Experiment set26S652 for Pseudomonas simiae WCS417

Compare to:

NaCl stress 250 mM

200 most important genes:

  gene name fitness t score description  
PS417_20785 -3.2 -2.1 transcriptional regulator compare
PS417_24615 -2.7 -1.5 hypothetical protein compare
PS417_20775 -2.6 -4.1 coproporphyrinogen III oxidase compare
PS417_00185 -2.4 -2.3 tryptophan synthase subunit beta compare
PS417_22565 -2.2 -0.9 formyltetrahydrofolate deformylase compare
PS417_23770 -2.1 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_06375 -2.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_02880 -1.5 -0.8 copper chaperone compare
PS417_07140 -1.5 -2.3 peptidase M48 compare
PS417_02870 -1.4 -5.0 TonB-dependent receptor compare
PS417_01620 -1.1 -1.9 preprotein translocase subunit SecB compare
PS417_07560 -1.1 -2.4 universal stress protein UspA compare
PS417_18560 -1.1 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27245 -1.0 -2.2 aminotransferase DegT compare
PS417_02485 -1.0 -1.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_11705 -1.0 -4.3 cyclic peptide transporter compare
PS417_25790 -1.0 -3.2 aminoglycoside phosphotransferase compare
PS417_06680 -1.0 -4.1 nuclease PIN compare
PS417_08125 -1.0 -0.5 prephenate dehydratase compare
PS417_19490 -1.0 -3.5 mechanosensitive ion channel protein compare
PS417_07710 -1.0 -1.6 membrane protein compare
PS417_05100 -0.9 -2.7 RNA polymerase sigma factor compare
PS417_00045 -0.9 -1.1 glycerol acyltransferase compare
PS417_27195 -0.9 -1.1 N-acetylglutamate synthase compare
PS417_25650 -0.9 -1.9 anhydro-N-acetylmuramic acid kinase compare
PS417_17440 -0.9 -2.9 beta-lactamase compare
PS417_06675 -0.9 -2.5 ATP-dependent helicase compare
PS417_16055 -0.9 -3.6 biopolymer transporter TolR compare
PS417_01270 -0.9 -2.5 iron ABC transporter substrate-binding protein compare
PS417_24745 -0.9 -1.9 gamma-glutamyl phosphate reductase compare
PS417_25725 -0.9 -6.5 anthranilate synthase component I compare
PS417_04020 -0.8 -5.5 glycine/betaine ABC transporter substrate-binding protein conserved
PS417_02475 -0.8 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_18310 -0.8 -0.5 hypothetical protein compare
PS417_26850 -0.8 -1.1 twin-arginine translocation pathway signal protein compare
PS417_04015 -0.8 -2.6 choline ABC transporter permease conserved
PS417_23205 -0.8 -2.1 transcriptional regulator compare
PS417_22060 -0.8 -1.5 hypothetical protein compare
PS417_22815 -0.8 -2.6 permease compare
PS417_00160 -0.8 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_28325 -0.8 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_07400 -0.8 -2.1 hypothetical protein compare
PS417_04800 -0.7 -2.8 alginate O-acetyltransferase compare
PS417_04010 -0.7 -4.4 glycine/betaine ABC transporter ATP-binding protein conserved
PS417_01575 -0.7 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_17490 -0.7 -1.7 ABC transporter ATP-binding protein compare
PS417_25380 -0.7 -2.4 hypothetical protein compare
PS417_27795 -0.7 -0.2 orotate phosphoribosyltransferase compare
PS417_26340 -0.7 -3.6 betaine-aldehyde dehydrogenase compare
PS417_14835 -0.7 -1.5 amidase compare
PS417_08135 -0.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03100 -0.7 -1.0 pilus assembly protein compare
PS417_20755 -0.7 -2.2 membrane protein compare
PS417_03785 -0.7 -1.5 pilus assembly protein PilV compare
PS417_26120 -0.7 -1.0 hypothetical protein compare
PS417_04025 -0.7 -3.8 glycine/betaine ABC transporter permease conserved
PS417_25720 -0.7 -3.8 anthranilate synthase component II compare
PS417_27135 -0.7 -0.7 glutamine synthetase compare
PS417_08320 -0.7 -2.3 metal-chelation protein CHAD compare
PS417_02695 -0.7 -1.6 protein hupE compare
PS417_24500 -0.7 -1.9 DEAD/DEAH box helicase compare
PS417_22520 -0.7 -1.1 histidine kinase compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_05160 -0.6 -1.2 DNA polymerase III subunit chi compare
