Experiment set27IT015 for Pseudomonas putida KT2440

Compare to:

4-aminobutyric acid nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_0166 +0.7 6.6 HlyD family secretion protein compare
PP_1812 +0.7 3.5 conserved protein of unknown function compare
PP_0856 +0.7 2.1 conserved lipoprotein of unknown function compare
PP_0168 +0.7 6.4 putative surface adhesion protein compare
PP_5054 +0.7 1.6 glutaredoxin 3 compare
PP_4373 +0.7 5.8 Transcriptional regulator FleQ compare
PP_2499 +0.6 1.9 conserved protein of unknown function compare
PP_1466 +0.6 3.8 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2889 +0.6 3.7 putative Transmembrane regulator PrtR compare
PP_0167 +0.6 5.8 Toxin secretion ATP-binding protein compare
PP_4342 +0.6 2.4 flagellar synthesis regulator, putative ATPase compare
PP_4171 +0.6 5.7 conserved exported protein of unknown function compare
PP_1186 +0.6 1.8 two component system DNA-binding transcriptional dual regulator compare
PP_2550 +0.6 2.3 putative transcriptional regulatory protein compare
PP_0165 +0.6 5.4 GGDEF domain protein compare
PP_5717 +0.6 1.7 conserved protein of unknown function compare
PP_1655 +0.6 3.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3580 +0.6 1.7 conserved protein of unknown function compare
PP_5053 +0.6 3.9 Protein-export protein SecB compare
PP_4519 +0.6 4.8 Agglutination protein compare
PP_2387 +0.5 1.7 conserved protein of unknown function compare
PP_5429 +0.5 3.4 protein of unknown function compare
PP_1562 +0.5 2.0 putative Phage terminase, small subunit compare
PP_2319 +0.5 2.5 conserved protein of unknown function compare
PP_1054 +0.5 1.8 Type II secretion pathway protein XcpZ compare
PP_2330 +0.5 3.3 conserved protein of unknown function compare
PP_0048 +0.5 1.3 conserved protein of unknown function compare
PP_2756 +0.5 2.3 conserved protein of unknown function compare
PP_3280 +0.5 2.3 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_0001 +0.5 0.7 probable chromosome-partitioning protein compare
PP_4528 +0.5 1.8 conserved protein of unknown function compare
PP_2147 +0.5 1.8 conserved exported protein of unknown function compare
PP_0401 +0.5 1.0 Ribosomal RNA small subunit methyltransferase A compare
PP_4642 +0.5 0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_3519 +0.5 1.1 putative Lipoprotein compare
PP_1503 +0.4 1.5 conserved protein of unknown function compare
PP_3052 +0.4 1.0 conserved protein of unknown function compare
PP_1650 +0.4 4.1 Sensor protein GacS compare
PP_2650 +0.4 1.0 putative 4-hydroxybutyrate dehydrogenase compare
PP_2332 +0.4 3.4 conserved exported protein of unknown function compare
PP_1237 +0.4 1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5093 +0.4 1.4 twitching motility protein compare
PP_2903 +0.4 1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3831 +0.4 3.4 conserved protein of unknown function compare
PP_3808 +0.4 1.2 Antibiotic synthesis protein MbtH compare
PP_4133 +0.4 1.4 Transcriptional regulator-related protein compare
PP_1758 +0.4 2.5 putative sulfurtransferase containing rhodanese-like domain compare
PP_2946 +0.4 2.5 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_2712 +0.4 2.1 conserved exported protein of unknown function compare
PP_3682 +0.4 2.6 conserved protein of unknown function compare
PP_2898 +0.4 1.4 conserved exported protein of unknown function compare
PP_2360 +0.4 2.4 putative type 1 pili subunit CsuA/B protein compare
PP_5143 +0.4 1.4 conserved membrane protein of unknown function compare
PP_4994 +0.4 2.7 conserved protein of unknown function compare
PP_4296 +0.4 1.4 conserved exported protein of unknown function compare
PP_1113 +0.4 3.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0385 +0.4 2.6 putative serine acetyltransferase compare
PP_1513 +0.4 1.4 Ribosomal RNA small subunit methyltransferase J compare
PP_4005 +0.4 1.7 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_3935 +0.4 1.3 conserved protein of unknown function compare
PP_4502 +0.4 2.4 putative enzyme compare
PP_2858 +0.4 1.6 conserved exported protein of unknown function compare
PP_5145 +0.4 3.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4720 +0.4 1.0 putative RNA binding protein compare
