Experiment set27IT011 for Pseudomonas putida KT2440

Compare to:

Sodium nitrite nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0420 -7.4 -10.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2433 -7.1 -4.9 conserved protein of unknown function compare
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1995 -7.0 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5048 -6.8 -8.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2168 -6.8 -11.4 Transaldolase compare
PP_1985 -6.5 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_0967 -6.4 -13.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -6.3 -4.3 tryptophan synthase beta chain compare
PP_5075 -6.1 -15.9 glutamate synthase (NADPH) beta subunit compare
PP_1079 -6.1 -9.3 Ornithine carbamoyltransferase compare
PP_0966 -6.1 -15.2 Histidinol dehydrogenase compare
PP_0422 -6.0 -8.2 Indole-3-glycerol phosphate synthase compare
PP_4909 -6.0 -10.0 phosphoserine phosphatase compare
PP_1988 -5.9 -12.1 3-isopropylmalate dehydrogenase compare
PP_0290 -5.7 -11.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -5.7 -7.8 tryptophan synthase alpha chain compare
PP_0417 -5.6 -22.0 Anthranilate synthase component 1 compare
PP_4678 -5.6 -19.3 Ketol-acid reductoisomerase compare
PP_4680 -5.6 -18.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5076 -5.5 -25.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_0184 -5.4 -7.4 Argininosuccinate lyase compare
PP_0292 -5.4 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4723 -5.3 -16.6 Carbamoyl-phosphate synthase large chain compare
PP_5185 -5.3 -8.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4724 -5.2 -9.3 Carbamoyl-phosphate synthase small chain compare
PP_3511 -5.1 -9.2 Branched-chain-amino-acid aminotransferase compare
PP_1231 -5.1 -7.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5014 -5.1 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -5.1 -6.0 Nitrogen regulation protein NR(I) compare
PP_0289 -4.9 -9.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -4.9 -7.4 Acetylglutamate kinase compare
PP_4679 -4.8 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5047 -4.8 -7.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4364 -4.7 -8.5 putative Anti-sigma F factor antagonist compare
PP_1088 -4.7 -15.0 Argininosuccinate synthase compare
PP_5128 -4.5 -7.8 Dihydroxy-acid dehydratase compare
PP_1986 -4.5 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_2371 -4.5 -10.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0787 -4.5 -7.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0421 -4.4 -7.4 Anthranilate phosphoribosyltransferase compare
PP_5098 -4.4 -12.3 methionine biosynthesis protein MetW compare
PP_5015 -4.4 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4890 -4.3 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -4.2 -14.3 pyruvate carboxylase subunit A compare
PP_2001 -4.0 -12.1 O-succinylhomoserine sulfhydrylase compare
PP_5346 -4.0 -11.4 pyruvate carboxylase subunit B compare
PP_0965 -4.0 -12.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1362 -4.0 -7.5 pyruvate kinase II compare
PP_2327 -3.6 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -3.5 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0691 -3.5 -5.3 Glutamate 5-kinase compare
PP_0339 -3.5 -3.4 Pyruvate dehydrogenase E1 component compare
PP_1589 -3.5 -11.9 uridylyltransferase compare
PP_2328 -3.5 -8.8 Phosphoadenosine phosphosulfate reductase compare
PP_5097 -3.4 -15.8 homoserine O-acetyltransferase compare
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_3999 -3.4 -9.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1705 -3.1 -14.6 nitrite reductase [NAD(P)H] large subunit conserved
PP_2370 -3.1 -3.6 conserved protein of unknown function compare
PP_5348 -3.0 -10.4 Transcriptional regulator, LysR family compare
PP_1022 -2.9 -6.0 glucose 6-phosphate-1-dehydrogenase compare
PP_2349 -2.9 -8.9 nitrite transporter, HPP family (from data) compare
PP_1233 -2.6 -6.7 sulfurtransferase compare
PP_3376 -2.6 -8.0 putative phosphonate dehydrogenase compare
PP_1706 -2.6 -6.1 Nitrite reductase compare
