Experiment set26IT012 for Pseudomonas putida KT2440

Compare to:

nitrogen source Sodium nitrite 1mM

200 most important genes:

  gene name fitness t score description  
PP_3098 -5.3 -1.3 conserved protein of unknown function compare
PP_5022 -4.9 -1.7 Glutamine transport ATP-binding protein GlnQ compare
PP_0856 -4.7 -7.5 conserved lipoprotein of unknown function compare
PP_1528 -4.6 -1.6 conserved protein of unknown function compare
PP_t12 -4.4 -1.1 tRNA-Thr compare
PP_3926 -4.3 -1.5 short-chain dehydrogenase compare
PP_4561 -4.2 -1.0 stress response protein compare
PP_2371 -3.9 -7.4 Sulphite reductase hemoprotein, beta subunit compare
PP_1654 -3.7 -4.8 cysteine synthase B compare
PP_4890 -3.2 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4693 -3.2 -6.0 RNA polymerase-binding transcription factor DksA compare
PP_1568 -3.2 -1.4 conserved protein of unknown function compare
PP_1353 -3.2 -4.1 conserved membrane protein of unknown function compare
PP_4799 -3.1 -5.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4126 -3.0 -2.5 NADH-quinone oxidoreductase subunit I compare
PP_0691 -3.0 -3.5 Glutamate 5-kinase compare
PP_1656 -3.0 -7.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_5114 -2.9 -1.8 putative adenine methyltransferase compare
PP_1705 -2.8 -6.6 nitrite reductase [NAD(P)H] large subunit conserved
PP_0833 -2.8 -1.9 queuine tRNA-ribosyltransferase compare
PP_0980 -2.8 -5.4 Probable cytosol aminopeptidase compare
PP_1589 -2.7 -6.5 uridylyltransferase compare
PP_2402 -2.7 -2.8 putative Sensor histidine kinase compare
PP_5048 -2.7 -3.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1826 -2.7 -3.4 Hydrolase, isochorismatase family compare
PP_2121 -2.6 -2.4 putative Lipoprotein compare
PP_0406 -2.6 -2.9 Nucleotidyltransferase family protein compare
PP_0164 -2.5 -5.0 conserved protein of unknown function compare
PP_5098 -2.5 -4.1 methionine biosynthesis protein MetW compare
PP_5097 -2.5 -6.7 homoserine O-acetyltransferase compare
PP_4265 -2.5 -2.8 DNA-binding transcriptional dual regulator compare
PP_5295 -2.5 -1.8 conserved protein of unknown function compare
PP_2093 -2.4 -5.1 NasT conserved
PP_2001 -2.4 -5.7 O-succinylhomoserine sulfhydrylase compare
PP_3447 -2.4 -1.1 conserved membrane protein of unknown function compare
PP_1985 -2.4 -3.0 3-isopropylmalate dehydratase large subunit compare
PP_1988 -2.3 -4.3 3-isopropylmalate dehydrogenase compare
PP_5128 -2.3 -4.6 Dihydroxy-acid dehydratase compare
PP_2309 -2.3 -1.2 conserved protein of unknown function compare
PP_0048 -2.2 -1.3 conserved protein of unknown function compare
PP_5047 -2.2 -4.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0966 -2.2 -5.6 Histidinol dehydrogenase compare
PP_2414 -2.2 -1.8 conserved exported protein of unknown function compare
PP_0949 -2.1 -3.9 putative ATP-binding protein UPF0042 compare
PP_5359 -2.1 -1.7 CobW/P47K family protein compare
PP_4925 -2.1 -3.2 conserved protein of unknown function compare
PP_4129 -2.1 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2327 -2.1 -3.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -2.1 -8.0 Anthranilate synthase component 1 compare
PP_2168 -2.1 -4.9 Transaldolase compare
PP_3880 -2.1 -1.4 conserved exported protein of unknown function compare
PP_0888 -2.1 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_2088 -2.0 -2.5 RNA polymerase sigma factor SigX compare
PP_1845 -2.0 -2.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_0401 -2.0 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4723 -2.0 -6.4 Carbamoyl-phosphate synthase large chain compare
PP_3662 -2.0 -4.4 conserved protein of unknown function compare
PP_3999 -2.0 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -1.9 -3.2 Nitrogen regulation protein NR(I) compare
PP_4130 -1.9 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4058 -1.9 -5.4 1,4-alpha-glucan branching enzyme compare
PP_4700 -1.9 -2.5 pantothenate synthetase compare
PP_4680 -1.9 -6.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4797 -1.9 -1.8 conserved protein of unknown function compare
PP_2302 -1.9 -4.3 DNA-binding, ATP-dependent protease compare
PP_3967 -1.9 -2.9 MutT/nudix family protein compare
PP_1310 -1.9 -1.5 conserved hypothetical protein compare
PP_4196 -1.9 -2.0 conserved exported protein of unknown function compare
PP_0290 -1.9 -3.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5027 -1.9 -1.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1008 -1.8 -1.8 RNA polymerase subunit sigma-24 compare
