Experiment set27IT007 for Pseudomonas putida KT2440

Compare to:

6-aminocaproic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4364 -3.7 -5.6 putative Anti-sigma F factor antagonist compare
PP_1328 -3.6 -4.2 Protein MraZ compare
PP_5048 -3.5 -6.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0293 -3.3 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0083 -2.4 -6.2 tryptophan synthase beta chain compare
PP_0082 -2.3 -6.0 tryptophan synthase alpha chain compare
PP_0422 -2.2 -6.6 Indole-3-glycerol phosphate synthase compare
PP_0290 -2.2 -7.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1589 -2.1 -8.1 uridylyltransferase compare
PP_2088 -1.9 -3.8 RNA polymerase sigma factor SigX compare
PP_3821 -1.9 -8.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5075 -1.9 -11.7 glutamate synthase (NADPH) beta subunit compare
PP_5076 -1.9 -10.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_4058 -1.9 -9.2 1,4-alpha-glucan branching enzyme compare
PP_4060 -1.8 -11.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1079 -1.8 -6.6 Ornithine carbamoyltransferase compare
PP_4680 -1.8 -12.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5047 -1.8 -5.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4678 -1.7 -10.8 Ketol-acid reductoisomerase compare
PP_1988 -1.7 -6.8 3-isopropylmalate dehydrogenase compare
PP_5289 -1.6 -4.4 Acetylglutamate kinase compare
PP_4340 -1.6 -4.4 response regulator for chemotactic signal transduction compare
PP_0292 -1.6 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2328 -1.6 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_5128 -1.6 -8.5 Dihydroxy-acid dehydratase compare
PP_4724 -1.6 -4.3 Carbamoyl-phosphate synthase small chain compare
PP_0417 -1.5 -10.9 Anthranilate synthase component 1 compare
PP_2168 -1.5 -8.3 Transaldolase compare
PP_0967 -1.5 -8.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2899 -1.5 -2.4 conserved exported protein of unknown function compare
PP_4004 -1.4 -3.0 DNA translocase FtsK compare
PP_0289 -1.4 -5.3 Imidazoleglycerol-phosphate dehydratase compare
PP_1216 -1.4 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1995 -1.4 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5179 -1.4 -6.7 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_0420 -1.4 -7.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5090 -1.4 -2.5 putative cell division protein compare
PP_1985 -1.4 -2.6 3-isopropylmalate dehydratase large subunit compare
PP_0421 -1.3 -5.3 Anthranilate phosphoribosyltransferase compare
PP_4143 -1.3 -2.7 conserved protein of unknown function compare
PP_0966 -1.3 -6.7 Histidinol dehydrogenase compare
PP_2302 -1.3 -5.1 DNA-binding, ATP-dependent protease compare
PP_5098 -1.3 -5.6 methionine biosynthesis protein MetW compare
PP_5114 -1.3 -1.2 putative adenine methyltransferase compare
PP_5177 -1.3 -7.0 spermidine/putrescine ABC transporter - permease subunit compare
PP_1493 -1.3 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1215 -1.3 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_2568 -1.3 -1.9 Ring-cleaving dioxygenase compare
PP_3511 -1.3 -4.6 Branched-chain-amino-acid aminotransferase compare
PP_5014 -1.3 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1088 -1.3 -7.3 Argininosuccinate synthase compare
PP_1198 -1.2 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4679 -1.2 -4.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4338 -1.2 -5.9 Chemotaxis histidine kinase CheA compare
PP_4909 -1.1 -4.5 phosphoserine phosphatase compare
PP_5097 -1.1 -6.8 homoserine O-acetyltransferase compare
PP_5178 -1.1 -7.0 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_2001 -1.1 -5.2 O-succinylhomoserine sulfhydrylase compare
PP_4943 -1.1 -1.8 putative Glycosyl transferase compare
PP_5181 -1.1 -7.6 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_4696 -1.1 -3.7 Nitrogen regulation protein NR(I) compare
PP_4811 -1.0 -3.0 Gamma-glutamyl phosphate reductase compare
PP_4504 -1.0 -2.2 conserved exported protein of unknown function compare
PP_4098 -1.0 -1.2 UvrABC system protein C compare
PP_4392 -1.0 -5.5 chemotaxis protein methyltransferase compare
PP_3318 -1.0 -2.1 conserved protein of unknown function compare
