Experiment set26IT013 for Pseudomonas putida KT2440

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.8 -4.0 Glutamate 5-kinase compare
PP_3098 -5.6 -1.3 conserved protein of unknown function compare
PP_0856 -5.1 -8.3 conserved lipoprotein of unknown function compare
PP_2403 -4.8 -1.6 Chemotaxis protein CheY compare
PP_1654 -4.4 -3.0 cysteine synthase B compare
PP_5216 -4.2 -2.6 exopolyphosphatase compare
PP_4265 -4.2 -2.9 DNA-binding transcriptional dual regulator compare
PP_4693 -3.8 -7.6 RNA polymerase-binding transcription factor DksA compare
PP_5054 -3.5 -3.6 glutaredoxin 3 compare
PP_4999 -3.5 -1.9 dihydroorotase-like protein compare
PP_1656 -3.4 -8.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0422 -3.3 -3.6 Indole-3-glycerol phosphate synthase compare
PP_0083 -3.2 -6.0 tryptophan synthase beta chain compare
PP_0292 -3.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3241 -3.0 -1.2 conserved exported protein of unknown function compare
PP_1589 -2.9 -7.0 uridylyltransferase compare
PP_0048 -2.9 -1.5 conserved protein of unknown function compare
PP_5048 -2.8 -3.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5128 -2.7 -5.2 Dihydroxy-acid dehydratase compare
PP_2087 -2.7 -2.6 CmpX protein compare
PP_0293 -2.7 -1.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4058 -2.7 -7.8 1,4-alpha-glucan branching enzyme compare
PP_1664 -2.7 -3.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_2093 -2.6 -6.7 NasT conserved
PP_4723 -2.6 -7.4 Carbamoyl-phosphate synthase large chain compare
PP_2328 -2.6 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_4679 -2.5 -3.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -2.5 -4.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2327 -2.5 -3.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0406 -2.5 -2.7 Nucleotidyltransferase family protein compare
PP_5198 -2.4 -2.8 conserved protein of unknown function compare
PP_0966 -2.4 -6.0 Histidinol dehydrogenase compare
PP_5014 -2.4 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1705 -2.4 -5.4 nitrite reductase [NAD(P)H] large subunit conserved
PP_1002 -2.4 -5.0 arginine/ornithine antiporter compare
PP_1468 -2.3 -3.8 Tyrosine recombinase XerD compare
PP_2168 -2.3 -5.5 Transaldolase compare
PP_1985 -2.3 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_4678 -2.3 -7.2 Ketol-acid reductoisomerase compare
PP_5097 -2.2 -6.3 homoserine O-acetyltransferase compare
PP_5571 -2.2 -1.4 conserved protein of unknown function compare
PP_1079 -2.2 -3.7 Ornithine carbamoyltransferase compare
PP_5047 -2.2 -2.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2371 -2.2 -3.0 Sulphite reductase hemoprotein, beta subunit compare
PP_2433 -2.2 -2.6 conserved protein of unknown function compare
PP_1706 -2.2 -2.4 Nitrite reductase compare
PP_5310 -2.2 -4.9 junction-specific ATP-dependent DNA helicase compare
PP_3999 -2.2 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3248 -2.2 -3.8 Dyp-type peroxidase family protein compare
PP_4680 -2.2 -7.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0236 -2.1 -1.6 NAD(P)H-dependent FMN reductase subunit compare
PP_0377 -2.1 -1.4 coenzyme PQQ synthesis protein D compare
PP_0417 -2.1 -7.4 Anthranilate synthase component 1 compare
PP_1088 -2.1 -6.0 Argininosuccinate synthase compare
PP_1000 -2.1 -3.8 ornithine carbamoyltransferase, catabolic compare
PP_2999 -2.0 -1.5 Glyoxalase family protein compare
PP_4804 -2.0 -2.3 RlpA-like lipoprotein compare
PP_1986 -2.0 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_0420 -2.0 -5.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0834 -2.0 -2.1 Sec translocation complex subunit YajC compare
PP_5347 -2.0 -5.2 pyruvate carboxylase subunit A compare
PP_3511 -1.9 -3.9 Branched-chain-amino-acid aminotransferase compare
PP_4700 -1.9 -2.7 pantothenate synthetase compare
PP_1237 -1.9 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4880 -1.9 -6.9 exoribonuclease R compare
PP_4799 -1.9 -2.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4724 -1.9 -3.2 Carbamoyl-phosphate synthase small chain compare
PP_5289 -1.9 -2.1 Acetylglutamate kinase compare