PP_2093 -2.5 -12.2 NasT conserved
PP_3790 -2.5 -10.1 diaminopimelate epimerase compare
PP_5095 -2.5 -2.3 pyrroline-5-carboxylate reductase compare
PP_5350 -2.4 -5.5 Transcriptional regulator, RpiR family compare
PP_0377 -2.4 -2.5 coenzyme PQQ synthesis protein D compare
PP_4782 -2.4 -7.1 Phosphomethylpyrimidine kinase compare
PP_0888 -2.4 -2.8 Photosynthetic apparatus regulatory protein RegA compare
PP_5104 -2.4 -10.5 thiazole synthase compare
PP_5303 -2.4 -6.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4700 -2.4 -4.5 pantothenate synthetase compare
PP_1025 -2.3 -7.1 2-isopropylmalate synthase compare
PP_2088 -2.2 -6.2 RNA polymerase sigma factor SigX compare
PP_0735 -2.2 -3.8 molybdopterin-synthase adenylyltransferase compare
PP_4358 -2.1 -9.0 flagellar synthesis, switching and energizing component compare
PP_4120 -2.1 -5.3 NADH-quinone oxidoreductase subunit B compare
PP_4004 -2.0 -4.9 DNA translocase FtsK compare
PP_0164 -2.0 -5.9 conserved protein of unknown function compare
PP_0362 -2.0 -12.4 Biotin synthase compare
PP_0914 -2.0 -13.2 GGDEF domain protein compare
PP_4368 -1.9 -8.2 flagellar motor switch protein compare
PP_2302 -1.9 -6.8 DNA-binding, ATP-dependent protease compare
PP_2350 -1.9 -7.2 LysR family transcriptional regulator conserved
PP_0378 -1.9 -10.2 Pyrroloquinoline-quinone synthase compare
PP_3105 -1.9 -4.0 conserved membrane protein of unknown function compare
PP_5227 -1.9 -7.2 diaminopimelate decarboxylase compare
PP_4129 -1.8 -4.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1366 -1.8 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_4532 -1.8 -3.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4124 -1.8 -5.8 NADH-quinone oxidoreductase subunit G compare
PP_1493 -1.7 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4922 -1.7 -12.1 Phosphomethylpyrimidine synthase compare
PP_2388 -1.7 -6.6 Transporter, LysE family compare
PP_0381 -1.6 -5.8 Coenzyme PQQ synthesis protein F compare
PP_1444 -1.6 -11.2 quinoprotein glucose dehydrogenase compare
PP_4695 -1.6 -8.4 Sensory box histidine kinase compare
PP_4369 -1.6 -9.8 Flagellar M-ring protein compare
PP_4943 -1.6 -2.7 putative Glycosyl transferase compare
PP_4126 -1.6 -2.7 NADH-quinone oxidoreductase subunit I compare
PP_3649 -1.6 -3.4 Transcriptional regulator, GntR family compare
PP_0949 -1.6 -5.9 putative ATP-binding protein UPF0042 compare
PP_4693 -1.5 -4.1 RNA polymerase-binding transcription factor DksA compare
PP_3377 -1.5 -11.7 2-ketogluconate transporter, putative compare
PP_1348 -1.5 -5.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1426 -1.5 -10.9 L-aspartate oxidase compare
PP_4131 -1.5 -6.2 NADH-quinone oxidoreductase subunit N compare
PP_4122 -1.5 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0376 -1.4 -8.4 Coenzyme PQQ synthesis protein E compare
PP_2414 -1.4 -1.3 conserved exported protein of unknown function compare
PP_5216 -1.4 -2.6 exopolyphosphatase compare
PP_4828 -1.4 -2.3 Precorrin-8X methylmutase compare
PP_1216 -1.4 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4480 -1.4 -9.0 arginine N-succinyltransferase, subunit alpha compare
PP_3506 -1.4 -4.7 Magnesium chelatase, subunit ChII compare
PP_4993 -1.4 -3.8 Glutathione synthetase compare
PP_1553 -1.4 -2.4 conserved protein of unknown function compare
PP_4121 -1.3 -4.8 NADH-quinone oxidoreductase subunit C/D compare
PP_0379 -1.3 -6.1 Coenzyme PQQ synthesis protein B compare
PP_0291 -1.3 -1.8 conserved protein of unknown function compare
PP_1672 -1.3 -4.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1994 -1.3 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_0127 -1.3 -6.4 Thiol:disulfide interchange protein compare
PP_1428 -1.3 -2.1 Sigma factor AlgU negative regulatory protein compare
PP_1217 -1.3 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4359 -1.2 -5.3 Flagellar protein FliL compare
PP_4829 -1.2 -3.7 putative precorrin-3B synthase compare
PP_4895 -1.2 -2.8 tRNA dimethylallyltransferase compare
PP_5230 -1.2 -4.0 Tyrosine recombinase XerC compare
PP_1468 -1.2 -2.4 Tyrosine recombinase XerD compare
PP_1826 -1.2 -2.8 Hydrolase, isochorismatase family compare