PP_3198 +0.4 1.5 Ferredoxin, 2Fe-2S compare
PP_3837 +0.4 1.8 inner membrane protein of unknown function compare
PP_4349 +0.4 2.6 conserved protein of unknown function compare
PP_5597 +0.4 2.0 conserved protein of unknown function compare
PP_5453 +0.4 0.8 conserved protein of unknown function compare
PP_2194 +0.4 2.4 Transcriptional regulator, LysR family compare
PP_0191 +0.4 1.5 Transcriptional regulatory protein AlgQ compare
PP_1255 +0.4 1.7 putative cis-4-hydroxy-D-proline oxidase compare
PP_2885 +0.4 2.1 putative Transporter compare
PP_5225 +0.4 0.9 frataxin compare
PP_3474 +0.4 2.2 putative Curli fiber protein CsgE compare
PP_2777 +0.4 2.0 putative Acyl carrier protein compare
PP_2511 +0.4 1.5 conserved protein of unknown function compare
PP_2568 +0.3 0.9 Ring-cleaving dioxygenase compare
PP_5543 +0.3 2.3 protein of unknown function compare
PP_2132 +0.3 1.5 Universal stress protein compare
PP_0547 +0.3 1.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4213 +0.3 1.2 putative dipeptidase compare
PP_2759 +0.3 1.8 ribose ABC transporter - ATP-binding subunit compare
PP_2280 +0.3 1.1 conserved protein of unknown function compare
PP_5052 +0.3 1.5 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_5430 +0.3 1.3 protein of unknown function compare
PP_1876 +0.3 2.0 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1099 +0.3 1.2 Cold shock protein CapB compare
PP_0087 +0.3 1.4 conserved exported protein of unknown function compare
PP_2999 +0.3 0.9 Glyoxalase family protein compare
PP_0232 +0.3 0.9 ATP-binding taurine transporter subunit compare
PP_5309 +0.3 0.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_t49 +0.3 1.4 tRNA-Met compare
PP_4207 +0.3 1.2 conserved protein of unknown function compare
PP_4449 +0.3 1.8 conserved protein of unknown function compare
PP_2503 +0.3 1.7 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0959 +0.3 0.9 phospholipid ABC transporter compare
PP_0960 +0.3 1.7 phospholipid ABC transporter binding protein compare
PP_2060 +0.3 1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0629 +0.3 1.9 conserved membrane protein of unknown function compare
PP_0577 +0.3 2.3 conserved protein of unknown function compare
PP_0089 +0.3 2.1 stress-induced peroxiredoxin, lipoyl-dependent peroxidase compare
PP_1935 +0.3 1.1 Transcriptional regulator, Cro/CI family compare
PP_1568 +0.3 0.7 conserved protein of unknown function compare
PP_2716 +0.3 1.4 arsenate reductase compare
PP_5200 +0.3 2.3 proline aminopeptidase P II compare
PP_0711 +0.3 1.2 putative hydrolase compare
PP_1147 +0.3 1.7 conserved protein of unknown function compare
PP_5445 +0.3 1.4 conserved protein of unknown function compare
PP_0781 +0.3 1.6 conserved protein of unknown function compare
PP_5274 +0.3 0.9 conserved protein of unknown function compare
PP_0677 +0.3 1.8 putative Lipoprotein compare
PP_3243 +0.3 1.4 Acetyltransferase, GNAT family compare
PP_4196 +0.3 0.7 conserved exported protein of unknown function compare
PP_2191 +0.3 1.8 putative Lipoprotein compare
PP_0257 +0.3 2.0 protein sulfur transferase compare
PP_0925 +0.3 1.9 conserved protein of unknown function compare
PP_3938 +0.3 1.2 conserved protein of unknown function compare
PP_0574 +0.3 2.6 DNA-binding response regulator, LuxR family compare
PP_1842 +0.3 1.9 Glutamine amidotransferase, class I compare
PP_2101 +0.3 1.5 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_4556 +0.3 1.1 conserved protein of unknown function compare
PP_4629 +0.3 1.7 Sensory box protein compare
PP_4471 +0.3 0.9 Magnesium transporter compare
PP_4645 +0.3 1.2 Large-conductance mechanosensitive channel compare
PP_0319 +0.3 0.5 conserved protein of unknown function compare
PP_4961 +0.3 1.0 putative Lipoprotein compare
PP_5073 +0.3 0.9 conserved exported protein of unknown function compare
PP_2615 +0.3 0.9 hemolysin-coregulated protein compare
PP_4266 +0.3 1.3 Adenine phosphoribosyltransferase compare
PP_2726 +0.3 1.7 conserved membrane protein of unknown function compare
PP_1683 +0.3 0.6 Transcriptional regulator, MarR family compare
PP_2441 +0.3 1.3 conserved protein of unknown function compare
