Experiment set27IT005 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.3 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0787 -7.1 -6.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1986 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0082 -6.3 -6.2 tryptophan synthase alpha chain compare
PP_1231 -6.0 -9.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0292 -5.9 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4678 -5.9 -19.9 Ketol-acid reductoisomerase compare
PP_1985 -5.8 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_0083 -5.8 -7.9 tryptophan synthase beta chain compare
PP_4680 -5.7 -18.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -5.7 -12.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -5.7 -16.8 Carbamoyl-phosphate synthase large chain compare
PP_4679 -5.6 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -5.6 -11.0 3-isopropylmalate dehydrogenase compare
PP_3511 -5.6 -12.4 Branched-chain-amino-acid aminotransferase compare
PP_4724 -5.6 -9.3 Carbamoyl-phosphate synthase small chain compare
PP_1079 -5.5 -8.9 Ornithine carbamoyltransferase compare
PP_0184 -5.5 -7.6 Argininosuccinate lyase compare
PP_4909 -5.2 -12.2 phosphoserine phosphatase compare
PP_1088 -5.2 -14.7 Argininosuccinate synthase compare
PP_5185 -5.1 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -5.0 -15.1 Histidinol dehydrogenase compare
PP_5014 -4.9 -6.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1995 -4.9 -14.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -4.9 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0422 -4.8 -9.6 Indole-3-glycerol phosphate synthase compare
PP_0967 -4.7 -16.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5128 -4.6 -8.2 Dihydroxy-acid dehydratase compare
PP_5303 -4.5 -8.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2371 -4.5 -10.0 Sulphite reductase hemoprotein, beta subunit compare
PP_5097 -4.3 -18.1 homoserine O-acetyltransferase compare
PP_0421 -4.3 -9.8 Anthranilate phosphoribosyltransferase compare
PP_0691 -4.3 -5.1 Glutamate 5-kinase compare
PP_3999 -4.3 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5289 -4.2 -7.5 Acetylglutamate kinase compare
PP_0965 -4.1 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -4.1 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4890 -3.9 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5346 -3.9 -10.0 pyruvate carboxylase subunit B compare
PP_0417 -3.9 -18.9 Anthranilate synthase component 1 compare
PP_4700 -3.8 -3.7 pantothenate synthetase compare
PP_5098 -3.8 -11.4 methionine biosynthesis protein MetW compare
PP_5347 -3.8 -14.4 pyruvate carboxylase subunit A compare
PP_2168 -3.8 -15.1 Transaldolase compare
PP_0339 -3.8 -3.7 Pyruvate dehydrogenase E1 component compare
PP_0420 -3.7 -14.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2001 -3.6 -13.9 O-succinylhomoserine sulfhydrylase compare
PP_5348 -3.6 -13.4 Transcriptional regulator, LysR family compare
PP_1022 -3.5 -8.3 glucose 6-phosphate-1-dehydrogenase compare
PP_2370 -3.2 -4.1 conserved protein of unknown function compare
PP_5155 -3.1 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -3.1 -6.6 Nitrogen regulation protein NR(I) compare
PP_1025 -3.1 -10.4 2-isopropylmalate synthase compare
PP_2327 -2.9 -9.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2328 -2.8 -9.3 Phosphoadenosine phosphosulfate reductase compare
PP_5095 -2.6 -2.5 pyrroline-5-carboxylate reductase compare
PP_2388 -2.5 -7.3 Transporter, LysE family compare
PP_0127 -2.4 -8.7 Thiol:disulfide interchange protein compare
PP_0362 -2.4 -14.6 Biotin synthase compare
PP_1664 -2.4 -6.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0291 -2.2 -2.6 conserved protein of unknown function compare
PP_3790 -2.1 -13.1 diaminopimelate epimerase compare
PP_1110 -2.1 -4.8 serine acetyltransferase compare
PP_1912 -2.1 -7.3 Phosphate acyltransferase compare
PP_4693 -2.0 -5.6 RNA polymerase-binding transcription factor DksA compare
PP_4999 -2.0 -2.5 dihydroorotase-like protein compare
PP_4364 -2.0 -5.9 putative Anti-sigma F factor antagonist compare
