Experiment set27IT013 for Pseudomonas putida KT2440

Compare to:

Valerolactam nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.4 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -7.3 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_1986 -6.7 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_0082 -6.4 -6.2 tryptophan synthase alpha chain compare
PP_4678 -6.3 -19.2 Ketol-acid reductoisomerase compare
PP_4909 -6.3 -9.7 phosphoserine phosphatase compare
PP_0422 -6.2 -8.5 Indole-3-glycerol phosphate synthase compare
PP_1988 -6.2 -12.5 3-isopropylmalate dehydrogenase compare
PP_0083 -6.1 -7.3 tryptophan synthase beta chain compare
PP_0292 -6.0 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -5.9 -16.1 Histidinol dehydrogenase compare
PP_1079 -5.9 -9.4 Ornithine carbamoyltransferase compare
PP_0967 -5.9 -15.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -5.9 -19.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5098 -5.9 -12.0 methionine biosynthesis protein MetW compare
PP_1995 -5.8 -12.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -5.8 -16.2 Carbamoyl-phosphate synthase large chain compare
PP_5289 -5.7 -6.8 Acetylglutamate kinase compare
PP_5185 -5.7 -7.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -5.7 -13.7 Argininosuccinate synthase compare
PP_4724 -5.6 -9.3 Carbamoyl-phosphate synthase small chain compare
PP_0420 -5.6 -16.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -5.5 -12.3 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.5 -11.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -5.5 -16.2 Transaldolase compare
PP_5128 -5.3 -9.1 Dihydroxy-acid dehydratase compare
PP_0184 -5.3 -8.8 Argininosuccinate lyase compare
PP_5048 -5.2 -8.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0289 -5.1 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -5.0 -4.9 Glutamate 5-kinase compare
PP_0417 -5.0 -19.9 Anthranilate synthase component 1 compare
PP_5097 -5.0 -17.7 homoserine O-acetyltransferase compare
PP_0965 -4.9 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4679 -4.8 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1231 -4.8 -9.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3516 -4.7 -8.7 Transcriptional regulator, AraC family compare
PP_5015 -4.7 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2001 -4.6 -9.6 O-succinylhomoserine sulfhydrylase compare
PP_2371 -4.4 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -4.3 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4890 -4.3 -10.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_4700 -4.2 -2.9 pantothenate synthetase compare
PP_0421 -4.2 -9.2 Anthranilate phosphoribosyltransferase compare
PP_3515 -4.1 -13.5 5-oxoprolinase A compare
PP_3999 -4.1 -10.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0214 -4.0 -11.0 4-aminobutyrate aminotransferase compare
PP_0787 -4.0 -7.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5047 -3.8 -9.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5155 -3.7 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3514 -3.6 -11.1 5-oxoprolinase B compare
PP_4999 -3.6 -2.5 dihydroorotase-like protein compare
PP_5095 -3.6 -2.4 pyrroline-5-carboxylate reductase compare
PP_1589 -3.6 -13.5 uridylyltransferase compare
PP_1025 -3.3 -10.1 2-isopropylmalate synthase compare
PP_2327 -3.0 -11.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2088 -2.9 -5.9 RNA polymerase sigma factor SigX compare
PP_4696 -2.7 -8.7 Nitrogen regulation protein NR(I) compare
PP_2328 -2.7 -8.6 Phosphoadenosine phosphosulfate reductase compare
PP_1912 -2.6 -7.3 Phosphate acyltransferase compare
PP_2370 -2.6 -3.5 conserved protein of unknown function compare
PP_4058 -2.5 -13.8 1,4-alpha-glucan branching enzyme compare
PP_0291 -2.2 -2.6 conserved protein of unknown function compare
PP_5346 -2.1 -11.5 pyruvate carboxylase subunit B compare
PP_5347 -2.0 -12.2 pyruvate carboxylase subunit A compare
PP_4693 -2.0 -4.6 RNA polymerase-binding transcription factor DksA compare
PP_1468 -2.0 -2.4 Tyrosine recombinase XerD compare
PP_4364 -2.0 -6.3 putative Anti-sigma F factor antagonist compare
