Experiment set27IT012 for Pseudomonas putida KT2440

Compare to:

Valerolactam nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -6.6 -15.4 Ketol-acid reductoisomerase compare
PP_1079 -6.6 -9.0 Ornithine carbamoyltransferase compare
PP_3511 -6.5 -10.9 Branched-chain-amino-acid aminotransferase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1985 -6.5 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_5185 -6.4 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -6.4 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -6.3 -10.5 3-isopropylmalate dehydrogenase compare
PP_4890 -6.3 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4724 -6.2 -7.4 Carbamoyl-phosphate synthase small chain compare
PP_0420 -6.2 -14.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0290 -6.1 -10.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -6.0 -14.0 Transaldolase compare
PP_0184 -6.0 -4.1 Argininosuccinate lyase compare
PP_0082 -6.0 -7.1 tryptophan synthase alpha chain compare
PP_4723 -6.0 -13.9 Carbamoyl-phosphate synthase large chain compare
PP_5289 -5.9 -5.7 Acetylglutamate kinase compare
PP_5097 -5.8 -17.4 homoserine O-acetyltransferase compare
PP_0966 -5.7 -15.6 Histidinol dehydrogenase compare
PP_5098 -5.7 -10.9 methionine biosynthesis protein MetW compare
PP_0967 -5.7 -13.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -5.6 -18.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -5.4 -14.0 Argininosuccinate synthase compare
PP_0083 -5.4 -8.2 tryptophan synthase beta chain compare
PP_1995 -5.4 -13.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -5.4 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -5.4 -6.9 Indole-3-glycerol phosphate synthase compare
PP_0417 -5.3 -22.8 Anthranilate synthase component 1 compare
PP_2371 -5.1 -9.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5048 -4.9 -6.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4909 -4.9 -12.2 phosphoserine phosphatase compare
PP_5014 -4.8 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -4.8 -13.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0787 -4.7 -5.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5015 -4.6 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0289 -4.6 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -4.5 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2001 -4.4 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_5047 -4.4 -9.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0691 -4.4 -5.2 Glutamate 5-kinase compare
PP_1231 -4.2 -9.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -4.1 -2.8 pantothenate synthetase compare
PP_3515 -3.9 -11.9 5-oxoprolinase A compare
PP_3516 -3.9 -8.3 Transcriptional regulator, AraC family compare
PP_5128 -3.9 -6.8 Dihydroxy-acid dehydratase compare
PP_0421 -3.9 -8.9 Anthranilate phosphoribosyltransferase compare
PP_1589 -3.8 -12.5 uridylyltransferase compare
PP_2328 -3.8 -9.0 Phosphoadenosine phosphosulfate reductase compare
PP_3514 -3.8 -11.0 5-oxoprolinase B compare
PP_0214 -3.7 -8.6 4-aminobutyrate aminotransferase compare
PP_4696 -3.5 -8.1 Nitrogen regulation protein NR(I) compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_5155 -3.4 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2088 -3.3 -7.4 RNA polymerase sigma factor SigX compare
PP_1025 -3.2 -9.2 2-isopropylmalate synthase compare
PP_2370 -3.1 -4.5 conserved protein of unknown function compare
PP_2327 -2.9 -10.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4058 -2.9 -13.5 1,4-alpha-glucan branching enzyme compare
PP_5328 -2.8 -3.7 putative phosphate transport system permease protein compare
PP_4999 -2.7 -2.6 dihydroorotase-like protein compare
PP_1912 -2.5 -6.2 Phosphate acyltransferase compare
PP_4701 -2.3 -2.2 glucose-6-phosphate isomerase compare
PP_1664 -2.3 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_5347 -2.3 -10.1 pyruvate carboxylase subunit A compare
PP_5346 -2.2 -9.9 pyruvate carboxylase subunit B compare
PP_4874 -2.1 -2.2 50S ribosomal protein L9 compare
