Experiment set27IT009 for Pseudomonas putida KT2440

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -6.5 -15.8 Ketol-acid reductoisomerase compare
PP_4679 -6.4 -7.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -6.4 -8.8 Ornithine carbamoyltransferase compare
PP_0083 -6.2 -4.3 tryptophan synthase beta chain compare
PP_4724 -6.2 -7.4 Carbamoyl-phosphate synthase small chain compare
PP_1985 -6.2 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_0082 -6.2 -6.0 tryptophan synthase alpha chain compare
PP_4890 -6.1 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_4680 -6.1 -17.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -6.0 -14.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0184 -6.0 -4.1 Argininosuccinate lyase compare
PP_5075 -6.0 -15.0 glutamate synthase (NADPH) beta subunit compare
PP_1088 -6.0 -11.5 Argininosuccinate synthase compare
PP_4723 -5.8 -14.1 Carbamoyl-phosphate synthase large chain compare
PP_1986 -5.7 -5.5 3-isopropylmalate dehydratase small subunit compare
PP_0966 -5.6 -15.8 Histidinol dehydrogenase compare
PP_0290 -5.4 -10.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -5.3 -3.7 Glutamate 5-kinase compare
PP_2371 -5.3 -8.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5076 -5.2 -22.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_1995 -5.2 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1988 -5.2 -10.3 3-isopropylmalate dehydrogenase compare
PP_4909 -5.2 -10.8 phosphoserine phosphatase compare
PP_5128 -5.1 -9.1 Dihydroxy-acid dehydratase compare
PP_5289 -5.1 -6.9 Acetylglutamate kinase compare
PP_5097 -5.0 -17.4 homoserine O-acetyltransferase compare
PP_0292 -5.0 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3511 -4.9 -11.5 Branched-chain-amino-acid aminotransferase compare
PP_0421 -4.9 -8.6 Anthranilate phosphoribosyltransferase compare
PP_0289 -4.9 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0420 -4.7 -12.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5348 -4.7 -12.6 Transcriptional regulator, LysR family compare
PP_0422 -4.6 -6.6 Indole-3-glycerol phosphate synthase compare
PP_0417 -4.6 -21.0 Anthranilate synthase component 1 compare
PP_5185 -4.6 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3999 -4.5 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -4.5 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5346 -4.4 -12.8 pyruvate carboxylase subunit B compare
PP_0787 -4.4 -6.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5303 -4.4 -7.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2001 -4.3 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_5347 -4.3 -15.1 pyruvate carboxylase subunit A compare
PP_1231 -4.2 -7.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4696 -4.1 -7.9 Nitrogen regulation protein NR(I) compare
PP_2168 -4.1 -14.8 Transaldolase compare
PP_2370 -3.9 -4.5 conserved protein of unknown function compare
PP_0965 -3.8 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1022 -3.8 -7.2 glucose 6-phosphate-1-dehydrogenase compare
PP_5014 -3.8 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0339 -3.7 -2.6 Pyruvate dehydrogenase E1 component compare
PP_5098 -3.5 -9.3 methionine biosynthesis protein MetW compare
PP_5015 -3.5 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1025 -3.4 -11.1 2-isopropylmalate synthase compare
PP_4364 -3.2 -9.0 putative Anti-sigma F factor antagonist compare
PP_2327 -3.0 -7.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1110 -2.8 -7.1 serine acetyltransferase compare
PP_0362 -2.8 -14.4 Biotin synthase compare
PP_4999 -2.7 -2.6 dihydroorotase-like protein compare
PP_4700 -2.7 -4.4 pantothenate synthetase compare
PP_2388 -2.6 -6.5 Transporter, LysE family compare
PP_2328 -2.5 -8.4 Phosphoadenosine phosphosulfate reductase compare
PP_1664 -2.4 -5.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_3790 -2.3 -9.8 diaminopimelate epimerase compare
PP_0735 -2.3 -3.7 molybdopterin-synthase adenylyltransferase compare
PP_1362 -2.1 -5.7 pyruvate kinase II compare
PP_4004 -2.0 -4.6 DNA translocase FtsK compare
