gene name fitness t score description b1882 cheY +1.7 1.4 chemotaxis regulator transmitting signal to flagellar motor component (NCBI) compare b0178 hlpA +1.5 7.4 periplasmic chaperone (NCBI) compare b3261 fis +1.2 5.0 DNA-binding protein Fis (NCBI) compare b3979 thrT +1.2 0.9 tRNA-Thr (NCBI) compare b1236 galU +1.2 6.4 glucose-1-phosphate uridylyltransferase (NCBI) compare b1730 ydjO +0.9 1.6 predicted protein (RefSeq) compare b0059 hepA +0.9 8.3 ATP-dependent helicase HepA (NCBI) compare b3643 rph +0.9 2.7 ribonuclease PH (NCBI) compare b4699 fnrS +0.9 1.3 FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) compare b3977 tyrU +0.9 1.6 tRNA-Tyr (NCBI) compare b3842 rfaH +0.8 5.6 transcriptional activator RfaH (NCBI) compare b1557 cspB +0.8 2.8 Qin prophage; cold shock protein (NCBI) compare b3630 rfaP +0.8 6.7 kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) compare b4609 ryfD +0.8 3.9 Novel sRNA, function unknown (RefSeq) compare b4203 rplI +0.8 4.2 50S ribosomal protein L9 (NCBI) compare b3181 greA +0.7 3.6 transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) compare b4000 hupA +0.7 4.9 HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) compare b1161 ycgX +0.7 1.2 hypothetical protein (NCBI) compare b2903 gcvP +0.7 6.3 glycine dehydrogenase (NCBI) compare b1085 b1085 +0.7 2.8 orf, hypothetical protein (VIMSS) compare b3206 npr +0.7 3.5 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) compare b2808 gcvA +0.6 3.4 DNA-binding transcriptional dual regulator (NCBI) compare b2829 ptsP +0.6 5.7 fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) compare b2741 rpoS +0.6 4.0 RNA polymerase sigma factor (NCBI) compare b0610 rnk +0.6 3.0 nucleoside diphosphate kinase regulator (NCBI) compare b3631 rfaG +0.6 5.5 glucosyltransferase I (NCBI) compare b0661 miaB +0.6 4.7 isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) compare b3107 yhaL +0.6 1.7 orf, hypothetical protein (VIMSS) compare b1954 dsrA +0.6 2.4 regulatory antisense RNA (NCBI) compare b4436 ryeC +0.6 1.7 Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) compare b0053 surA +0.6 3.5 peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) compare b2017 yefM +0.6 1.8 orf, hypothetical protein (VIMSS) compare b1380 ldhA +0.6 2.1 D-lactate dehydrogenase (NCBI) compare b4655 ythA +0.6 1.5 expressed protein (RefSeq) compare b1362 rzpR +0.6 2.0 putative Rac prophage endopeptidase (VIMSS) compare b2990 hybG +0.6 2.8 hydrogenase 2 accessory protein (NCBI) compare b2586 yfiM +0.6 3.2 predicted protein (RefSeq) compare b2906 visC +0.5 3.5 hypothetical protein (NCBI) compare b1518 lsrG +0.5 1.9 autoinducer-2 (AI-2) modifying protein LsrG (NCBI) compare b3620 rfaF +0.5 3.1 ADP-heptose:LPS heptosyltransferase II (NCBI) compare b2962 yggX +0.5 2.1 hypothetical protein (NCBI) compare b3632 rfaQ +0.5 4.9 lipopolysaccharide core biosynthesis protein (NCBI) compare b0707 ybgA +0.5 1.6 hypothetical protein (NCBI) compare b2448 yffQ +0.5 2.7 CPZ-55 prophage; predicted protein (RefSeq) compare b1370 insH-5 +0.5 1.3 Rac prophage; IS5 transposase and trans-activator (NCBI) compare b1527 yneK +0.5 1.6 hypothetical protein (NCBI) compare b4578 insP +0.5 1.2 no description compare b2434 b2434 +0.5 2.2 orf, hypothetical protein (VIMSS) compare b0310 ykgH +0.5 0.9 predicted inner membrane protein (NCBI) compare b1821 b1821 +0.5 2.4 