PP_1362 -1.9 -4.7 pyruvate kinase II compare
PP_4984 -1.9 -11.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0888 -1.9 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0366 -1.9 -7.9 dethiobiotin synthetase compare
PP_0363 -1.8 -11.2 8-amino-7-oxononanoate synthase compare
PP_0364 -1.8 -9.9 pimeloyl-[acp] methyl ester esterase compare
PP_2390 -1.8 -10.8 Transcriptional regulator, LysR family compare
PP_5350 -1.7 -5.8 Transcriptional regulator, RpiR family compare
PP_2378 -1.7 -2.9 Fe/S biogenesis protein NfuA compare
PP_5104 -1.7 -9.0 thiazole synthase compare
PP_4098 -1.7 -1.7 UvrABC system protein C compare
PP_4782 -1.7 -7.9 Phosphomethylpyrimidine kinase compare
PP_4004 -1.6 -4.3 DNA translocase FtsK compare
PP_0809 -1.6 -10.7 disulfide bond formation protein B compare
PP_1111 -1.6 -6.2 putative Synthetase compare
PP_1233 -1.5 -4.6 sulfurtransferase compare
PP_1109 -1.5 -8.4 Transcriptional regulator, GntR family compare
PP_0365 -1.4 -8.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5331 -1.4 -3.2 Long-chain acyl-CoA thioester hydrolase compare
PP_1426 -1.4 -10.6 L-aspartate oxidase compare
PP_0735 -1.4 -2.9 molybdopterin-synthase adenylyltransferase compare
PP_1215 -1.3 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_3105 -1.3 -2.3 conserved membrane protein of unknown function compare
PP_0164 -1.3 -6.4 conserved protein of unknown function compare
PP_4964 -1.3 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4922 -1.2 -8.2 Phosphomethylpyrimidine synthase compare
PP_5075 -1.2 -9.0 glutamate synthase (NADPH) beta subunit compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5227 -1.2 -7.1 diaminopimelate decarboxylase compare
PP_5508 -1.2 -1.9 conserved protein of unknown function compare
PP_1348 -1.2 -4.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4684 -1.1 -6.9 conserved protein of unknown function with kinase-like domain compare
PP_5216 -1.0 -1.8 exopolyphosphatase compare
PP_0393 -1.0 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2414 -1.0 -1.5 conserved exported protein of unknown function compare
PP_1734 -1.0 -2.3 Probable septum site-determining protein MinC compare
PP_4701 -1.0 -1.5 glucose-6-phosphate isomerase compare
PP_1733 -1.0 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_1217 -0.9 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5230 -0.9 -3.0 Tyrosine recombinase XerC compare
PP_0065 -0.9 -2.9 NAD-binding component of TrK potassium transporter compare
PP_4832 -0.9 -3.2 Precorrin-6x reductase compare
PP_4910 -0.9 -1.2 conserved protein of unknown function compare
PP_3508 -0.9 -2.9 Protein CobW compare
PP_2402 -0.9 -2.1 putative Sensor histidine kinase compare
PP_5076 -0.8 -7.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_4829 -0.8 -2.6 putative precorrin-3B synthase compare
PP_2389 -0.8 -2.8 conserved protein of unknown function compare
PP_3821 -0.8 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0261 -0.8 -4.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1269 -0.8 -1.3 Universal stress protein family compare
PP_1681 -0.8 -5.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2081 -0.8 -4.7 putative phosphoenolpyruvate synthase regulatory protein compare
PP_1237 -0.8 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3484 -0.8 -2.7 Response regulator receiver protein compare
PP_1654 -0.8 -3.1 cysteine synthase B compare
PP_1770 -0.8 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0378 -0.8 -5.3 Pyrroloquinoline-quinone synthase compare
PP_1009 -0.8 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4699 -0.8 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1366 -0.8 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_1629 -0.7 -3.0 Protein RecA compare
PP_1589 -0.7 -4.8 uridylyltransferase compare
PP_3903 -0.7 -2.1 conserved protein of unknown function compare
PP_4122 -0.7 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3102 -0.7 -3.0 conserved protein of unknown function compare
PP_4804 -0.7 -1.9 RlpA-like lipoprotein compare