PP_2370 -1.0 -2.4 conserved protein of unknown function compare
PP_4999 -1.0 -1.1 dihydroorotase-like protein compare
PP_4723 -1.0 -6.0 Carbamoyl-phosphate synthase large chain compare
PP_0164 -1.0 -3.6 conserved protein of unknown function compare
PP_1986 -1.0 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_2433 -1.0 -2.3 conserved protein of unknown function compare
PP_5155 -1.0 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2307 -0.9 -2.2 conserved protein of unknown function compare
PP_4828 -0.9 -1.2 Precorrin-8X methylmutase compare
PP_4890 -0.9 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_2229 -0.9 -3.0 putative K(+)/H(+) antiporter subunit C compare
PP_5233 -0.9 -4.7 ammonium transporter AmtB compare
PP_0556 -0.9 -3.0 Acetoin catabolism protein compare
PP_5465 -0.9 -4.0 conserved protein of unknown function compare
PP_1468 -0.9 -1.5 Tyrosine recombinase XerD compare
PP_1025 -0.9 -5.5 2-isopropylmalate synthase compare
PP_5095 -0.8 -0.8 pyrroline-5-carboxylate reductase compare
PP_5202 -0.8 -2.1 putative cell division protein compare
PP_0965 -0.8 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -0.8 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0874 -0.8 -2.0 conserved protein of unknown function compare
PP_1860 -0.8 -3.7 Organic hydroperoxide resistance transcriptional regulator compare
PP_5017 -0.8 -1.3 Sec-independent protein translocase protein TatB compare
PP_5028 -0.8 -2.1 proline iminopeptidase compare
PP_0914 -0.8 -4.8 GGDEF domain protein compare
PP_4505 -0.8 -4.0 Sensor histidine kinase compare
PP_5182 -0.7 -3.6 polyamine:pyruvate transaminase compare
PP_3508 -0.7 -2.2 Protein CobW compare
PP_1654 -0.7 -2.2 cysteine synthase B compare
PP_t49 -0.7 -2.1 tRNA-Met compare
PP_3833 -0.7 -2.9 Response regulator compare
PP_5180 -0.7 -3.7 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_5191 -0.7 -1.9 conserved exported protein of unknown function compare
PP_1729 -0.7 -1.6 conserved protein of unknown function compare
PP_1466 -0.7 -2.5 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_5456 -0.7 -1.4 conserved protein of unknown function compare
PP_3245 -0.7 -1.2 conserved protein of unknown function compare
PP_4288 -0.7 -2.6 ureidoglycolate lyase compare
PP_0905 -0.7 -1.4 conserved exported protein of unknown function compare
PP_4762 -0.7 -3.2 Acyl-CoA thioesterase II compare
PP_5533 -0.7 -1.2 conserved protein of unknown function compare
PP_5225 -0.7 -1.0 frataxin compare
PP_3662 -0.7 -3.2 conserved protein of unknown function compare
PP_1813 -0.7 -2.2 ComEA-related protein compare
PP_5106 -0.7 -2.4 conserved inner membrane protein compare
PP_5313 -0.7 -1.6 DNA-binding protein HU-alpha compare
PP_0048 -0.7 -1.1 conserved protein of unknown function compare
PP_4529 -0.6 -1.9 conserved protein of unknown function compare
PP_1122 -0.6 -1.4 OmpA family protein compare
PP_3241 -0.6 -1.1 conserved exported protein of unknown function compare
PP_3919 -0.6 -2.5 conserved protein of unknown function compare
PP_1987 -0.6 -1.3 Methlytransferase, UbiE/COQ5 family compare
PP_2883 -0.6 -1.3 conserved protein of unknown function compare
PP_2132 -0.6 -2.1 Universal stress protein compare
PP_5346 -0.6 -3.7 pyruvate carboxylase subunit B compare
PP_5519 -0.6 -2.0 conserved protein of unknown function of phage origin compare
PP_0832 -0.6 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5495 -0.6 -1.7 protein of unknown function compare
PP_5015 -0.6 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1544 -0.6 -1.5 conserved protein of unknown function compare
PP_2327 -0.6 -3.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5582 -0.6 -1.0 conserved protein of unknown function compare
PP_3505 -0.6 -1.3 conserved protein of unknown function compare
PP_t29 -0.6 -0.9 tRNA-Ala compare
PP_4891 -0.6 -2.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0276 -0.6 -0.9 Transcriptional regulator, Cro/CI family compare
PP_3892 -0.6 -1.2 conserved protein of unknown function compare
PP_3773 -0.6 -2.0 conserved protein of unknown function compare
PP_5240 -0.6 -1.9 Response regulator compare
PP_0833 -0.6 -1.0 queuine tRNA-ribosyltransferase compare
PP_3946 -0.6 -1.0 HTH-type transcriptional repressor NicR compare
PP_4697 -0.6 -1.6 poly(A) polymerase compare
PP_3516 -0.6 -2.9 Transcriptional regulator, AraC family compare
PP_1026 -0.6 -1.3 Peptidase, M23/M37 family compare
PP_3914 -0.6 -2.4 conserved protein of unknown function compare
PP_2999 -0.6 -1.0 Glyoxalase family protein compare
PP_4693 -0.6 -1.9 RNA polymerase-binding transcription factor DksA compare
PP_1824 -0.5 -1.2 Smr domain protein compare
PP_4977 -0.5 -3.4 5,10-methylenetetrahydrofolate reductase compare
PP_2375 -0.5 -4.1 cobalamin-dependent methionine synthase compare
PP_4059 -0.5 -4.3 fused trehalose synthase B/maltokinase compare
PP_0740 -0.5 -2.3 Transcriptional regulator, MerR family compare
PP_1994 -0.5 -0.6 tRNA pseudouridine (38-40)synthase compare
PP_4814 -0.5 -1.8 ATP-dependent protease La domain protein compare
PP_4832 -0.5 -1.9 Precorrin-6x reductase compare
PP_4532 -0.5 -0.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4199 -0.5 -0.7 putative Lipoprotein compare
PP_5SB -0.5 -1.4 5S ribosomal RNA compare
PP_4830 -0.5 -2.0 precorrin-6Y C(5,15)-methyltransferase compare
PP_5617 -0.5 -1.8 conserved protein of unknown function compare
PP_1455 -0.5 -1.5 conserved protein of unknown function compare
PP_0339 -0.5 -1.6 Pyruvate dehydrogenase E1 component compare
PP_4362 -0.5 -1.5 conserved protein of unknown function compare
PP_2631 -0.5 -0.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5341 -0.5 -4.0 putrescine-binding periplasmic protein compare
PP_0984 -0.5 -1.6 conserved membrane protein of unknown function compare
PP_3876 -0.5 -1.4 conserved protein of unknown function compare
PP_4273 -0.5 -1.0 Transcriptional regulator, MerR family compare
PP_5612 -0.5 -2.2 protein of unknown function compare
PP_4332 -0.5 -1.8 Chemotaxis protein CheW compare
PP_0362 -0.5 -3.6 Biotin synthase compare
PP_3563 -0.5 -1.3 conserved exported protein of unknown function compare
PP_4875 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_1268 -0.5 -1.3 putative HtrA suppressor protein sohA compare
PP_0607 -0.5 -1.6 putative Type IV pili biogenesis protein FimT compare
PP_2256 -0.5 -1.8 Transcriptional regulator, Cro/CI family compare
PP_1164 -0.5 -1.0 Transcriptional regulator, LysR family compare
PP_3110 -0.5 -1.1 protein of unknown function compare
PP_4289 -0.5 -3.5 conserved membrane protein of unknown function compare
PP_0995 -0.5 -2.5 conserved membrane protein of unknown function compare
PP_1906 -0.5 -1.4 ribosomal large subunit pseudouridine synthase C compare
PP_2714 -0.5 -2.2 Sensor histidine kinase compare
PP_2820 -0.5 -1.1 HTH-type transcriptional regulator nfxB compare
PP_2740 -0.5 -1.2 Transcriptional regulator, MerR family compare
PP_2189 -0.5 -1.4 conserved protein of unknown function compare
PP_2800 -0.5 -2.1 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_0947 -0.5 -2.4 conserved membrane protein of unknown function compare
PP_4792 -0.5 -1.5 conserved exported protein of unknown function compare
PP_5232 -0.5 -1.3 conserved protein of unknown function compare
PP_3371 -0.5 -2.2 Sensor histidine kinase compare
PP_0653 -0.5 -0.9 conserved protein of unknown function compare
PP_4477 -0.5 -2.7 N-succinylarginine dihydrolase compare
PP_5491 -0.5 -1.4 conserved protein of unknown function with SEC-C motif domain compare
PP_4937 -0.5 -1.0 toluene tolerance protein compare
PP_4671 -0.5 -1.6 conserved exported protein of unknown function compare
PP_4363 -0.5 -3.1 Sensor histidine kinase/response regulator compare
PP_0848 -0.4 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4690 -0.4 -1.7 Rieske 2Fe-2S family protein compare
PP_4981 -0.4 -1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_1170 -0.4 -1.7 D-glucaro-1,5-lactonase UxuL (from data) compare
PP_2313 -0.4 -1.1 conserved membrane protein of unknown function compare
PP_1410 -0.4 -0.8 conserved protein of unknown function compare
PP_1979 -0.4 -1.0 putative Hydrolase compare
PP_3198 -0.4 -0.7 Ferredoxin, 2Fe-2S compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source e-Amino-N-Caproic Acid in Pseudomonas putida KT2440

For nitrogen source e-Amino-N-Caproic Acid across organisms