orf, hypothetical protein (VIMSS) compare b4546 ypeB +0.5 1.0 hypothetical protein (NCBI) compare b1819 manZ +0.5 1.9 mannose-specific enzyme IID component of PTS (NCBI) compare b2051 wcaH +0.5 1.6 GDP-mannose mannosyl hydrolase (VIMSS) compare b1992 cobS +0.5 1.9 cobalamin synthase (NCBI) compare b2618 b2618 +0.5 1.9 orf, hypothetical protein (VIMSS) compare b1399 paaX +0.5 1.7 DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) compare b0990 cspG +0.4 0.5 DNA-binding transcriptional regulator (NCBI) compare b1627 rsxA +0.4 1.6 Na(+)-translocating NADH-quinone reductase subunit E (NCBI) compare b0785 moaE +0.4 2.3 molybdopterin synthase, large subunit (NCBI) compare b4595 yciY +0.4 1.6 hypothetical protein (RefSeq) compare b2572 rseA +0.4 2.0 anti-sigma factor (NCBI) compare b4045 yjbJ +0.4 1.8 predicted stress response protein (NCBI) compare b2904 gcvH +0.4 2.0 glycine cleavage system protein H (NCBI) compare b0881 clpS +0.4 1.4 ATP-dependent Clp protease adaptor protein ClpS (NCBI) compare b1628 rsxB +0.4 1.7 electron transport complex protein RnfB (NCBI) compare b1558 cspF +0.4 1.4 Qin prophage; cold shock protein (NCBI) compare b4533 ynfO +0.4 1.0 Qin prophage; predicted protein (NCBI) compare b3961 oxyR +0.4 3.2 DNA-binding transcriptional dual regulator (NCBI) compare b4590 ybfK +0.4 0.7 hypothetical protein (RefSeq) compare b0471 ybaB +0.4 2.1 hypothetical protein (NCBI) compare b1070 flgN +0.4 1.0 export chaperone for FlgK and FlgL (NCBI) compare b2617 smpA +0.4 1.4 small membrane protein A (VIMSS) compare b4613 dinQ +0.4 1.2 Damage inducible, function unknown (RefSeq) compare b1306 pspC +0.4 1.7 DNA-binding transcriptional activator (NCBI) compare b1190 dadX +0.4 2.8 alanine racemase (NCBI) compare b1007 b1007 +0.4 1.1 orf, hypothetical protein (VIMSS) compare b1671 ydhX +0.4 1.2 predicted 4Fe-4S ferridoxin-type protein (RefSeq) compare b1253 yciA +0.4 1.4 predicted hydrolase (NCBI) compare b1667 ydhR +0.4 1.6 hypothetical protein (NCBI) compare b2920 ygfH +0.4 2.2 propionyl-CoA:succinate-CoA transferase (NCBI) compare b4529 ydbJ +0.4 0.7 hypothetical protein (NCBI) compare b1795 yeaQ +0.4 2.1 conserved inner membrane protein (NCBI) compare b1476 fdnI +0.4 0.7 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) compare b2512 yfgL +0.4 2.5 protein assembly complex, lipoprotein component (NCBI) compare b3933 ftsN +0.4 3.1 essential cell division protein (NCBI) compare b1726 yniB +0.4 1.2 predicted inner membrane protein (NCBI) compare b1942 fliJ +0.4 0.9 flagellar biosynthesis chaperone (NCBI) compare b0730 mngR +0.4 0.9 DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) compare b1855 lpxM +0.4 1.7 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) compare b2579 yfiD +0.4 1.0 pyruvate formate lyase subunit (NCBI) compare b3356 yhfA +0.4 1.8 hypothetical protein (NCBI) compare b0871 poxB +0.4 2.3 pyruvate dehydrogenase (NCBI) compare b1553 ydfP +0.3 1.3 Qin prophage; conserved protein (NCBI) compare b1020 phoH +0.3 2.1 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) compare b0970 yccA +0.3 1.5 inner membrane protein (NCBI) compare b0854 potF +0.3 2.1 putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) compare b1925 fliS +0.3 2.5 flagellar protein FliS (NCBI) compare b2399 yfeD +0.3 2.3 predicted DNA-binding transcriptional regulator (RefSeq) compare b2510 b2510 +0.3 1.9 orf, hypothetical protein (VIMSS) compare b1686 ydiI +0.3 1.2 hypothetical protein (NCBI) compare b0440 hupB +0.3 1.9 HU, DNA-binding transcriptional regulator, beta subunit (NCBI) compare b1632 rsxE +0.3 2.5 NADH-ubiquinone oxidoreductase (NCBI) compare b1484 ddpD +0.3 1.7 D-ala-D-ala transporter subunit (NCBI) compare b2659 b2659 +0.3 1.3 orf, hypothetical protein (VIMSS) compare b0931 pncB +0.3 1.9 nicotinate phosphoribosyltransferase (NCBI) compare b4653 yicT +0.3 1.0 no description compare b1465 narV +0.3 1.2 nitrate reductase 2 (NRZ), gamma subunit (NCBI) compare b4551 yheV +0.3 1.3 hypothetical protein (NCBI) compare b4232 fbp +0.3 2.7 fructose-1,6-bisphosphatase (NCBI) compare b0560 nohB +0.3 1.0 DLP12 prophage; DNA packaging protein (NCBI) compare b4413 sokC +0.3 0.8 regulatory antisense RNA (NCBI) compare b1824 yobF +0.3 1.1 hypothetical protein (NCBI) compare b3190 yrbA +0.3 2.2 orf, hypothetical protein (VIMSS) compare b2272 yfbM +0.3 1.4 hypothetical protein (NCBI) compare b1222 narX +0.3 2.0 sensory histidine kinase in two-component regulatory system with NarL (NCBI) compare b4457 csrC +0.3 1.4 regulatory RNA (NCBI) compare b1639 ydhA +0.3 1.2 orf, hypothetical protein (VIMSS) compare b2343 b2343 +0.3 1.0 orf, hypothetical protein (VIMSS) compare b1814 sdaA +0.3 1.3 L-serine deaminase I (NCBI) compare b1804 rnd +0.3 1.8 ribonuclease D (NCBI) compare b4552 yrhC +0.3 0.4 no description compare b2481 hyfA +0.3 2.0 hydrogenase 4 Fe-S subunit (VIMSS) compare b1684 sufA +0.3 0.8 iron-sulfur cluster assembly scaffold protein (NCBI) compare b1095 fabF +0.3 2.5 3-oxoacyl-(acyl carrier protein) synthase (NCBI) compare b1344 ydaO +0.3 1.7 predicted C32 tRNA thiolase (NCBI) compare b2377 yfdY +0.3 1.4 predicted inner membrane protein (NCBI) compare b0965 b0965 +0.3 1.2 orf, hypothetical protein (VIMSS) compare b1988 nac +0.3 1.9 DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) compare b4144 yjeI +0.3 2.0 orf, hypothetical protein (VIMSS) compare b1220 ychO +0.3 1.6 predicted invasin (RefSeq) compare b0190 yaeQ +0.3 1.9 hypothetical protein (NCBI) compare b3627 rfaI +0.3 2.5 UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) compare b3574 yiaJ +0.3 1.8 predicted DNA-binding transcriptional repressor (NCBI) compare b1138 ymfE +0.3 0.8 e14 prophage; predicted inner membrane protein (NCBI) compare b0982 yccY +0.3 1.7 putative phosphatase (VIMSS) compare b1560 ydfU +0.3 1.2 Qin prophage; predicted protein (RefSeq) compare b2792 yqcC +0.3 1.5 hypothetical protein (NCBI) compare b2237 inaA +0.3 1.2 hypothetical protein (NCBI) compare b4373 rimI +0.3 1.1 ribosomal-protein-alanine N-acetyltransferase (NCBI) compare b3443 yrhA +0.3 0.7 orf, hypothetical protein (VIMSS) compare b2911 ssrS +0.3 0.9 6S regulatory RNA (NCBI) compare b1419 ydcA +0.3 1.8 hypothetical protein (NCBI) compare b0134 panB +0.3 1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) compare b1350 recE +0.3 2.3 Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) compare b2700 ygaD +0.3 1.2 competence damage-inducible protein A (NCBI) compare b1295 ymjA +0.3 0.8 hypothetical protein (NCBI) compare b2993 hybD +0.3 1.8 predicted maturation element for hydrogenase 2 (NCBI) compare b1487 ddpA +0.3 1.0 D-ala-D-a la transporter subunit (NCBI) compare b2895 fldB +0.3 1.3 flavodoxin 2 (NCBI) compare b3834 yigP +0.3 1.8 