PP_5628 -0.7 -2.5 conserved protein of unknown function compare
PP_0003 -0.7 -2.4 16S RNA methyltransferase compare
PP_3789 -0.7 -3.2 putative Efflux transporter compare
PP_0566 -0.7 -1.2 translation-related factor compare
PP_1468 -0.7 -2.3 Tyrosine recombinase XerD compare
PP_1493 -0.7 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1672 -0.7 -3.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0963 -0.7 -1.8 putative BolA family protein compare
PP_0379 -0.7 -4.4 Coenzyme PQQ synthesis protein B compare
PP_2302 -0.7 -3.6 DNA-binding, ATP-dependent protease compare
PP_5546 -0.7 -1.6 conserved protein of unknown function compare
PP_1352 -0.7 -2.5 UPF0234 protein PP_1352 compare
PP_4109 -0.7 -2.1 conserved protein of unknown function compare
PP_3443 -0.7 -4.5 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_2253 -0.6 -1.6 Transcriptional regulator, GntR family compare
PP_4129 -0.6 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1676 -0.6 -3.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0630 -0.6 -1.2 DNA gyrase inhibitor YacG compare
PP_0846 -0.6 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_5279 -0.6 -1.9 conserved protein of unknown function compare
PP_1677 -0.6 -3.5 Adenosyl-cobyric acid synthase compare
PP_1293 -0.6 -1.2 molybdopterin synthase small subunit compare
PP_3506 -0.6 -2.3 Magnesium chelatase, subunit ChII compare
PP_5048 -0.6 -3.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3392 -0.6 -1.6 conserved protein of unknown function compare
PP_5598 -0.6 -2.8 conserved protein of unknown function compare
PP_1713 -0.6 -2.1 Transcriptional regulator PcaQ compare
PP_3248 -0.6 -1.2 Dyp-type peroxidase family protein compare
PP_1304 -0.6 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3892 -0.6 -1.6 conserved protein of unknown function compare
PP_1675 -0.6 -4.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1216 -0.6 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0381 -0.6 -3.5 Coenzyme PQQ synthesis protein F compare
PP_3505 -0.6 -1.4 conserved protein of unknown function compare
PP_1036 -0.6 -2.5 membrane-bound lytic murein transglycosylase F compare
PP_1011 -0.6 -4.4 glucokinase compare
PP_4695 -0.6 -4.1 Sensory box histidine kinase compare
PP_5589 -0.6 -2.0 protein of unknown function containing Rhs repeat-associated core domain compare
PP_2002 -0.6 -2.0 putative enzyme compare
PP_4479 -0.6 -3.0 arginine N-succinyltransferase, subunit beta compare
PP_0848 -0.6 -1.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5423 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_0377 -0.6 -1.4 coenzyme PQQ synthesis protein D compare
PP_3788 -0.6 -4.2 putative Non-ribosomal peptide synthetase compare
PP_5035 -0.6 -3.2 Histidine utilization repressor compare
PP_4943 -0.5 -1.4 putative Glycosyl transferase compare
PP_1444 -0.5 -4.1 quinoprotein glucose dehydrogenase compare
PP_4827 -0.5 -3.9 Precorrin-2 C(20)-methyltransferase compare
PP_5507 -0.5 -2.0 protein of unknown function compare
PP_1303 -0.5 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_0376 -0.5 -3.6 Coenzyme PQQ synthesis protein E compare
PP_0150 -0.5 -1.7 conserved exported protein of unknown function compare
PP_2929 -0.5 -3.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1994 -0.5 -0.8 tRNA pseudouridine (38-40)synthase compare
PP_3766 -0.5 -1.3 Lactoylglutathione lyase compare
PP_0435 -0.5 -4.2 Peptidase, M23/M37 family compare
PP_4977 -0.5 -4.0 5,10-methylenetetrahydrofolate reductase compare
PP_4480 -0.5 -3.6 arginine N-succinyltransferase, subunit alpha compare
PP_1544 -0.5 -1.6 conserved protein of unknown function compare
PP_3507 -0.5 -4.0 Aerobic cobaltochelatase subunit CobN compare
PP_5453 -0.5 -1.0 conserved protein of unknown function compare
PP_5066 -0.5 -2.9 K(+)/H(+) antiporter NhaP2 compare
PP_2737 -0.5 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3376 -0.5 -2.5 putative phosphonate dehydrogenase compare
PP_5352 -0.5 -3.8 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0241 -0.5 -1.4 Transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms