Experiment set26S650 for Pseudomonas simiae WCS417

Compare to:

NaCl stress 25 mM

200 most important genes:

  gene name fitness t score description  
PS417_20775 -2.3 -4.0 coproporphyrinogen III oxidase compare
PS417_03260 -2.3 -1.2 5S ribosomal RNA compare
PS417_20785 -2.3 -2.1 transcriptional regulator compare
PS417_22565 -2.2 -0.8 formyltetrahydrofolate deformylase compare
PS417_16555 -2.2 -2.6 cupin compare
PS417_24745 -2.1 -4.6 gamma-glutamyl phosphate reductase compare
PS417_24615 -2.0 -1.4 hypothetical protein compare
PS417_06680 -1.9 -6.0 nuclease PIN compare
PS417_24710 -1.7 -6.5 lipoprotein compare
PS417_11705 -1.6 -5.3 cyclic peptide transporter compare
PS417_22570 -1.5 -0.9 H-NS histone compare
PS417_02880 -1.5 -0.8 copper chaperone compare
PS417_28070 -1.5 -5.5 phosphate ABC transporter ATP-binding protein compare
PS417_23770 -1.4 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_04365 -1.3 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_07560 -1.3 -2.2 universal stress protein UspA compare
PS417_08155 -1.3 -1.2 integration host factor subunit beta compare
PS417_07140 -1.3 -2.5 peptidase M48 compare
PS417_23545 -1.3 -2.7 gamma-glutamyl kinase compare
PS417_02885 -1.3 -2.0 hypothetical protein compare
PS417_25710 -1.3 -1.5 indole-3-glycerol-phosphate synthase compare
PS417_01915 -1.2 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02870 -1.2 -4.1 TonB-dependent receptor compare
PS417_00185 -1.2 -1.9 tryptophan synthase subunit beta compare
PS417_27135 -1.1 -1.0 glutamine synthetase compare
PS417_21480 -1.1 -1.6 23S rRNA pseudouridylate synthase compare
PS417_18560 -1.1 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27870 -1.1 -3.1 ATP-dependent DNA helicase RecG compare
PS417_01575 -1.1 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27245 -1.0 -2.0 aminotransferase DegT compare
PS417_08125 -1.0 -0.5 prephenate dehydratase compare
PS417_01620 -1.0 -2.1 preprotein translocase subunit SecB compare
PS417_25790 -1.0 -2.6 aminoglycoside phosphotransferase compare
PS417_22815 -1.0 -3.1 permease compare
PS417_24785 -1.0 -1.8 nucleoside-diphosphate sugar epimerase compare
PS417_01030 -1.0 -2.1 glutamine ABC transporter substrate-binding protein compare
PS417_12585 -1.0 -5.7 acriflavine resistance protein B compare
PS417_28080 -1.0 -7.2 phosphate ABC transporter permease compare
PS417_08135 -0.9 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00180 -0.9 -1.2 tryptophan synthase subunit alpha compare
PS417_09085 -0.9 -2.0 hypothetical protein compare
PS417_08540 -0.9 -2.0 RNA helicase compare
PS417_23775 -0.9 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_18310 -0.8 -0.5 hypothetical protein compare
PS417_17550 -0.8 -2.7 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_25650 -0.8 -1.9 anhydro-N-acetylmuramic acid kinase compare
PS417_02485 -0.8 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04875 -0.8 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
PS417_16490 -0.8 -1.0 cell division protein FtsK compare
PS417_17580 -0.8 -2.9 citrulline utilization hydrolase (from data) compare
PS417_16195 -0.8 -1.3 AraC family transcriptional regulator compare
PS417_21630 -0.8 -1.6 magnesium transporter compare
PS417_10675 -0.8 -1.3 TetR family transcriptional regulator compare
PS417_09470 -0.8 -1.4 hypothetical protein compare
PS417_02820 -0.8 -1.3 urea ABC transporter ATP-binding protein compare
PS417_22780 -0.8 -3.6 XRE family transcriptional regulator compare
PS417_17565 -0.8 -3.4 branched-chain amino acid aminotransferase compare
PS417_00160 -0.8 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_22520 -0.7 -1.3 histidine kinase compare
PS417_02555 -0.7 -4.7 exoribonuclease R compare
PS417_23725 -0.7 -3.2 methylmalonate-semialdehyde dehydrogenase compare
PS417_21270 -0.7 -1.8 translation initiation factor 2 compare
PS417_06530 -0.7 -1.4 membrane protein compare