PP_1215 -2.1 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1110 -2.0 -5.2 serine acetyltransferase compare
PP_4693 -2.0 -4.7 RNA polymerase-binding transcription factor DksA compare
PP_0213 -1.9 -4.5 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_1366 -1.9 -2.5 Transcriptional regulator MvaT, P16 subunit compare
PP_4964 -1.8 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_3790 -1.8 -10.4 diaminopimelate epimerase compare
PP_5303 -1.8 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5227 -1.7 -8.1 diaminopimelate decarboxylase compare
PP_4699 -1.7 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1142 -1.6 -2.3 conserved protein of unknown function compare
PP_1217 -1.5 -4.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1468 -1.5 -3.7 Tyrosine recombinase XerD compare
PP_0291 -1.4 -1.5 conserved protein of unknown function compare
PP_4004 -1.4 -3.7 DNA translocase FtsK compare
PP_1654 -1.4 -3.4 cysteine synthase B compare
PP_3776 -1.4 -9.4 putative permease (RarD protein) compare
PP_1826 -1.3 -3.9 Hydrolase, isochorismatase family compare
PP_5348 -1.3 -7.4 Transcriptional regulator, LysR family compare
PP_4364 -1.3 -4.8 putative Anti-sigma F factor antagonist compare
PP_3105 -1.3 -3.7 conserved membrane protein of unknown function compare
PP_3415 -1.2 -5.6 Transcriptional regulator, LacI family compare
PP_0888 -1.2 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1233 -1.2 -5.0 sulfurtransferase compare
PP_4695 -1.2 -8.1 Sensory box histidine kinase compare
PP_1679 -1.2 -3.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1656 -1.2 -5.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_1216 -1.2 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3505 -1.2 -2.8 conserved protein of unknown function compare
PP_1109 -1.1 -8.0 Transcriptional regulator, GntR family compare
PP_2910 -1.1 -6.6 L-2-hydroxyglutarate oxidase compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4122 -1.1 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1111 -1.1 -5.6 putative Synthetase compare
PP_1055 -1.1 -1.5 Type II secretion pathway protein GspN compare
PP_5230 -1.1 -3.3 Tyrosine recombinase XerC compare
PP_1783 -1.1 -1.5 dTDP-glucose pyrophosphorylase compare
PP_4828 -1.0 -1.7 Precorrin-8X methylmutase compare
PP_4782 -1.0 -5.3 Phosphomethylpyrimidine kinase compare
PP_0735 -1.0 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_1293 -1.0 -1.1 molybdopterin synthase small subunit compare
PP_0362 -1.0 -6.8 Biotin synthase compare
PP_1713 -1.0 -2.1 Transcriptional regulator PcaQ compare
PP_1734 -0.9 -1.9 Probable septum site-determining protein MinC compare
PP_1268 -0.9 -3.6 putative HtrA suppressor protein sohA compare
PP_1128 -0.9 -3.0 OmpA family protein compare
PP_0393 -0.9 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4379 -0.9 -4.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4060 -0.9 -6.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4942 -0.9 -1.9 conserved protein of unknown function compare
PP_0261 -0.9 -5.2 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3755 -0.9 -4.4 3-hydroxybutyryl-CoA dehydrogenase compare
PP_4387 -0.9 -2.9 conserved exported protein of unknown function compare
PP_4098 -0.8 -1.2 UvrABC system protein C compare
PP_5114 -0.8 -1.3 putative adenine methyltransferase compare
PP_1198 -0.8 -1.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1426 -0.8 -6.3 L-aspartate oxidase compare
PP_3312 -0.8 -2.3 putative Heat shock protein compare
PP_4943 -0.8 -1.8 putative Glycosyl transferase compare
PP_5093 -0.8 -1.7 twitching motility protein compare
PP_4480 -0.8 -5.2 arginine N-succinyltransferase, subunit alpha compare
PP_4997 -0.8 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5217 -0.8 -6.3 Polyphosphate kinase compare
PP_5652 -0.7 -1.6 conserved protein of unknown function, phage origin compare
PP_5338 -0.7 -1.4 aspartate ammonia-lyase compare
PP_2217 -0.7 -1.8 enoyl-CoA hydratase compare
PP_3376 -0.7 -4.0 putative phosphonate dehydrogenase compare
