Experiment set27IT014 for Pseudomonas putida KT2440

Compare to:

4-aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.3 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -6.8 -6.6 Carbamoyl-phosphate synthase small chain compare
PP_5014 -6.7 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0127 -6.6 -8.7 Thiol:disulfide interchange protein compare
PP_0290 -6.2 -11.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1231 -6.2 -9.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0184 -6.0 -5.9 Argininosuccinate lyase compare
PP_0966 -6.0 -15.4 Histidinol dehydrogenase compare
PP_4909 -6.0 -10.7 phosphoserine phosphatase compare
PP_0082 -5.9 -8.1 tryptophan synthase alpha chain compare
PP_1988 -5.9 -13.1 3-isopropylmalate dehydrogenase compare
PP_1079 -5.8 -10.4 Ornithine carbamoyltransferase compare
PP_4678 -5.8 -20.2 Ketol-acid reductoisomerase compare
PP_4723 -5.7 -16.5 Carbamoyl-phosphate synthase large chain compare
PP_0787 -5.7 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0083 -5.7 -8.7 tryptophan synthase beta chain compare
PP_5015 -5.6 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4364 -5.6 -5.4 putative Anti-sigma F factor antagonist compare
PP_0420 -5.5 -17.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -5.5 -9.5 Indole-3-glycerol phosphate synthase compare
PP_1088 -5.4 -14.8 Argininosuccinate synthase compare
PP_4679 -5.3 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -5.3 -19.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.2 -7.2 Acetylglutamate kinase compare
PP_1985 -5.2 -7.2 3-isopropylmalate dehydratase large subunit compare
PP_0417 -5.2 -21.8 Anthranilate synthase component 1 compare
PP_0967 -5.2 -13.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -5.2 -9.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -5.2 -12.4 Branched-chain-amino-acid aminotransferase compare
PP_1995 -5.1 -12.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -5.0 -8.5 Anthranilate phosphoribosyltransferase compare
PP_5185 -4.9 -9.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -4.8 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -4.7 -11.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0292 -4.7 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0809 -4.7 -16.1 disulfide bond formation protein B compare
PP_1986 -4.6 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_3999 -4.5 -8.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0164 -4.4 -8.4 conserved protein of unknown function compare
PP_5097 -4.4 -18.9 homoserine O-acetyltransferase compare
PP_2371 -4.3 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5128 -4.1 -10.2 Dihydroxy-acid dehydratase compare
PP_4700 -4.0 -3.9 pantothenate synthetase compare
PP_2001 -3.8 -11.6 O-succinylhomoserine sulfhydrylase compare
PP_5155 -3.8 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2327 -3.8 -9.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -3.8 -14.7 2-isopropylmalate synthase compare
PP_5098 -3.7 -11.7 methionine biosynthesis protein MetW compare
PP_4999 -3.6 -2.5 dihydroorotase-like protein compare
PP_0691 -3.3 -6.2 Glutamate 5-kinase compare
PP_0339 -3.2 -5.3 Pyruvate dehydrogenase E1 component compare
PP_1664 -3.2 -5.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_2388 -3.1 -5.7 Transporter, LysE family compare
PP_2390 -2.9 -11.5 Transcriptional regulator, LysR family compare
PP_2370 -2.9 -2.6 conserved protein of unknown function compare
PP_2328 -2.9 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_5303 -2.7 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1912 -2.6 -8.1 Phosphate acyltransferase compare
PP_5095 -2.3 -2.2 pyrroline-5-carboxylate reductase compare
PP_1022 -2.3 -6.8 glucose 6-phosphate-1-dehydrogenase compare
PP_0291 -2.3 -2.4 conserved protein of unknown function compare
PP_3821 -2.3 -11.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0833 -2.2 -3.8 queuine tRNA-ribosyltransferase compare
PP_4004 -2.1 -5.4 DNA translocase FtsK compare
PP_5350 -2.1 -6.4 Transcriptional regulator, RpiR family compare
PP_3484 -2.1 -3.9 Response regulator receiver protein compare
