -3.3 RNA polymerase sigma factor SigX compare
PP_2136 -0.6 -3.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4332 -0.6 -3.6 Chemotaxis protein CheW compare
PP_4832 -0.6 -2.5 Precorrin-6x reductase compare
PP_4827 -0.6 -4.5 Precorrin-2 C(20)-methyltransferase compare
PP_t57 -0.6 -2.4 tRNA-Arg compare
PP_3506 -0.6 -2.1 Magnesium chelatase, subunit ChII compare
PP_4984 -0.6 -4.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1675 -0.6 -4.2 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1026 -0.6 -2.2 Peptidase, M23/M37 family compare
PP_4826 -0.6 -3.8 Precorrin-3B C17-methyltransferase compare
PP_4944 -0.6 -2.0 Carbamoyltransferase compare
PP_0363 -0.6 -4.7 8-amino-7-oxononanoate synthase compare
PP_3590 -0.6 -4.1 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2793 -0.6 -1.8 Acyl-CoA dehydrogenase family protein compare
PP_4228 -0.6 -2.8 conserved protein of unknown function compare
PP_4804 -0.6 -1.6 RlpA-like lipoprotein compare
PP_0241 -0.6 -1.5 Transporter compare
PP_5583 -0.6 -1.1 conserved protein of unknown function compare
PP_4792 -0.6 -1.7 conserved exported protein of unknown function compare
PP_5008 -0.6 -1.8 Poly granule-associated protein compare
PP_4701 -0.6 -1.0 glucose-6-phosphate isomerase compare
PP_2324 -0.6 -3.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1362 -0.6 -2.6 pyruvate kinase II compare
PP_1926 -0.6 -2.6 putative phosphotyrosine-protein phosphatase compare
PP_2681 -0.6 -0.8 coenzyme PQQ synthesis protein D compare
PP_4684 -0.6 -3.6 conserved protein of unknown function with kinase-like domain compare
PP_2929 -0.6 -3.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1734 -0.6 -1.3 Probable septum site-determining protein MinC compare
PP_3649 -0.5 -1.8 Transcriptional regulator, GntR family compare
PP_2542 -0.5 -3.8 Transcriptional regulator, GntR family compare
PP_5083 -0.5 -2.5 putative Type IV pili biogenesis protein PilM compare
PP_4340 -0.5 -2.0 response regulator for chemotactic signal transduction compare
PP_5279 -0.5 -2.0 conserved protein of unknown function compare
PP_1020 -0.5 -1.6 putative glucose-6-phosphate 1-epimerase compare
PP_2474 -0.5 -2.0 Glutathione S-transferase family protein compare
PP_0002 -0.5 -3.3 probable chromosome partition protein compare
PP_4426 -0.5 -2.0 Amino acid ABC transporter, permease protein compare
PP_0693 -0.5 -4.2 conserved protein of unknown function compare
PP_0276 -0.5 -1.0 Transcriptional regulator, Cro/CI family compare
PP_1346 -0.5 -2.8 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4942 -0.5 -1.2 conserved protein of unknown function compare
PP_1036 -0.5 -2.2 membrane-bound lytic murein transglycosylase F compare
PP_1867 -0.5 -3.1 conserved protein of unknown function compare
PP_4828 -0.5 -1.0 Precorrin-8X methylmutase compare
PP_5000 -0.5 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_2375 -0.5 -4.1 cobalamin-dependent methionine synthase compare
PP_1575 -0.5 -1.7 conserved protein of unknown function compare
PP_0364 -0.5 -3.4 pimeloyl-[acp] methyl ester esterase compare
PP_5035 -0.5 -2.9 Histidine utilization repressor compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source 4-Aminobutyric acid across organisms