PP_5104 -0.7 -4.3 thiazole synthase compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2302 -0.7 -3.7 DNA-binding, ATP-dependent protease compare
PP_5253 -0.7 -2.5 Arylesterase compare
PP_3519 -0.7 -1.2 putative Lipoprotein compare
PP_0833 -0.7 -1.6 queuine tRNA-ribosyltransferase compare
PP_3398 -0.7 -2.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5661 -0.7 -3.3 putative lipoprotein compare
PP_4922 -0.7 -4.8 Phosphomethylpyrimidine synthase compare
PP_2920 -0.6 -3.8 putative nitrogen-containing compound degradation enzyme compare
PP_0879 -0.6 -3.1 dipeptide ABC transporter - putative ATP binding subunit compare
PP_2846 -0.6 -1.8 urease accessory protein compare
PP_2929 -0.6 -3.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4546 -0.6 -2.2 ATP-dependent helicase HrpA compare
PP_0339 -0.6 -2.4 Pyruvate dehydrogenase E1 component compare
PP_5083 -0.6 -1.7 putative Type IV pili biogenesis protein PilM compare
PP_1362 -0.6 -2.2 pyruvate kinase II compare
PP_5076 -0.6 -5.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_1304 -0.6 -4.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4121 -0.6 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_3892 -0.6 -1.5 conserved protein of unknown function compare
PP_0127 -0.6 -3.4 Thiol:disulfide interchange protein compare
PP_5216 -0.6 -1.8 exopolyphosphatase compare
PP_4124 -0.6 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_3064 -0.6 -2.1 Phage tail protein compare
PP_5507 -0.6 -1.4 protein of unknown function compare
PP_5146 -0.6 -3.8 RNA pyrophosphohydrolase compare
PP_4528 -0.6 -1.3 conserved protein of unknown function compare
PP_3789 -0.6 -3.1 putative Efflux transporter compare
PP_0878 -0.6 -3.0 dipeptide ABC transporter, binding subunit compare
PP_3902 -0.6 -2.0 conserved protein of unknown function compare
PP_1629 -0.6 -2.2 Protein RecA compare
PP_4792 -0.6 -2.2 conserved exported protein of unknown function compare
PP_0413 -0.6 -4.7 Polyamine ABC transporter, permease protein compare
PP_1096 -0.6 -2.1 putative electron transport complex protein compare
PP_0164 -0.6 -3.0 conserved protein of unknown function compare
PP_5094 -0.5 -2.8 putative enzyme with PLP binding domain compare
PP_3248 -0.5 -1.0 Dyp-type peroxidase family protein compare
PP_3346 -0.5 -2.4 Nickel transporter ATP-binding protein compare
PP_3392 -0.5 -1.7 conserved protein of unknown function compare
PP_0725 -0.5 -2.3 conserved hypothetical TPR repeat protein compare
PP_5619 -0.5 -1.9 protein of unknown function compare
PP_5583 -0.5 -1.7 conserved protein of unknown function compare
PP_1800 -0.5 -4.2 Oxidoreductase Rmd compare
PP_5248 -0.5 -1.4 putative hydrolase compare
PP_2189 -0.5 -1.8 conserved protein of unknown function compare
PP_1678 -0.5 -1.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4199 -0.5 -0.8 putative Lipoprotein compare
PP_3232 -0.5 -2.7 Acetyltransferase, GNAT family compare
PP_0880 -0.5 -2.4 dipeptide ABC transporter - putative membrane subunit compare
PP_2681 -0.5 -1.4 coenzyme PQQ synthesis protein D compare
PP_0593 -0.5 -0.8 putative ribosome-binding factor compare
PP_4824 -0.5 -2.6 Sensor histidine kinase/response regulator compare
PP_3754 -0.5 -2.2 Beta-ketothiolase BktB compare
PP_4129 -0.5 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5528 -0.5 -1.3 conserved protein of unknown function compare
PP_5075 -0.5 -3.9 glutamate synthase (NADPH) beta subunit compare
PP_0484 -0.5 -3.2 transporter of an unknown substrate compare
PP_5475 -0.5 -0.6 conserved protein of unknown function compare
PP_0185 -0.5 -3.0 Positive alginate biosynthesis regulatory protein compare
PP_2243 -0.5 -2.5 conserved protein of unknown function compare
PP_5327 -0.5 -1.1 putative phosphate ABC transporter, permease subunit compare
PP_4913 -0.5 -2.0 conserved protein of unknown function compare
PP_t29 -0.5 -0.6 tRNA-Ala compare
PP_4131 -0.5 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_4826 -0.5 -2.6 Precorrin-3B C17-methyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source 2-Piperidinone in Pseudomonas putida KT2440

For nitrogen source 2-Piperidinone across organisms