PS417_00080 -0.6 -4.1 potassium transporter peripheral membrane component compare
PS417_21480 -0.6 -0.9 23S rRNA pseudouridylate synthase compare
PS417_01855 -0.6 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_07170 -0.6 -2.4 hypothetical protein compare
PS417_22690 -0.6 -2.3 phosphogluconate dehydratase compare
PS417_06945 -0.6 -1.1 membrane protein compare
PS417_07540 -0.6 -1.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_04375 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_05905 -0.6 -1.2 hypothetical protein compare
PS417_06685 -0.6 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_26335 -0.6 -1.7 BetI family transcriptional regulator compare
PS417_26345 -0.6 -3.6 choline dehydrogenase compare
PS417_22450 -0.6 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_13510 -0.6 -1.0 polyketide cyclase compare
PS417_18710 -0.6 -4.2 hypothetical protein compare
PS417_20700 -0.6 -3.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_27535 -0.6 -4.3 chemotaxis protein CheY compare
PS417_02745 -0.6 -0.7 FMN-dependent NADH-azoreductase compare
PS417_26370 -0.6 -3.0 RNA helicase compare
PS417_23915 -0.6 -1.8 pantoate--beta-alanine ligase compare
PS417_18595 -0.6 -2.0 3-isopropylmalate dehydratase compare
PS417_23830 -0.6 -4.3 hypothetical protein compare
PS417_18105 -0.6 -1.2 iron-dicitrate transporter substrate-binding subunit compare
PS417_27875 -0.6 -3.0 histidine kinase compare
PS417_00355 -0.6 -2.2 metal ABC transporter permease compare
PS417_27595 -0.6 -1.5 recombinase XerC compare
PS417_06200 -0.5 -2.7 protein-PII uridylyltransferase compare
PS417_10045 -0.5 -2.0 hypothetical protein compare
PS417_25270 -0.5 -1.7 NrdR family transcriptional regulator compare
PS417_17240 -0.5 -2.0 trigger factor compare
PS417_02415 -0.5 -2.5 phosphoserine phosphatase compare
PS417_08730 -0.5 -1.2 cytochrome C compare
PS417_01560 -0.5 -1.0 imidazoleglycerol-phosphate dehydratase compare
PS417_13140 -0.5 -1.6 oxidoreductase compare
PS417_13300 -0.5 -1.7 short-chain dehydrogenase compare
PS417_11810 -0.5 -1.0 oxidoreductase compare
PS417_16490 -0.5 -1.0 cell division protein FtsK compare
PS417_07470 -0.5 -1.0 hypothetical protein compare
PS417_02045 -0.5 -2.5 3-oxoacyl-ACP synthase compare
PS417_22575 -0.5 -3.8 exonuclease I compare
PS417_17795 -0.5 -1.2 ABC transporter permease compare
PS417_23500 -0.5 -1.8 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_25645 -0.5 -2.6 peptidase M23 compare
PS417_01565 -0.5 -3.4 imidazole glycerol phosphate synthase compare
PS417_16750 -0.5 -1.3 ABC transporter ATP-binding protein compare
PS417_16320 -0.5 -2.1 protein tyrosine phosphatase compare
PS417_22015 -0.5 -1.1 hypothetical protein compare
PS417_00085 -0.5 -1.7 16S rRNA methyltransferase compare
PS417_20040 -0.5 -2.7 cobyric acid synthase compare
PS417_02560 -0.5 -0.9 23S rRNA methyltransferase compare
PS417_23215 -0.5 -2.6 RNA methyltransferase compare
PS417_15305 -0.5 -1.3 type VI secretion protein compare
PS417_12570 -0.5 -1.9 AP endonuclease compare
PS417_15875 -0.5 -1.1 LuxR family transcriptional regulator compare
PS417_09210 -0.5 -0.9 TetR family transcriptional regulator compare
PS417_18395 -0.5 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_22205 -0.5 -3.4 potassium transporter TrkH compare
PS417_10840 -0.5 -1.1 amidase compare
PS417_04915 -0.5 -1.5 glutamine ABC transporter ATP-binding protein compare
PS417_03045 -0.5 -1.3 hypothetical protein compare
PS417_17215 -0.5 -1.0 peptidylprolyl isomerase compare
PS417_04875 -0.5 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00580 -0.5 -1.6 acyl-CoA dehydrogenase compare
PS417_16555 -0.5 -1.0 cupin compare
PS417_02670 -0.5 -2.1 ABC transporter compare
PS417_04365 -0.5 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_09010 -0.5 -1.1 phosphohistidine phosphatase compare
PS417_23250 -0.5 -2.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_08050 -0.5 -1.8 amino acid amidase compare