PP_4699 -1.2 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0365 -1.1 -7.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1677 -1.1 -4.9 Adenosyl-cobyric acid synthase compare
PP_2324 -1.1 -5.5 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2390 -1.1 -6.5 Transcriptional regulator, LysR family compare
PP_2348 -1.1 -5.2 Sensor histidine kinase compare
PP_3378 -1.1 -3.2 putative 2-ketogluconokinase compare
PP_0406 -1.1 -4.2 Nucleotidyltransferase family protein compare
PP_0435 -1.1 -9.0 Peptidase, M23/M37 family compare
PP_1009 -1.1 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
PP_2402 -1.1 -2.4 putative Sensor histidine kinase compare
PP_3417 -1.1 -4.5 D-gluconate transporter compare
PP_0878 -1.1 -4.7 dipeptide ABC transporter, binding subunit compare
PP_1676 -1.1 -5.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0363 -1.0 -7.9 8-amino-7-oxononanoate synthase compare
PP_4832 -1.0 -4.6 Precorrin-6x reductase compare
PP_4799 -1.0 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2345 -1.0 -1.9 conserved exported protein of unknown function compare
PP_4060 -1.0 -8.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5338 -1.0 -1.7 aspartate ammonia-lyase compare
PP_1681 -1.0 -6.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1673 -1.0 -4.5 cobyrinate a,c-diamide synthase compare
PP_3903 -1.0 -2.5 conserved protein of unknown function compare
PP_0380 -1.0 -3.3 Coenzyme PQQ synthesis protein A compare
PP_0880 -1.0 -4.3 dipeptide ABC transporter - putative membrane subunit compare
PP_4984 -1.0 -7.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2378 -1.0 -1.9 Fe/S biogenesis protein NfuA compare
PP_4880 -1.0 -2.8 exoribonuclease R compare
PP_1303 -1.0 -5.6 Sulfate adenylyltransferase subunit 2 compare
PP_4008 -1.0 -5.9 ATP-dependent serine protease compare
PP_3892 -1.0 -2.3 conserved protein of unknown function compare
PP_3380 -0.9 -3.6 2-ketogluconate utilization repressor compare
PP_4344 -0.9 -6.5 flagellar export pore protein compare
PP_3776 -0.9 -5.6 putative permease (RarD protein) compare
PP_3924 -0.9 -2.9 conserved protein of unknown function compare
PP_1355 -0.9 -7.9 Muropeptide permease AmpG compare
PP_5233 -0.9 -6.1 ammonium transporter AmtB compare
PP_4058 -0.9 -6.3 1,4-alpha-glucan branching enzyme compare
PP_0434 -0.9 -4.7 Anhydro-N-acetylmuramic acid kinase compare
PP_1654 -0.9 -3.4 cysteine synthase B compare
PP_3507 -0.9 -6.8 Aerobic cobaltochelatase subunit CobN compare
PP_3508 -0.9 -3.3 Protein CobW compare
PP_0630 -0.9 -1.6 DNA gyrase inhibitor YacG compare
PP_0364 -0.9 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_4381 -0.9 -7.5 Flagellar hook-associated protein FlgK compare
PP_4827 -0.9 -6.2 Precorrin-2 C(20)-methyltransferase compare
PP_2136 -0.9 -3.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1304 -0.9 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2217 -0.9 -3.2 enoyl-CoA hydratase compare
PP_4130 -0.8 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1528 -0.8 -1.9 conserved protein of unknown function compare
PP_4826 -0.8 -3.3 Precorrin-3B C17-methyltransferase compare
PP_0366 -0.8 -5.1 dethiobiotin synthetase compare
PP_4726 -0.8 -1.5 Chaperone protein DnaJ compare
PP_1679 -0.8 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4684 -0.8 -4.9 conserved protein of unknown function with kinase-like domain compare
PP_4370 -0.8 -2.5 Flagellar hook-basal body complex protein FliE compare
PP_1675 -0.8 -5.0 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0879 -0.8 -4.1 dipeptide ABC transporter - putative ATP binding subunit compare
PP_2883 -0.8 -2.1 conserved protein of unknown function compare
PP_5331 -0.8 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_1063 -0.8 -5.7 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_1198 -0.8 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4380 -0.8 -6.6 Flagellar hook-associated protein FlgL compare
PP_2322 -0.8 -4.2 Major outer membrane lipoprotein compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas putida KT2440

For nitrogen source Sodium nitrite across organisms