hypothetical protein (NCBI) compare b3234 degQ +0.3 2.5 serine endoprotease, periplasmic (NCBI) compare b2105 yohL +0.3 1.5 hypothetical protein (NCBI) compare b2570 rseC +0.3 1.7 RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) compare b0435 bolA +0.3 1.7 possible regulator of murein genes (VIMSS) compare b2638 yfjU +0.3 1.9 CP4-57 prophage; conserved protein (RefSeq) compare b3857 mobA +0.3 1.7 molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI) compare b1939 fliG +0.3 1.0 flagellar motor switch protein G (NCBI) compare b2450 yffS +0.3 0.8 CPZ-55 prophage; predicted protein (RefSeq) compare b3271 yhdZ +0.3 1.8 predicted amino-acid transporter subunit (NCBI) compare b2181 yejG +0.3 1.2 hypothetical protein (NCBI) compare b0530 sfmA +0.3 1.2 putative fimbrial-like protein (VIMSS) compare b2905 gcvT +0.3 1.9 glycine cleavage system aminomethyltransferase T (NCBI) compare b2061 wzb +0.3 0.9 protein-tyrosine phosphatase (NCBI) compare b1731 cedA +0.3 1.1 cell division modulator (RefSeq) compare b1132 hflD +0.3 1.6 hypothetical protein (NCBI) compare b1395 paaH +0.3 1.9 3-hydroxybutyryl-CoA dehydrogenase (NCBI) compare b4057 yjbR +0.3 1.9 hypothetical protein (NCBI) compare b1842 holE +0.3 0.8 DNA polymerase III, theta subunit (NCBI) compare b1958 yedI +0.3 1.6 conserved inner membrane protein (NCBI) compare b1837 yebW +0.3 1.0 orf, hypothetical protein (VIMSS) compare b1231 tyrT +0.3 0.4 tRNA-Tyr (NCBI) compare b1951 rcsA +0.3 0.5 DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) compare b3260 dusB +0.3 1.0 tRNA-dihydrouridine synthase B (NCBI) compare b1542 ydfI +0.3 1.0 predicted mannonate dehydrogenase (NCBI) compare b3926 glpK +0.3 2.4 glycerol kinase (NCBI) compare b1333 uspE +0.3 1.4 stress-induced protein (NCBI) compare b1777 b1777 +0.3 1.1 orf, hypothetical protein (VIMSS) compare b1567 intK +0.3 0.6 Qin prophage; predicted protein (RefSeq) compare b0009 mog +0.3 1.8 molybdenum cofactor biosynthesis protein (NCBI) compare b3484 yhhI +0.3 1.2 predicted transposase (NCBI) compare b4416 rybA +0.3 0.7 unknown RNA (NCBI) compare b0960 b0960 +0.3 2.2 orf, hypothetical protein (VIMSS) compare b2171 yeiP +0.3 1.6 putative elongation factor (VIMSS) compare b1752 ydjZ +0.3 0.6 conserved inner membrane protein (NCBI) compare b2141 yohJ +0.3 1.0 hypothetical protein (NCBI) compare b2867 xdhB +0.3 1.6 xanthine dehydrogenase, FAD-binding subunit (NCBI) compare b3563 yiaB +0.3 1.4 orf, hypothetical protein (VIMSS) compare b0318 yahD +0.3 1.7 predicted transcriptional regulator with ankyrin domain (NCBI) compare b1004 wrbA +0.3 1.6 TrpR binding protein WrbA (NCBI) compare b0782 moaB +0.3 0.9 molybdopterin biosynthesis protein B (NCBI) compare b2629 yfjM +0.3 1.9 CP4-57 prophage; predicted protein (NCBI) compare b1227 narI +0.3 1.3 nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) compare b1989 asnV +0.3 1.0 tRNA-Asn (NCBI) compare b0327 yahM +0.3 1.9 orf, hypothetical protein (VIMSS) compare b2749 ygbE +0.3 1.4 conserved inner membrane protein (NCBI) compare b1868 yecE +0.3 1.1 hypothetical protein (NCBI) compare b0852 rimK +0.3 1.6 ribosomal protein S6 modification protein (NCBI) compare b1802 yeaW +0.3 1.5 predicted 2Fe-2S cluster-containing protein (NCBI) compare b3644 yicC +0.3 1.2 hypothetical protein (NCBI) compare b2637 yfjT +0.2 0.6 CP4-57 prophage; predicted protein (NCBI) compare