PS417_28170 -0.5 -2.3 transcriptional regulator compare
PS417_19285 -0.5 -1.3 ankyrin compare
PS417_12740 -0.5 -2.0 secretion protein HlyD compare
PS417_06775 -0.5 -1.9 antibiotic transporter compare
PS417_03380 -0.5 -0.8 hypothetical protein compare
PS417_16520 -0.5 -1.4 cold-shock protein compare
PS417_18090 -0.5 -2.4 iron ABC transporter compare
PS417_22875 -0.4 -1.3 hypothetical protein compare
PS417_13245 -0.4 -2.0 saccharopine dehydrogenase compare
PS417_19625 -0.4 -1.5 histidine kinase compare
PS417_02865 -0.4 -2.1 peptidase compare
PS417_00385 -0.4 -0.6 Fur family transcriptional regulator compare
PS417_20030 -0.4 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_17580 -0.4 -2.7 citrulline utilization hydrolase (from data) compare
PS417_03155 -0.4 -2.6 transcriptional regulator compare
PS417_01340 -0.4 -2.3 agmatine deiminase compare
PS417_02210 -0.4 -2.8 diguanylate cyclase compare
PS417_28230 -0.4 -1.6 transcriptional regulator compare
PS417_12520 -0.4 -1.6 hypothetical protein compare
PS417_26685 -0.4 -1.8 hypothetical protein compare
PS417_23995 -0.4 -0.6 preprotein translocase subunit SecG compare
PS417_24335 -0.4 -3.1 50S rRNA methyltransferase compare
PS417_12660 -0.4 -0.8 hypothetical protein compare
PS417_04080 -0.4 -1.1 peptide ABC transporter substrate-binding protein compare
PS417_20130 -0.4 -3.7 dehydrogenase compare
PS417_05575 -0.4 -2.9 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_23015 -0.4 -1.4 NGG1p interacting factor 3 protein, NIF3 compare
PS417_12650 -0.4 -1.7 magnesium transporter compare
PS417_03915 -0.4 -1.5 tRNA-Thr compare
PS417_04410 -0.4 -1.2 hypothetical protein compare
PS417_09470 -0.4 -1.0 hypothetical protein compare
PS417_15090 -0.4 -1.3 hypothetical protein compare
PS417_23575 -0.4 -2.2 hypothetical protein compare
PS417_17125 -0.4 -1.7 transcriptional regulator compare
PS417_27105 -0.4 -2.2 spermidine/putrescine ABC transporter permease compare
PS417_17565 -0.4 -2.1 branched-chain amino acid aminotransferase compare
PS417_09570 -0.4 -1.6 GCN5 family acetyltransferase compare
PS417_20155 -0.4 -2.4 23S rRNA methyltransferase compare
PS417_19650 -0.4 -1.9 chemotaxis protein CheW compare
PS417_19665 -0.4 -1.7 flagellar motor protein MotD compare
PS417_26510 -0.4 -3.2 5,10-methylenetetrahydrofolate reductase compare
PS417_19195 -0.4 -1.3 hypothetical protein compare
PS417_13735 -0.4 -1.1 hypothetical protein compare
PS417_18585 -0.4 -1.9 3-isopropylmalate dehydrogenase compare
PS417_11485 -0.4 -1.3 AraC family transcriptional regulator compare
PS417_12310 -0.4 -2.7 methionine synthase compare
PS417_10265 -0.4 -1.3 peptidase compare
PS417_21270 -0.4 -1.1 translation initiation factor 2 compare
PS417_20525 -0.4 -1.7 LysR family transcriptional regulator compare
PS417_07655 -0.4 -1.5 glycerophosphodiester phosphodiesterase compare
PS417_17595 -0.4 -1.6 amino acid ABC transporter permease compare
PS417_05025 -0.4 -1.2 maleylacetoacetate isomerase compare
PS417_23545 -0.4 -1.0 gamma-glutamyl kinase compare
PS417_13610 -0.4 -2.3 long-chain fatty acid--CoA ligase compare
PS417_02555 -0.4 -3.0 exoribonuclease R compare
PS417_00190 -0.4 -1.3 LysR family transcriptional regulator compare
PS417_11180 -0.4 -1.2 TetR family transcriptional regulator compare
PS417_10130 -0.4 -2.2 hypothetical protein compare
PS417_19415 -0.4 -0.9 allantoinase compare
PS417_07820 -0.4 -0.9 transposase compare
PS417_17515 -0.4 -1.6 GfdT protein compare
PS417_09150 -0.4 -1.5 energy transducer TonB compare
PS417_24230 -0.4 -2.2 ATP-dependent protease compare
PS417_27520 -0.4 -1.8 uroporphyrin-III methyltransferase compare
PS417_15890 -0.4 -0.9 RNA polymerase sigma factor compare
PS417_12855 -0.4 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26175 -0.4 -0.6 sarcosine oxidase subunit gamma compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Sodium Chloride across organisms