PP_1783 -1.8 -2.1 dTDP-glucose pyrophosphorylase compare
PP_0673 -1.8 -1.6 conserved protein of unknown function compare
PP_5075 -1.8 -5.7 glutamate synthase (NADPH) beta subunit compare
PP_5098 -1.8 -3.4 methionine biosynthesis protein MetW compare
PP_0261 -1.8 -3.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5295 -1.8 -1.6 conserved protein of unknown function compare
PP_3971 -1.8 -0.9 conserved protein of unknown function compare
PP_0846 -1.8 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_1110 -1.8 -1.5 serine acetyltransferase compare
PP_1733 -1.7 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0290 -1.7 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2070 -1.7 -1.6 Transcriptional regulator, AraC family compare
PP_1553 -1.7 -1.1 conserved protein of unknown function compare
PP_1493 -1.7 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0232 -1.7 -1.4 ATP-binding taurine transporter subunit compare
PP_4560 -1.7 -4.5 putative Ribonuclease BN compare
PP_2025 -1.7 -4.4 Exonuclease SbcD compare
PP_5652 -1.7 -1.8 conserved protein of unknown function, phage origin compare
PP_0833 -1.6 -1.8 queuine tRNA-ribosyltransferase compare
PP_1022 -1.6 -2.7 glucose 6-phosphate-1-dehydrogenase compare
PP_5557 -1.6 -1.7 protein of unknown function compare
PP_0967 -1.6 -4.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0421 -1.6 -4.1 Anthranilate phosphoribosyltransferase compare
PP_3312 -1.6 -1.6 putative Heat shock protein compare
PP_4130 -1.6 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0872 -1.6 -3.9 Peptide chain release factor 3 compare
PP_3662 -1.6 -4.2 conserved protein of unknown function compare
PP_1216 -1.6 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2302 -1.6 -3.3 DNA-binding, ATP-dependent protease compare
PP_0164 -1.6 -3.4 conserved protein of unknown function compare
PP_3551 -1.6 -1.5 DNA-binding response regulator, LuxR family compare
PP_4895 -1.6 -2.3 tRNA dimethylallyltransferase compare
PP_0965 -1.5 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0949 -1.5 -3.9 putative ATP-binding protein UPF0042 compare
PP_2898 -1.5 -2.4 conserved exported protein of unknown function compare
PP_2441 -1.5 -0.8 conserved protein of unknown function compare
PP_2313 -1.5 -1.3 conserved membrane protein of unknown function compare
PP_4909 -1.5 -3.0 phosphoserine phosphatase compare
PP_5313 -1.5 -1.0 DNA-binding protein HU-alpha compare
PP_4696 -1.5 -2.9 Nitrogen regulation protein NR(I) compare
PP_5508 -1.4 -1.0 conserved protein of unknown function compare
PP_2001 -1.4 -4.8 O-succinylhomoserine sulfhydrylase compare
PP_0218 -1.4 -4.1 Sensory box protein compare
PP_5346 -1.4 -3.3 pyruvate carboxylase subunit B compare
PP_2370 -1.4 -1.4 conserved protein of unknown function compare
PP_5007 -1.4 -1.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5015 -1.4 -1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3064 -1.4 -2.7 Phage tail protein compare
PP_4008 -1.4 -3.2 ATP-dependent serine protease compare
PP_0339 -1.4 -3.1 Pyruvate dehydrogenase E1 component compare
PP_1366 -1.4 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1554 -1.4 -2.3 conserved protein of unknown function compare
PP_5628 -1.4 -2.0 conserved protein of unknown function compare
PP_3840 -1.3 -1.0 conserved protein of unknown function compare
PP_5233 -1.3 -4.3 ammonium transporter AmtB compare
PP_2655 -1.3 -2.1 conserved protein of unknown function compare
PP_0789 -1.3 -2.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0683 -1.3 -2.5 conserved protein of unknown function compare
PP_1995 -1.3 -3.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2031 -1.3 -1.7 conserved protein of unknown function compare
PP_1552 -1.3 -1.8 putative Phage replication protein compare
PP_5227 -1.3 -4.0 diaminopimelate decarboxylase compare
PP_1629 -1.3 -4.3 Protein RecA compare
PP_1655 -1.3 -3.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1017 -1.3 -2.8 mannose/glucose ABC transporter, permease protein compare
PP_1988 -1.3 -3.3 3-isopropylmalate dehydrogenase compare
PP_4902 -1.3 -1.2 Oligoribonuclease compare
