Experiment set27IT007 for Pseudomonas putida KT2440

Compare to:

6-aminocaproic acid nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +7.3 55.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +7.2 45.8 Sensor protein GacS compare
PP_2884 +4.7 36.9 XRE family transcriptional regulator compare
PP_1623 +4.2 24.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_4171 +3.2 12.5 conserved exported protein of unknown function compare
PP_4342 +2.7 12.2 flagellar synthesis regulator, putative ATPase compare
PP_2889 +2.6 5.5 putative Transmembrane regulator PrtR compare
PP_0574 +2.4 22.2 DNA-binding response regulator, LuxR family compare
PP_4008 +2.3 15.9 ATP-dependent serine protease compare
PP_5053 +2.2 12.5 Protein-export protein SecB compare
PP_1898 +2.0 7.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4994 +1.9 14.1 conserved protein of unknown function compare
PP_0806 +1.8 17.6 putative Surface adhesion protein compare
PP_1353 +1.8 0.9 conserved membrane protein of unknown function compare
PP_0804 +1.8 13.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_5309 +1.7 1.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0805 +1.7 14.9 Outer membrane efflux protein compare
PP_0856 +1.7 4.7 conserved lipoprotein of unknown function compare
PP_0803 +1.6 14.5 Protein secretion ABC efflux system, membrane fusion protein compare
PP_0409 +1.5 5.4 Sensory box histidine kinase compare
PP_0719 +1.5 2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1113 +1.5 11.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4355 +1.4 5.6 flagellar export apparatus subunit compare
PP_2000 +1.4 1.4 amidophosphoribosyl transferase compare
PP_4373 +1.4 12.1 Transcriptional regulator FleQ compare
PP_4629 +1.4 7.9 Sensory box protein compare
PP_4383 +1.4 3.5 Flagellar P-ring protein compare
PP_2144 +1.3 7.2 Transcriptional regulator, TetR family compare
PP_1364 +1.3 9.8 conserved exported protein of unknown function compare
PP_3835 +1.3 7.0 Sensory box histidine kinase compare
PP_1663 +1.2 8.8 conserved exported protein of unknown function compare
PP_4367 +1.2 6.3 Flagellar assembly protein FliH compare
PP_4173 +1.2 9.0 Sensor histidine kinase/response regulator compare
PP_4726 +1.2 3.5 Chaperone protein DnaJ compare
PP_5045 +1.2 5.0 tRNA sulfurtransferase compare
PP_4122 +1.2 2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2387 +1.2 4.2 conserved protein of unknown function compare
PP_0959 +1.1 2.5 phospholipid ABC transporter compare
PP_4396 +1.1 5.4 conserved protein of unknown function compare
PP_4271 +1.1 2.4 conserved protein of unknown function compare
PP_4384 +1.1 8.7 Flagellar L-ring protein compare
PP_2231 +1.1 1.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4382 +1.0 8.5 Peptidoglycan hydrolase FlgJ compare
PP_4370 +1.0 4.9 Flagellar hook-basal body complex protein FliE compare
PP_4366 +1.0 8.5 flagellum-specific ATP synthase compare
PP_5337 +1.0 3.7 LysR family transcriptional regulator compare
PP_4352 +1.0 7.7 flagellin export apparatus, substrate specificity protein compare
PP_3580 +1.0 2.5 conserved protein of unknown function compare
PP_1366 +1.0 1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_4471 +1.0 1.7 Magnesium transporter compare
PP_1408 +1.0 7.3 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_4361 +1.0 7.2 Flagellar hook-length control protein FliK compare
PP_4390 +1.0 6.9 flagellar basal-body rod protein FlgC compare
PP_4378 +1.0 8.2 flagellin, filament structural protein compare
PP_4710 +1.0 7.1 tRNA pseudouridine 55 synthase compare
PP_4344 +0.9 6.9 flagellar export pore protein compare
PP_3447 +0.9 2.6 conserved membrane protein of unknown function compare
PP_1788 +0.9 2.2 conserved protein of unknown function compare
PP_0961 +0.9 6.4 toluene tolerance protein compare
PP_4368 +0.9 4.8 flagellar motor switch protein compare
PP_3248 +0.9 1.9 Dyp-type peroxidase family protein compare
PP_4385 +0.9 4.9 flagellar basal-body rod protein FlgG compare
PP_3831 +0.9 4.1 conserved protein of unknown function compare
PP_3808 +0.9 3.0 Antibiotic synthesis protein MbtH compare
PP_4381 +0.9 7.5 Flagellar hook-associated protein FlgK compare
PP_4388 +0.9 8.0 Flagellar hook protein FlgE compare