PP_5303 -1.9 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5227 -1.8 -9.3 diaminopimelate decarboxylase compare
PP_4199 -1.8 -2.1 putative Lipoprotein compare
PP_4699 -1.7 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0213 -1.7 -4.1 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_4964 -1.7 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_3790 -1.6 -9.8 diaminopimelate epimerase compare
PP_4004 -1.6 -4.6 DNA translocase FtsK compare
PP_5348 -1.6 -8.5 Transcriptional regulator, LysR family compare
PP_1826 -1.4 -3.7 Hydrolase, isochorismatase family compare
PP_1110 -1.4 -3.3 serine acetyltransferase compare
PP_1216 -1.3 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4379 -1.3 -6.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5114 -1.2 -1.9 putative adenine methyltransferase compare
PP_1664 -1.2 -4.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1109 -1.2 -9.0 Transcriptional regulator, GntR family compare
PP_3776 -1.2 -7.7 putative permease (RarD protein) compare
PP_1994 -1.2 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_2910 -1.2 -8.3 L-2-hydroxyglutarate oxidase compare
PP_4695 -1.1 -8.0 Sensory box histidine kinase compare
PP_0025 -1.1 -1.9 hypothetical protein compare
PP_1111 -1.1 -6.3 putative Synthetase compare
PP_1733 -1.1 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3755 -1.1 -5.3 3-hydroxybutyryl-CoA dehydrogenase compare
PP_1215 -1.1 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1656 -1.1 -4.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_1022 -1.0 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_0735 -1.0 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_0362 -1.0 -7.9 Biotin synthase compare
PP_1036 -1.0 -3.9 membrane-bound lytic murein transglycosylase F compare
PP_3415 -1.0 -5.3 Transcriptional regulator, LacI family compare
PP_1426 -0.9 -7.4 L-aspartate oxidase compare
PP_0339 -0.9 -3.5 Pyruvate dehydrogenase E1 component compare
PP_0833 -0.9 -1.8 queuine tRNA-ribosyltransferase compare
PP_0846 -0.9 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_1055 -0.9 -2.1 Type II secretion pathway protein GspN compare
PP_1326 -0.9 -3.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1654 -0.9 -3.5 cysteine synthase B compare
PP_5507 -0.9 -1.8 protein of unknown function compare
PP_1142 -0.9 -1.7 conserved protein of unknown function compare
PP_2433 -0.9 -2.1 conserved protein of unknown function compare
PP_4060 -0.9 -7.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3105 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_0164 -0.8 -4.3 conserved protein of unknown function compare
PP_5104 -0.8 -5.1 thiazole synthase compare
PP_3754 -0.8 -3.2 Beta-ketothiolase BktB compare
PP_4782 -0.8 -4.2 Phosphomethylpyrimidine kinase compare
PP_1198 -0.8 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1128 -0.8 -1.7 OmpA family protein compare
PP_5216 -0.8 -1.7 exopolyphosphatase compare
PP_2929 -0.8 -5.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1217 -0.8 -2.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1233 -0.8 -3.5 sulfurtransferase compare
PP_1679 -0.8 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0393 -0.8 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0261 -0.8 -4.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2883 -0.7 -2.4 conserved protein of unknown function compare
PP_5338 -0.7 -1.5 aspartate ammonia-lyase compare
PP_1366 -0.7 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_0127 -0.7 -3.1 Thiol:disulfide interchange protein compare
PP_5453 -0.7 -1.7 conserved protein of unknown function compare
PP_5528 -0.7 -2.5 conserved protein of unknown function compare
PP_5571 -0.7 -1.6 conserved protein of unknown function compare
PP_5217 -0.7 -6.5 Polyphosphate kinase compare
PP_4874 -0.7 -1.1 50S ribosomal protein L9 compare
PP_4480 -0.7 -4.9 arginine N-succinyltransferase, subunit alpha compare
PP_1493 -0.7 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4129 -0.7 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3789 -0.7 -3.5 putative Efflux transporter compare