PP_5104 -2.0 -8.6 thiazole synthase compare
PP_1912 -2.0 -7.3 Phosphate acyltransferase compare
PP_0291 -2.0 -1.9 conserved protein of unknown function compare
PP_4964 -2.0 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_4922 -2.0 -12.6 Phosphomethylpyrimidine synthase compare
PP_4984 -1.9 -11.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4693 -1.9 -5.1 RNA polymerase-binding transcription factor DksA compare
PP_4782 -1.9 -6.7 Phosphomethylpyrimidine kinase compare
PP_5048 -1.8 -7.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5350 -1.7 -5.4 Transcriptional regulator, RpiR family compare
PP_1109 -1.7 -10.1 Transcriptional regulator, GntR family compare
PP_0164 -1.7 -6.9 conserved protein of unknown function compare
PP_1233 -1.7 -6.1 sulfurtransferase compare
PP_0364 -1.7 -9.9 pimeloyl-[acp] methyl ester esterase compare
PP_0363 -1.7 -10.7 8-amino-7-oxononanoate synthase compare
PP_1217 -1.6 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0365 -1.6 -9.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1426 -1.6 -10.8 L-aspartate oxidase compare
PP_3946 -1.6 -2.5 HTH-type transcriptional repressor NicR compare
PP_2390 -1.6 -7.6 Transcriptional regulator, LysR family compare
PP_4910 -1.6 -3.1 conserved protein of unknown function compare
PP_0127 -1.5 -6.1 Thiol:disulfide interchange protein compare
PP_5095 -1.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_5227 -1.5 -7.3 diaminopimelate decarboxylase compare
PP_5331 -1.4 -3.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4122 -1.4 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0366 -1.4 -4.8 dethiobiotin synthetase compare
PP_1111 -1.3 -5.1 putative Synthetase compare
PP_0393 -1.3 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5230 -1.3 -4.0 Tyrosine recombinase XerC compare
PP_3519 -1.2 -1.8 putative Lipoprotein compare
PP_2402 -1.2 -2.6 putative Sensor histidine kinase compare
PP_1348 -1.2 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2414 -1.2 -1.3 conserved exported protein of unknown function compare
PP_1589 -1.2 -6.5 uridylyltransferase compare
PP_3505 -1.2 -2.2 conserved protein of unknown function compare
PP_4124 -1.2 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0846 -1.1 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_3105 -1.1 -3.3 conserved membrane protein of unknown function compare
PP_4701 -1.1 -1.5 glucose-6-phosphate isomerase compare
PP_0809 -1.1 -7.2 disulfide bond formation protein B compare
PP_3248 -1.0 -1.7 Dyp-type peroxidase family protein compare
PP_4726 -1.0 -2.5 Chaperone protein DnaJ compare
PP_1654 -1.0 -3.6 cysteine synthase B compare
PP_1366 -1.0 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_0261 -1.0 -5.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4532 -1.0 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1326 -1.0 -3.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5028 -0.9 -3.0 proline iminopeptidase compare
PP_4504 -0.9 -2.2 conserved exported protein of unknown function compare
PP_5090 -0.9 -1.8 putative cell division protein compare
PP_5546 -0.9 -1.3 conserved protein of unknown function compare
PP_3417 -0.9 -3.8 D-gluconate transporter compare
PP_1826 -0.9 -1.6 Hydrolase, isochorismatase family compare
PP_2348 -0.9 -3.9 Sensor histidine kinase compare
PP_3376 -0.9 -4.1 putative phosphonate dehydrogenase compare
PP_4684 -0.9 -5.2 conserved protein of unknown function with kinase-like domain compare
PP_0630 -0.8 -1.4 DNA gyrase inhibitor YacG compare
PP_1468 -0.8 -2.5 Tyrosine recombinase XerD compare
PP_2302 -0.8 -4.4 DNA-binding, ATP-dependent protease compare
PP_2345 -0.8 -2.5 conserved exported protein of unknown function compare
PP_5628 -0.8 -1.3 conserved protein of unknown function compare
PP_4695 -0.8 -5.4 Sensory box histidine kinase compare
PP_1097 -0.8 -1.7 Methionine--tRNA ligase compare
PP_1304 -0.8 -5.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4804 -0.8 -1.7 RlpA-like lipoprotein compare
PP_1216 -0.8 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4098 -0.8 -1.4 UvrABC system protein C compare