PP_0214 -2.0 -6.9 4-aminobutyrate aminotransferase compare
PP_4943 -1.9 -3.6 putative Glycosyl transferase compare
PP_4940 -1.6 -7.3 Putative glycosyltransferase compare
PP_4964 -1.6 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_5227 -1.6 -8.3 diaminopimelate decarboxylase compare
PP_1994 -1.5 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4696 -1.5 -5.4 Nitrogen regulation protein NR(I) compare
PP_1426 -1.5 -10.6 L-aspartate oxidase compare
PP_0393 -1.4 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4804 -1.4 -2.2 RlpA-like lipoprotein compare
PP_0914 -1.3 -10.1 GGDEF domain protein compare
PP_4693 -1.3 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_2378 -1.3 -2.5 Fe/S biogenesis protein NfuA compare
PP_1217 -1.2 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1468 -1.2 -3.5 Tyrosine recombinase XerD compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0735 -1.2 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_1770 -1.2 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1216 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1734 -1.1 -2.5 Probable septum site-determining protein MinC compare
PP_3790 -1.1 -7.7 diaminopimelate epimerase compare
PP_1493 -1.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5331 -1.0 -3.1 Long-chain acyl-CoA thioester hydrolase compare
PP_1215 -1.0 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_5328 -1.0 -2.6 putative phosphate transport system permease protein compare
PP_1654 -1.0 -3.9 cysteine synthase B compare
PP_3102 -1.0 -4.1 conserved protein of unknown function compare
PP_5628 -0.9 -2.1 conserved protein of unknown function compare
PP_4782 -0.9 -4.9 Phosphomethylpyrimidine kinase compare
PP_3508 -0.9 -3.7 Protein CobW compare
PP_1761 -0.9 -7.5 diguanylate cyclase with phosphodiesterase domain compare
PP_3506 -0.9 -4.4 Magnesium chelatase, subunit ChII compare
PP_2414 -0.9 -0.8 conserved exported protein of unknown function compare
PP_1679 -0.9 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2389 -0.9 -2.7 conserved protein of unknown function compare
PP_0365 -0.9 -6.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0673 -0.9 -1.3 conserved protein of unknown function compare
PP_5104 -0.9 -4.5 thiazole synthase compare
PP_5048 -0.9 -4.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1348 -0.9 -5.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2168 -0.9 -6.3 Transaldolase compare
PP_1110 -0.8 -3.9 serine acetyltransferase compare
PP_1589 -0.8 -4.9 uridylyltransferase compare
PP_1672 -0.8 -3.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3105 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_1128 -0.8 -1.6 OmpA family protein compare
PP_1629 -0.8 -3.0 Protein RecA compare
PP_4984 -0.8 -5.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0363 -0.7 -6.3 8-amino-7-oxononanoate synthase compare
PP_1366 -0.7 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0366 -0.7 -4.0 dethiobiotin synthetase compare
PP_0362 -0.7 -5.9 Biotin synthase compare
PP_4273 -0.7 -1.6 Transcriptional regulator, MerR family compare
PP_0758 -0.7 -3.2 conserved protein of unknown function compare
PP_4690 -0.7 -3.2 Rieske 2Fe-2S family protein compare
PP_4829 -0.7 -2.4 putative precorrin-3B synthase compare
PP_1681 -0.7 -4.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4832 -0.7 -2.5 Precorrin-6x reductase compare
PP_4199 -0.7 -1.1 putative Lipoprotein compare
PP_2322 -0.7 -3.2 Major outer membrane lipoprotein compare
PP_1233 -0.6 -3.3 sulfurtransferase compare
PP_1304 -0.6 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1362 -0.6 -2.3 pyruvate kinase II compare
PP_3789 -0.6 -3.2 putative Efflux transporter compare
PP_4826 -0.6 -3.3 Precorrin-3B C17-methyltransferase compare
PP_4827 -0.6 -4.8 Precorrin-2 C(20)-methyltransferase compare
PP_4847 -0.6 -2.6 chaperone modulatory of CbpA co-chaperone protein compare
PP_4917 -0.6 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0435 -0.6 -5.2 Peptidase, M23/M37 family compare
PP_1675 -0.6 -3.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2307 -0.6 -0.9 conserved protein of unknown function compare