PP_2181 +0.9 4.2 Transcriptional regulator, Cro/CI family compare
PP_4902 +0.9 2.4 Oligoribonuclease compare
PP_5322 +0.9 5.0 putative metal ion transporter compare
PP_1702 +0.9 2.6 Recombination-associated protein RdgC compare
PP_4343 +0.9 3.0 Flagellar biosynthesis protein FlhF compare
PP_0236 +0.9 2.9 NAD(P)H-dependent FMN reductase subunit compare
PP_4380 +0.9 7.6 Flagellar hook-associated protein FlgL compare
PP_1734 +0.9 2.4 Probable septum site-determining protein MinC compare
PP_0958 +0.9 5.4 phospholipid ABC transporter ATP-binding subunit compare
PP_0960 +0.9 4.9 phospholipid ABC transporter binding protein compare
PP_2389 +0.9 5.7 conserved protein of unknown function compare
PP_4365 +0.9 6.1 Flagellar protein FliJ compare
PP_4376 +0.9 7.3 flagellar filament capping protein compare
PP_2163 +0.9 4.6 VacJ lipoprotein compare
PP_4386 +0.9 6.1 flagellar basal-body rod protein FlgF compare
PP_4341 +0.8 5.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_2390 +0.8 5.8 Transcriptional regulator, LysR family compare
PP_4353 +0.8 5.0 Flagellar biosynthetic protein fliR compare
PP_4371 +0.8 6.6 two component system AtoC DNA-binding transcriptional activator compare
PP_4874 +0.8 0.9 50S ribosomal protein L9 compare
PP_2898 +0.8 3.0 conserved exported protein of unknown function compare
PP_3640 +0.8 3.8 Transcriptional regulator, AraC family compare
PP_3903 +0.8 2.7 conserved protein of unknown function compare
PP_4394 +0.8 4.9 flagella basal body P-ring formation protein compare
PP_4356 +0.8 4.1 Flagellar protein FliO compare
PP_5310 +0.8 2.6 junction-specific ATP-dependent DNA helicase compare
PP_1655 +0.8 4.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1208 +0.8 2.0 conserved protein of unknown function, SlyX family compare
PP_0001 +0.8 1.1 probable chromosome-partitioning protein compare
PP_1097 +0.8 1.1 Methionine--tRNA ligase compare
PP_5338 +0.8 1.6 aspartate ammonia-lyase compare
PP_5327 +0.8 1.5 putative phosphate ABC transporter, permease subunit compare
PP_3434 +0.8 1.7 conserved protein of unknown function compare
PP_1214 +0.8 1.6 putative transcriptional regulatory protein compare
PP_4398 +0.8 6.1 Major facilitator family transporter compare
PP_5508 +0.8 1.7 conserved protein of unknown function compare
PP_t12 +0.7 1.3 tRNA-Thr compare
PP_0738 +0.7 2.6 conserved protein of unknown function compare
PP_5268 +0.7 5.7 DNA-binding transcriptional repressor PuuR-putrescine compare
PP_0250 +0.7 3.0 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4917 +0.7 2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2070 +0.7 1.3 Transcriptional regulator, AraC family compare
PP_1761 +0.7 5.5 diguanylate cyclase with phosphodiesterase domain compare
PP_4701 +0.7 1.4 glucose-6-phosphate isomerase compare
PP_2402 +0.7 1.7 putative Sensor histidine kinase compare
PP_4389 +0.7 5.2 Flagellar basal-body rod modification protein FlgD compare
PP_0640 +0.7 2.5 conserved protein of unknown function compare
PP_1783 +0.7 1.2 dTDP-glucose pyrophosphorylase compare
PP_5007 +0.7 2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1112 +0.7 3.6 conserved membrane protein of unknown function compare
PP_5473 +0.7 1.5 putative transcriptional regulator, LuxR family compare
PP_4391 +0.7 4.0 flagellar basal-body rod protein FlgB compare
PP_2668 +0.7 2.7 ABC efflux transporter, ATP-binding protein compare
PP_0123 +0.7 3.8 DNA polymerase I, 5 compare
PP_5580 +0.7 2.1 protein of unknown function compare
PP_5329 +0.7 1.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4375 +0.7 5.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_4369 +0.7 5.4 Flagellar M-ring protein compare
PP_2337 +0.7 2.1 aconitate isomerase compare
PP_4422 +0.7 4.3 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_1109 +0.7 5.5 Transcriptional regulator, GntR family compare
PP_2499 +0.7 1.8 conserved protein of unknown function compare
PP_5052 +0.6 2.6 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_1799 +0.6 5.4 GDP-mannose 4,6-dehydratase compare
PP_4372 +0.6 2.8 Sensory box histidine kinase FleS compare
PP_4215 +0.6 3.0 pyoverdine biosynthesis related protein compare
PP_0566 +0.6 1.3 translation-related factor compare