PP_0405 -1.3 -4.2 conserved protein of unknown function compare
PP_2462 -1.3 -1.7 conserved protein of unknown function compare
PP_3065 -1.2 -3.9 Pyocin R2_PP, tail formation compare
PP_5076 -1.2 -6.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_t29 -1.2 -1.5 tRNA-Ala compare
PP_4720 -1.2 -1.1 putative RNA binding protein compare
PP_5639 -1.2 -4.0 conserved exported protein of unknown function compare
PP_0276 -1.2 -0.9 Transcriptional regulator, Cro/CI family compare
PP_1097 -1.2 -1.1 Methionine--tRNA ligase compare
PP_0962 -1.2 -1.5 toluene-tolerance protein compare
PP_2998 -1.2 -4.7 2-dehydropantoate 2-reductase compare
PP_3089 -1.2 -1.8 conserved protein of unknown function compare
PP_4204 -1.2 -1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1025 -1.2 -4.4 2-isopropylmalate synthase compare
PP_4054 -1.2 -1.3 conserved protein of unknown function compare
PP_2092 -1.1 -3.4 Nitrate transporter compare
PP_5537 -1.1 -1.4 conserved membrane protein of unknown function compare
PP_1633 -1.1 -1.4 conserved exported protein of unknown function compare
PP_4787 -1.1 -0.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0123 -1.1 -3.8 DNA polymerase I, 5 compare
PP_1353 -1.1 -1.3 conserved membrane protein of unknown function compare
PP_1328 -1.1 -1.4 Protein MraZ compare
PP_1876 -1.1 -1.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5217 -1.1 -4.1 Polyphosphate kinase compare
PP_0585 -1.1 -1.3 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0291 -1.1 -1.9 conserved protein of unknown function compare
PP_3245 -1.1 -0.9 conserved protein of unknown function compare
PP_2646 -1.1 -2.9 conserved protein of unknown function compare
PP_3938 -1.1 -1.2 conserved protein of unknown function compare
PP_5441 -1.1 -1.6 protein of unknown function compare
PP_1208 -1.1 -1.4 conserved protein of unknown function, SlyX family compare
PP_0855 -1.1 -1.3 conserved protein of unknown function compare
PP_0306 -1.1 -1.7 conserved protein of unknown function compare
PP_5139 -1.1 -2.0 cadmium translocating P-type ATPase compare
PP_5499 -1.1 -1.9 conserved protein of unknown function compare
PP_5309 -1.1 -3.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5202 -1.1 -1.7 putative cell division protein compare
PP_2337 -1.1 -1.6 aconitate isomerase compare
PP_0289 -1.0 -2.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0888 -1.0 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_3017 -1.0 -2.5 O6-methylguanine-DNA methyltransferase compare
PP_5617 -1.0 -2.9 conserved protein of unknown function compare
PP_3407 -1.0 -2.9 conserved protein of unknown function compare
PP_4262 -1.0 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5247 -1.0 -1.7 conserved protein of unknown function compare
PP_2341 -1.0 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4223 -1.0 -1.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4989 -1.0 -1.5 Protein PilJ compare
PP_3035 -1.0 -1.3 conserved protein of unknown function compare
PP_0094 -1.0 -1.9 5'-nucleotidase compare
PP_0082 -1.0 -2.6 tryptophan synthase alpha chain compare
PP_4890 -1.0 -1.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_3314 -1.0 -1.4 Heat shock protein, HSP20 family compare
PP_3447 -1.0 -0.8 conserved membrane protein of unknown function compare
PP_5348 -1.0 -3.1 Transcriptional regulator, LysR family compare
PP_5270 -1.0 -2.3 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5507 -1.0 -1.8 protein of unknown function compare
PP_3648 -1.0 -2.2 Carboxymuconolactone decarboxylase family protein compare
PP_1176 -1.0 -0.9 conserved protein of unknown function compare
PP_1042 -1.0 -2.0 Type II secretion system protein K compare
PP_1702 -1.0 -1.6 Recombination-associated protein RdgC compare
PP_5350 -1.0 -1.5 Transcriptional regulator, RpiR family compare
PP_5491 -1.0 -1.8 conserved protein of unknown function with SEC-C motif domain compare
PP_1217 -1.0 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5140 -1.0 -1.0 Transcriptional regulator, MerR family compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas putida KT2440

For nitrogen source Sodium nitrite across organisms