PP_5328 -0.7 -1.8 putative phosphate transport system permease protein compare
PP_2309 -0.7 -1.4 conserved protein of unknown function compare
PP_4726 -0.7 -2.0 Chaperone protein DnaJ compare
PP_4944 -0.6 -2.2 Carbamoyltransferase compare
PP_4122 -0.6 -1.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5456 -0.6 -0.7 conserved protein of unknown function compare
PP_0949 -0.6 -3.9 putative ATP-binding protein UPF0042 compare
PP_1268 -0.6 -1.9 putative HtrA suppressor protein sohA compare
PP_2030 -0.6 -2.7 conserved protein of unknown function compare
PP_4121 -0.6 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_5230 -0.6 -1.8 Tyrosine recombinase XerC compare
PP_3378 -0.6 -1.7 putative 2-ketogluconokinase compare
PP_0880 -0.6 -2.3 dipeptide ABC transporter - putative membrane subunit compare
PP_0413 -0.6 -5.1 Polyamine ABC transporter, permease protein compare
PP_2217 -0.6 -2.5 enoyl-CoA hydratase compare
PP_0881 -0.6 -3.1 dipeptide ABC transporter - putative membrane subunit compare
PP_3924 -0.6 -2.9 conserved protein of unknown function compare
PP_2414 -0.6 -2.0 conserved exported protein of unknown function compare
PP_2920 -0.6 -3.4 putative nitrogen-containing compound degradation enzyme compare
PP_4922 -0.6 -4.9 Phosphomethylpyrimidine synthase compare
PP_4102 -0.6 -2.8 conserved protein of unknown function compare
PP_4517 -0.6 -1.0 conserved protein of unknown function compare
PP_5076 -0.6 -5.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_3506 -0.6 -2.9 Magnesium chelatase, subunit ChII compare
PP_5350 -0.6 -2.3 Transcriptional regulator, RpiR family compare
PP_2044 -0.6 -1.9 conserved inner membrane protein of unknown function compare
PP_0406 -0.6 -2.4 Nucleotidyltransferase family protein compare
PP_2345 -0.6 -1.9 conserved exported protein of unknown function compare
PP_3376 -0.6 -3.0 putative phosphonate dehydrogenase compare
PP_1783 -0.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_4247 -0.5 -1.6 Exonuclease compare
PP_4980 -0.5 -3.8 ATP-dependent RNA helicase compare
PP_t29 -0.5 -0.9 tRNA-Ala compare
PP_2575 -0.5 -1.5 conserved exported protein of unknown function compare
PP_0809 -0.5 -4.4 disulfide bond formation protein B compare
PP_4500 -0.5 -2.3 TrpH family protein compare
PP_0414 -0.5 -3.2 Polyamine ABC transporter, permease protein compare
PP_4126 -0.5 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4952 -0.5 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5075 -0.5 -4.3 glutamate synthase (NADPH) beta subunit compare
PP_1303 -0.5 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_1672 -0.5 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3232 -0.5 -2.4 Acetyltransferase, GNAT family compare
PP_1021 -0.5 -3.3 DNA-binding transcriptional regulator compare
PP_1675 -0.5 -3.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4131 -0.5 -2.6 NADH-quinone oxidoreductase subunit N compare
PP_4701 -0.5 -0.9 glucose-6-phosphate isomerase compare
PP_5090 -0.5 -1.1 putative cell division protein compare
PP_3777 -0.5 -2.9 conserved protein of unknown function compare
PP_5313 -0.5 -1.8 DNA-binding protein HU-alpha compare
PP_0653 -0.5 -1.2 conserved protein of unknown function compare
PP_2417 -0.5 -2.1 putative Iron ABC transporter, permease protein compare
PP_4684 -0.5 -3.3 conserved protein of unknown function with kinase-like domain compare
PP_2928 -0.5 -3.2 Saccharopine dehydrogenase compare
PP_0630 -0.5 -1.0 DNA gyrase inhibitor YacG compare
PP_4317 -0.5 -2.0 conserved protein of unknown function compare
PP_2474 -0.5 -2.4 Glutathione S-transferase family protein compare
PP_2568 -0.5 -1.1 Ring-cleaving dioxygenase compare
PP_4671 -0.5 -2.0 conserved exported protein of unknown function compare
PP_2375 -0.5 -4.0 cobalamin-dependent methionine synthase compare
PP_0246 -0.5 -1.7 two-component system DNA-binding response transcriptional dual regulator compare
PP_1445 -0.5 -3.5 carbohydrate-selective porin compare
PP_5146 -0.5 -3.4 RNA pyrophosphohydrolase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source 2-Piperidinone in Pseudomonas putida KT2440

For nitrogen source 2-Piperidinone across organisms