PP_1733 -0.8 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_5047 -0.8 -2.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3506 -0.8 -2.9 Magnesium chelatase, subunit ChII compare
PP_4847 -0.8 -2.8 chaperone modulatory of CbpA co-chaperone protein compare
PP_5706 -0.7 -1.6 Sec translocation complex - SecG subunit compare
PP_3484 -0.7 -2.3 Response regulator receiver protein compare
PP_4828 -0.7 -1.5 Precorrin-8X methylmutase compare
PP_5216 -0.7 -1.4 exopolyphosphatase compare
PP_5453 -0.7 -1.5 conserved protein of unknown function compare
PP_0963 -0.7 -1.6 putative BolA family protein compare
PP_0381 -0.7 -4.2 Coenzyme PQQ synthesis protein F compare
PP_5066 -0.7 -3.7 K(+)/H(+) antiporter NhaP2 compare
PP_4223 -0.7 -1.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1214 -0.7 -2.0 putative transcriptional regulatory protein compare
PP_4424 -0.7 -1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1675 -0.7 -4.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3789 -0.7 -3.3 putative Efflux transporter compare
PP_4943 -0.7 -1.5 putative Glycosyl transferase compare
PP_1198 -0.7 -1.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3507 -0.7 -5.2 Aerobic cobaltochelatase subunit CobN compare
PP_0378 -0.7 -4.2 Pyrroloquinoline-quinone synthase compare
PP_4699 -0.7 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4480 -0.7 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_3649 -0.7 -2.0 Transcriptional regulator, GntR family compare
PP_1681 -0.7 -4.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3508 -0.7 -2.9 Protein CobW compare
PP_1672 -0.7 -2.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3443 -0.6 -4.5 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0376 -0.6 -4.6 Coenzyme PQQ synthesis protein E compare
PP_0758 -0.6 -2.7 conserved protein of unknown function compare
PP_1404 -0.6 -2.3 conserved protein of unknown function compare
PP_1493 -0.6 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0379 -0.6 -4.1 Coenzyme PQQ synthesis protein B compare
PP_2081 -0.6 -3.5 putative phosphoenolpyruvate synthase regulatory protein compare
PP_1553 -0.6 -1.5 conserved protein of unknown function compare
PP_5661 -0.6 -3.1 putative lipoprotein compare
PP_1011 -0.6 -4.8 glucokinase compare
PP_3776 -0.6 -3.8 putative permease (RarD protein) compare
PP_5507 -0.6 -2.1 protein of unknown function compare
PP_2442 -0.6 -1.6 conserved protein of unknown function, DUF480 family compare
PP_0978 -0.6 -1.5 conserved protein of unknown function compare
PP_1410 -0.6 -1.2 conserved protein of unknown function compare
PP_4993 -0.6 -2.0 Glutathione synthetase compare
PP_2880 -0.6 -1.3 Transcriptional regulator, TetR family compare
PP_0435 -0.6 -5.1 Peptidase, M23/M37 family compare
PP_3315 -0.6 -2.8 conserved membrane protein of unknown function compare
PP_4848 -0.6 -2.0 Curved DNA-binding protein compare
PP_2375 -0.6 -4.9 cobalamin-dependent methionine synthase compare
PP_4835 -0.6 -2.1 conserved exported protein of unknown function compare
PP_4555 -0.6 -2.2 conserved protein of unknown function compare
PP_4829 -0.6 -1.7 putative precorrin-3B synthase compare
PP_5352 -0.6 -4.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5035 -0.6 -3.4 Histidine utilization repressor compare
PP_4482 -0.6 -2.4 Transcriptional regulator, AraC family compare
PP_1009 -0.6 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PP_3603 -0.6 -3.4 Transcriptional regulator, GntR family compare
PP_4058 -0.6 -4.0 1,4-alpha-glucan branching enzyme compare
PP_2929 -0.6 -3.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0065 -0.6 -1.4 NAD-binding component of TrK potassium transporter compare
PP_2337 -0.5 -1.6 aconitate isomerase compare
PP_2389 -0.5 -1.6 conserved protein of unknown function compare
PP_4018 -0.5 -2.2 Acetyltransferase, GNAT family compare
PP_5528 -0.5 -1.4 conserved protein of unknown function compare
PP_3377 -0.5 -4.5 2-ketogluconate transporter, putative compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Urea across organisms