PS417_16990 -0.7 -3.8 acyl-CoA dehydrogenase compare
PS417_17215 -0.7 -1.4 peptidylprolyl isomerase compare
PS417_25315 -0.7 -2.1 membrane protein compare
PS417_21210 -0.7 -1.7 amidotransferase compare
PS417_05100 -0.7 -2.3 RNA polymerase sigma factor compare
PS417_14065 -0.7 -3.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23205 -0.7 -3.8 transcriptional regulator compare
PS417_10040 -0.7 -1.2 MFS transporter compare
PS417_18020 -0.7 -1.4 hypothetical protein compare
PS417_27795 -0.7 -0.2 orotate phosphoribosyltransferase compare
PS417_16510 -0.7 -1.9 Clp protease ClpX compare
PS417_26335 -0.7 -2.0 BetI family transcriptional regulator compare
PS417_05010 -0.7 -1.2 IclR family transcriptional regulator compare
PS417_26645 -0.7 -2.3 chemotaxis protein compare
PS417_26685 -0.6 -2.2 hypothetical protein compare
PS417_23095 -0.6 -1.0 exodeoxyribonuclease compare
PS417_25725 -0.6 -4.9 anthranilate synthase component I compare
PS417_03560 -0.6 -0.7 GTP-binding protein compare
PS417_01145 -0.6 -0.9 taurine transporter ATP-binding subunit compare
PS417_20985 -0.6 -0.4 porin compare
PS417_18105 -0.6 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_05820 -0.6 -2.0 recombinase RecX compare
PS417_00085 -0.6 -2.2 16S rRNA methyltransferase compare
PS417_07640 -0.6 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01400 -0.6 -1.9 hypothetical protein compare
PS417_27935 -0.6 -1.2 type VI secretion protein compare
PS417_27195 -0.6 -1.0 N-acetylglutamate synthase compare
PS417_22690 -0.6 -2.4 phosphogluconate dehydratase compare
PS417_05155 -0.6 -2.1 DNA polymerase III subunit chi compare
PS417_27875 -0.6 -2.9 histidine kinase compare
PS417_04585 -0.6 -0.6 hypothetical protein compare
PS417_20130 -0.6 -4.4 dehydrogenase compare
PS417_03785 -0.6 -1.2 pilus assembly protein PilV compare
PS417_23160 -0.6 -1.7 50S rRNA methyltransferase compare
PS417_02415 -0.6 -1.7 phosphoserine phosphatase compare
PS417_07845 -0.6 -2.1 transcriptional regulator compare
PS417_08170 -0.6 -3.4 capsular biosynthesis protein compare
PS417_03465 -0.6 -1.3 type III secretion protein compare
PS417_27515 -0.6 -2.5 heme biosynthesis protein HemY compare
PS417_02800 -0.6 -1.5 acetyltransferase compare
PS417_18395 -0.6 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_28075 -0.6 -2.6 phosphate ABC transporter permease compare
PS417_00650 -0.6 -0.7 LysR family transcriptional regulator compare
PS417_16400 -0.5 -1.8 NAD(P)H-quinone oxidoreductase compare
PS417_07170 -0.5 -2.0 hypothetical protein compare
PS417_22795 -0.5 -1.1 exclusion suppressor FxsA compare
PS417_20700 -0.5 -2.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_20025 -0.5 -0.8 alpha-ribazole phosphatase compare
PS417_16855 -0.5 -1.2 cation:proton antiporter compare
PS417_28220 -0.5 -1.7 LysR family transcriptional regulator compare
PS417_21430 -0.5 -0.7 3-oxoacyl-ACP synthase compare
PS417_19860 -0.5 -4.4 flagellar hook protein FlgL compare
PS417_05710 -0.5 -1.9 hypothetical protein compare
PS417_20755 -0.5 -1.9 membrane protein compare
PS417_04420 -0.5 -3.6 histidinol dehydrogenase compare
PS417_23830 -0.5 -3.7 hypothetical protein compare
PS417_19490 -0.5 -2.1 mechanosensitive ion channel protein compare
PS417_26695 -0.5 -1.1 uracil phosphoribosyltransferase compare
PS417_04060 -0.5 -2.0 dipeptide ABC transporter, permease component (from data) compare
PS417_06600 -0.5 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_14210 -0.5 -1.7 hypothetical protein compare
PS417_20705 -0.5 -0.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_20055 -0.5 -2.2 cob(II)yrinic acid a,c-diamide reductase compare
PS417_24800 -0.5 -1.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_07375 -0.5 -2.6 ribonuclease D compare
PS417_24500 -0.5 -1.5 DEAD/DEAH box helicase compare
PS417_27380 -0.5 -1.5 GntR family transcriptional regulator compare