PP_4989 +0.6 1.9 Protein PilJ compare
PP_4789 +0.6 3.2 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1713 +0.6 1.2 Transcriptional regulator PcaQ compare
PP_5475 +0.6 1.6 conserved protein of unknown function compare
PP_2885 +0.6 2.3 putative Transporter compare
PP_4593 +0.6 1.7 conserved protein of unknown function compare
PP_2030 +0.6 2.3 conserved protein of unknown function compare
PP_4880 +0.6 2.0 exoribonuclease R compare
PP_4354 +0.6 2.7 flagellar export apparatus subunit compare
PP_1036 +0.6 2.4 membrane-bound lytic murein transglycosylase F compare
PP_1691 +0.6 1.4 conserved protein of unknown function compare
PP_1186 +0.6 1.3 two component system DNA-binding transcriptional dual regulator compare
PP_0839 +0.6 2.2 tRNA Cm32/Um32 methyltransferase compare
PP_2928 +0.6 3.6 Saccharopine dehydrogenase compare
PP_2903 +0.6 2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4055 +0.6 4.9 Glycogen debranching enzyme compare
PP_2148 +0.6 4.8 transcription-repair coupling factor compare
PP_2388 +0.6 1.7 Transporter, LysE family compare
PP_1110 +0.6 2.8 serine acetyltransferase compare
PP_5051 +0.6 1.7 conserved protein of unknown function compare
PP_1776 +0.6 4.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5084 +0.6 4.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4172 +0.6 3.2 conserved exported protein of unknown function compare
PP_0627 +0.6 1.8 conserved protein of unknown function compare
PP_0846 +0.6 1.1 DnaK-like molecular chaperone specific for IscU compare
PP_2965 +0.6 3.9 putative tnpA repressor TnpC compare
PP_1017 +0.6 3.9 mannose/glucose ABC transporter, permease protein compare
PP_5705 +0.6 1.5 protein of unknown function compare
PP_4006 +0.6 3.8 Putative arginyl-tRNA--protein transferase compare
PP_0191 +0.6 1.9 Transcriptional regulatory protein AlgQ compare
PP_4419 +0.6 2.5 transposase compare
PP_1733 +0.6 1.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4162 +0.5 2.4 conserved membrane protein of unknown function compare
PP_4561 +0.5 1.0 stress response protein compare
PP_5027 +0.5 1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4528 +0.5 1.7 conserved protein of unknown function compare
PP_4936 +0.5 3.1 O-antigen polymerase compare
PP_4893 +0.5 3.8 GTPase HflX compare
PP_4328 +0.5 2.9 conserved protein of unknown function compare
PP_4896 +0.5 3.1 DNA mismatch repair protein MutL compare
PP_4503 +0.5 1.3 DNA-binding response regulator compare
PP_2417 +0.5 1.2 putative Iron ABC transporter, permease protein compare
PP_4631 +0.5 2.5 conserved protein of unknown function compare
PP_0948 +0.5 1.9 Phosphocarrier protein HPr compare
PP_1804 +0.5 3.7 Glycosyl transferase WbpL compare
PP_1553 +0.5 1.6 conserved protein of unknown function compare
PP_2280 +0.5 1.5 conserved protein of unknown function compare
PP_0145 +0.5 3.6 Na+/Pi-cotransporter compare
PP_2145 +0.5 2.2 beta-N-acetylglucosaminidase compare
PP_0313 +0.5 0.9 putative electron transfer flavoprotein beta subunit compare
PP_5041 +0.5 3.9 glycogen phosphorylase compare
PP_5621 +0.5 1.4 protein of unknown function compare
PP_2611 +0.5 1.5 membrane protein of unknown function compare
PP_4517 +0.5 1.6 conserved protein of unknown function compare
PP_2319 +0.5 1.9 conserved protein of unknown function compare
PP_1012 +0.5 2.1 DNA-binding response regulator compare
PP_1428 +0.5 1.0 Sigma factor AlgU negative regulatory protein compare
PP_4944 +0.5 1.3 Carbamoyltransferase compare
PP_3947 +0.5 1.8 nicotinate dehydrogenase subunit A compare
PP_3346 +0.5 1.5 Nickel transporter ATP-binding protein compare
PP_3603 +0.5 2.5 Transcriptional regulator, GntR family compare
PP_4358 +0.5 2.6 flagellar synthesis, switching and energizing component compare
PP_3682 +0.5 1.9 conserved protein of unknown function compare
PP_4054 +0.5 1.7 conserved protein of unknown function compare
PP_0396 +0.5 4.0 conserved protein of unknown function compare
PP_4130 +0.5 1.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5499 +0.5 1.2 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source e-Amino-N-Caproic Acid in Pseudomonas putida KT2440

For nitrogen source e-Amino-N-Caproic Acid across organisms