PP_1164 +0.3 1.1 Transcriptional regulator, LysR family compare
PP_4390 +0.3 2.0 flagellar basal-body rod protein FlgC compare
PP_1554 +0.3 1.4 conserved protein of unknown function compare
PP_5621 +0.3 1.2 protein of unknown function compare
PP_2939 +0.3 1.6 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_1473 +0.3 1.5 conserved protein of unknown function compare
PP_1484 +0.3 1.9 predicted polyamine ABC transporter, ATP-binding protein compare
PP_4835 +0.3 1.2 conserved exported protein of unknown function compare
PP_5654 +0.3 0.6 putative phosphotriesterase compare
PP_5723 +0.3 1.7 protein of unknown function compare
PP_4126 +0.3 0.7 NADH-quinone oxidoreductase subunit I compare
PP_0063 +0.3 1.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4159 +0.3 0.7 Potassium-transporting ATPase C chain compare
PP_5475 +0.3 0.8 conserved protein of unknown function compare
PP_3185 +0.3 1.3 Pet18 protein compare
PP_3883 +0.3 1.1 putative Phage holin compare
PP_1874 +0.3 1.8 Hydroperoxy fatty acid reductase gpx1 compare
PP_5037 +0.3 1.9 lipocalin family lipoprotein compare
PP_4384 +0.3 2.2 Flagellar L-ring protein compare
PP_4470 +0.3 1.4 putative transcriptional regulator (Arc domain-containing) compare
PP_1087 +0.3 1.7 Outer membrane protein, OmpA family compare
PP_2397 +0.3 1.2 EF hand domain protein compare
PP_0703 +0.3 1.4 putative Transmembrane sensor compare
PP_0333 +0.3 1.8 conserved exported protein of unknown function compare
PP_2838 +0.3 2.1 conserved protein of unknown function compare
PP_0643 +0.3 1.2 protein of unknown function compare
PP_2537 +0.3 1.7 conserved protein of unknown function compare
PP_0989 +0.3 1.2 glycine cleavage system H protein 1 compare
PP_0367 +0.3 1.8 conserved protein of unknown function compare
PP_5608 +0.3 1.6 putative exported protein compare
PP_2899 +0.3 0.7 conserved exported protein of unknown function compare
PP_3034 +0.3 0.7 putative Regulator protein compare
PP_3143 +0.3 1.5 Transcriptional regulator, LysR family compare
PP_5645 +0.3 1.8 conserved protein of unknown function compare
PP_5176 +0.3 0.9 conserved protein of unknown function compare
PP_3908 +0.3 1.5 conserved protein of unknown function compare
PP_1566 +0.3 1.7 Peptidase U35 compare
PP_0607 +0.2 1.0 putative Type IV pili biogenesis protein FimT compare
PP_4926 +0.2 1.8 HlyD family secretion protein compare
PP_3814 +0.2 1.6 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_5625 +0.2 1.5 conserved protein of unknown function compare
PP_1428 +0.2 0.8 Sigma factor AlgU negative regulatory protein compare
PP_2760 +0.2 1.6 putative ribose transport permease protein compare
PP_0150 +0.2 0.9 conserved exported protein of unknown function compare
PP_4785 +0.2 1.5 conserved exported protein of unknown function compare
PP_4388 +0.2 2.2 Flagellar hook protein FlgE compare
PP_2396 +0.2 1.4 conserved exported protein of unknown function compare
PP_0352 +0.2 1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3610 +0.2 1.6 conserved protein of unknown function compare
PP_0948 +0.2 1.0 Phosphocarrier protein HPr compare
PP_1489 +0.2 1.3 CheW domain protein compare
PP_5500 +0.2 0.8 protein of unknown function compare
PP_4385 +0.2 1.4 flagellar basal-body rod protein FlgG compare
PP_3024 +0.2 1.6 conserved protein of unknown function compare
PP_0091 +0.2 1.7 putative lipoprotein compare
PP_2313 +0.2 0.6 conserved membrane protein of unknown function compare
PP_5502 +0.2 1.6 ribosome modulation factor compare
PP_1748 +0.2 1.4 conserved protein of unknown function compare
PP_3946 +0.2 0.7 HTH-type transcriptional repressor NicR compare
PP_0271 +0.2 1.6 DNA-binding response regulator compare
PP_4899 +0.2 1.8 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
PP_4099 +0.2 2.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5407 +0.2 1.4 Transposition protein, TnsD-related protein compare
PP_2622 +0.2 1.3 conserved protein of unknown function compare
PP_2000 +0.2 0.3 amidophosphoribosyl transferase compare
PP_1583 +0.2 1.1 putative Structural protein P5 compare
PP_2721 +0.2 1.1 conserved membrane protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source 4-Aminobutyric acid across organisms