PP_0377 -0.6 -1.3 coenzyme PQQ synthesis protein D compare
PP_0313 -0.6 -1.9 putative electron transfer flavoprotein beta subunit compare
PP_4546 -0.6 -2.4 ATP-dependent helicase HrpA compare
PP_4880 -0.6 -2.2 exoribonuclease R compare
PP_4910 -0.6 -1.1 conserved protein of unknown function compare
PP_4722 -0.6 -2.9 Transcription elongation factor GreA compare
PP_5110 -0.6 -2.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0195 -0.6 -1.1 conserved protein of unknown function compare
PP_1804 -0.6 -4.2 Glycosyl transferase WbpL compare
PP_4358 -0.6 -3.4 flagellar synthesis, switching and energizing component compare
PP_5230 -0.6 -2.2 Tyrosine recombinase XerC compare
PP_0364 -0.6 -4.1 pimeloyl-[acp] methyl ester esterase compare
PP_4828 -0.6 -1.1 Precorrin-8X methylmutase compare
PP_1783 -0.6 -1.1 dTDP-glucose pyrophosphorylase compare
PP_4938 -0.6 -3.9 putative Glycosyl transferase compare
PP_2088 -0.6 -1.8 RNA polymerase sigma factor SigX compare
PP_2794 -0.6 -1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3507 -0.6 -4.6 Aerobic cobaltochelatase subunit CobN compare
PP_4922 -0.6 -4.2 Phosphomethylpyrimidine synthase compare
PP_1674 -0.6 -2.1 5,6-dimethylbenzimidazole synthase compare
PP_4699 -0.6 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5310 -0.6 -1.8 junction-specific ATP-dependent DNA helicase compare
PP_5661 -0.6 -3.0 putative lipoprotein compare
PP_4684 -0.6 -3.5 conserved protein of unknown function with kinase-like domain compare
PP_1303 -0.5 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_2031 -0.5 -1.3 conserved protein of unknown function compare
PP_4517 -0.5 -1.8 conserved protein of unknown function compare
PP_5279 -0.5 -2.1 conserved protein of unknown function compare
PP_1553 -0.5 -1.5 conserved protein of unknown function compare
PP_4126 -0.5 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_3505 -0.5 -1.3 conserved protein of unknown function compare
PP_1346 -0.5 -2.0 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_3241 -0.5 -1.1 conserved exported protein of unknown function compare
PP_3590 -0.5 -3.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2633 -0.5 -1.6 conserved protein of unknown function compare
PP_5604 -0.5 -1.6 putative subtilisin-like serine protease compare
PP_5035 -0.5 -3.0 Histidine utilization repressor compare
PP_4977 -0.5 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_5352 -0.5 -4.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5216 -0.5 -1.4 exopolyphosphatase compare
PP_2929 -0.5 -3.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0261 -0.5 -3.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3339 -0.5 -2.8 conserved exported protein of unknown function compare
PP_1800 -0.5 -3.9 Oxidoreductase Rmd compare
PP_1109 -0.5 -3.7 Transcriptional regulator, GntR family compare
PP_4098 -0.5 -1.0 UvrABC system protein C compare
PP_2462 -0.5 -1.6 conserved protein of unknown function compare
PP_3409 -0.5 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_1802 -0.5 -4.3 glycosyl transferase compare
PP_2581 -0.5 -1.6 conserved protein of unknown function compare
PP_2306 -0.5 -1.5 conserved exported protein of unknown function compare
PP_5047 -0.5 -2.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0319 -0.5 -1.1 conserved protein of unknown function compare
PP_2540 -0.5 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2302 -0.5 -3.0 DNA-binding, ATP-dependent protease compare
PP_4482 -0.5 -1.7 Transcriptional regulator, AraC family compare
PP_5575 -0.5 -1.6 conserved protein of unknown function compare
PP_5329 -0.5 -1.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2542 -0.5 -3.4 Transcriptional regulator, GntR family compare
PP_3903 -0.5 -1.4 conserved protein of unknown function compare
PP_4379 -0.5 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4247 -0.5 -1.4 Exonuclease compare
PP_3899 -0.5 -1.7 conserved protein of unknown function, hicB family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source 4-Aminobutyric acid across organisms