PS417_02955 -0.5 -2.5 hypothetical protein compare
PS417_06685 -0.5 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_19840 -0.5 -3.7 flagellar cap protein FliD compare
PS417_01710 -0.5 -3.1 histidine utilization repressor compare
PS417_20855 -0.5 -0.6 hypothetical protein compare
PS417_11570 -0.5 -1.5 ABC transporter permease compare
PS417_20030 -0.5 -2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_21830 -0.5 -2.5 TetR family transcriptional regulator compare
PS417_26470 -0.5 -1.4 cytochrome C compare
PS417_10445 -0.5 -2.2 LysR family transcriptional regulator compare
PS417_23915 -0.5 -1.8 pantoate--beta-alanine ligase compare
PS417_00220 -0.5 -1.0 hypothetical protein compare
PS417_28085 -0.5 -3.2 phosphate-binding protein compare
PS417_19415 -0.5 -2.1 allantoinase compare
PS417_18435 -0.5 -1.4 hypothetical protein compare
PS417_00375 -0.5 -1.4 membrane protein compare
PS417_07710 -0.5 -1.0 membrane protein compare
PS417_19865 -0.5 -4.0 flagellar hook protein FlgK compare
PS417_02745 -0.5 -0.7 FMN-dependent NADH-azoreductase compare
PS417_13255 -0.5 -1.0 ABC transporter compare
PS417_23250 -0.5 -2.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_04590 -0.5 -2.6 methyltransferase compare
PS417_01600 -0.5 -2.3 peptidase M23 compare
PS417_08295 -0.5 -1.4 ATPase compare
PS417_27300 -0.5 -0.4 cell division protein ZapA compare
PS417_00580 -0.5 -2.5 acyl-CoA dehydrogenase compare
PS417_13580 -0.5 -0.9 AraC family transcriptional regulator compare
PS417_12565 -0.5 -2.1 2-dehydro-3-deoxygluconokinase compare
PS417_01285 -0.5 -1.3 haloacid dehalogenase compare
PS417_01825 -0.5 -1.6 chemotaxis protein compare
PS417_01290 -0.5 -1.0 ADP-ribose diphosphatase compare
PS417_00345 -0.5 -1.0 copper-binding protein compare
PS417_19850 -0.5 -2.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_24535 -0.5 -1.5 membrane protein compare
PS417_06200 -0.5 -1.8 protein-PII uridylyltransferase compare
PS417_16520 -0.5 -1.5 cold-shock protein compare
PS417_07165 -0.5 -2.3 dihydrodipicolinate synthase compare
PS417_06635 -0.5 -1.1 ferredoxin compare
PS417_03080 -0.4 -1.6 hypothetical protein compare
PS417_15285 -0.4 -0.8 type VI secretion protein compare
PS417_12310 -0.4 -2.7 methionine synthase compare
PS417_22410 -0.4 -2.6 hypothetical protein compare
PS417_21510 -0.4 -1.4 histidine kinase compare
PS417_05880 -0.4 -2.0 ribosomal protein S12 methylthiotransferase compare
PS417_01160 -0.4 -1.7 hypothetical protein compare
PS417_21065 -0.4 -1.3 3-methylitaconate isomerase compare
PS417_22620 -0.4 -1.8 pyruvate kinase compare
PS417_08580 -0.4 -2.5 histidine kinase compare
PS417_23900 -0.4 -3.3 poly(A) polymerase compare
PS417_09475 -0.4 -2.1 class V aminotransferase compare
PS417_26220 -0.4 -1.6 Rieske (2Fe-2S) protein compare
PS417_20480 -0.4 -1.6 hypothetical protein compare
PS417_00385 -0.4 -0.6 Fur family transcriptional regulator compare
PS417_06780 -0.4 -1.4 TetR family transcriptional regulator compare
PS417_00355 -0.4 -1.2 metal ABC transporter permease compare
PS417_07875 -0.4 -0.7 hypothetical protein compare
PS417_08410 -0.4 -1.4 hypothetical protein compare
PS417_10095 -0.4 -1.3 hypothetical protein compare
PS417_22015 -0.4 -1.4 hypothetical protein compare
PS417_17240 -0.4 -1.5 trigger factor compare
PS417_22350 -0.4 -1.3 Fis family transcriptional regulator compare
PS417_06165 -0.4 -1.3 thiamine biosynthesis protein ThiF compare
PS417_02770 -0.4 -1.6 membrane protein compare
PS417_24580 -0.4 -2.5 pseudouridine synthase compare
PS417_14010 -0.4 -3.1 multidrug transporter compare
PS417_23215 -0.4 -2.4 RNA methyltransferase compare
PS417_16055 -0.4 -1.7 biopolymer transporter TolR compare
PS417_05250 -0.4 -2.0 hypothetical protein compare
PS417_22300 -0.4 -0.9 LTXXQ domain protein compare
PS417_24765 -0.4 -2.0 membrane protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Sodium Chloride across organisms