PP_5528 -1.8 -0.9 conserved protein of unknown function compare
PP_5423 -1.8 -1.0 conserved membrane protein of unknown function compare
PP_5075 -1.8 -6.2 glutamate synthase (NADPH) beta subunit compare
PP_2337 -1.8 -1.8 aconitate isomerase compare
PP_0965 -1.8 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4560 -1.8 -4.2 putative Ribonuclease BN compare
PP_3640 -1.8 -1.6 Transcriptional regulator, AraC family compare
PP_2793 -1.8 -1.5 Acyl-CoA dehydrogenase family protein compare
PP_2000 -1.8 -1.2 amidophosphoribosyl transferase compare
PP_0719 -1.8 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4828 -1.7 -1.3 Precorrin-8X methylmutase compare
PP_5095 -1.7 -1.4 pyrroline-5-carboxylate reductase compare
PP_0420 -1.7 -5.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0855 -1.7 -1.3 conserved protein of unknown function compare
PP_0846 -1.7 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_5495 -1.7 -1.7 protein of unknown function compare
PP_0292 -1.7 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0273 -1.7 -1.9 conserved protein of unknown function compare
PP_2328 -1.7 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_4471 -1.7 -2.8 Magnesium transporter compare
PP_4591 -1.7 -2.4 Ribonuclease D compare
PP_0127 -1.7 -2.3 Thiol:disulfide interchange protein compare
PP_0339 -1.7 -3.8 Pyruvate dehydrogenase E1 component compare
PP_0967 -1.7 -3.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5014 -1.7 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4678 -1.6 -6.5 Ketol-acid reductoisomerase compare
PP_0082 -1.6 -2.9 tryptophan synthase alpha chain compare
PP_5701 -1.6 -1.4 conserved protein of unknown function compare
PP_5289 -1.6 -2.4 Acetylglutamate kinase compare
PP_1022 -1.6 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1366 -1.6 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0291 -1.6 -3.1 conserved protein of unknown function compare
PP_5499 -1.6 -1.9 conserved protein of unknown function compare
PP_4213 -1.6 -2.0 putative dipeptidase compare
PP_5639 -1.6 -4.4 conserved exported protein of unknown function compare
PP_5216 -1.6 -1.8 exopolyphosphatase compare
PP_3511 -1.6 -4.4 Branched-chain-amino-acid aminotransferase compare
PP_0999 -1.5 -1.7 carbamate kinase compare
PP_0910 -1.5 -3.0 conserved exported protein of unknown function compare
PP_1062 -1.5 -1.5 MutT/nudix family protein compare
PP_5350 -1.5 -3.0 Transcriptional regulator, RpiR family compare
PP_1629 -1.5 -3.7 Protein RecA compare
PP_3417 -1.5 -2.5 D-gluconate transporter compare
PP_0184 -1.5 -3.3 Argininosuccinate lyase compare
PP_4555 -1.5 -1.9 conserved protein of unknown function compare
PP_0123 -1.5 -4.8 DNA polymerase I, 5 compare
PP_1764 -1.5 -1.9 Phosphoglycolate phosphatase 2 compare
PP_0380 -1.5 -2.4 Coenzyme PQQ synthesis protein A compare
PP_3248 -1.5 -2.6 Dyp-type peroxidase family protein compare
PP_0001 -1.5 -1.7 probable chromosome-partitioning protein compare
PP_0640 -1.5 -1.5 conserved protein of unknown function compare
PP_0218 -1.5 -4.1 Sensory box protein compare
PP_1011 -1.5 -4.4 glucokinase compare
PP_2087 -1.5 -2.4 CmpX protein compare
PP_0289 -1.5 -3.1 Imidazoleglycerol-phosphate dehydratase compare
PP_3332 -1.5 -2.3 putative cytochrome c-type protein compare
PP_0834 -1.5 -0.8 Sec translocation complex subunit YajC compare
PP_5156 -1.5 -1.3 conserved exported protein of unknown function compare
PP_5346 -1.5 -3.3 pyruvate carboxylase subunit B compare
PP_5076 -1.4 -6.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_5309 -1.4 -3.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1001 -1.4 -2.4 arginine deiminase compare
PP_2349 -1.4 -3.6 nitrite transporter, HPP family (from data) compare
PP_3924 -1.4 -1.3 conserved protein of unknown function compare
PP_1237 -1.4 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2581 -1.3 -1.1 conserved protein of unknown function compare
PP_3179 -1.3 -3.6 Transcriptional regulator, LysR family compare
PP_2341 -1.3 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0025 -1.3 -0.8 hypothetical protein compare
PP_4909 -1.3 -2.8 phosphoserine phosphatase compare
PP_0703 -1.3 -2.4 putative Transmembrane sensor compare
PP_0957 -1.3 -0.8 D-arabinose 5-phosphate isomerase compare
PP_0250 -1.3 -1.5 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4131 -1.3 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_0760 -1.3 -3.1 conserved membrane protein of unknown function compare
PP_4837 -1.3 -2.7 conserved protein of unknown function compare
PP_3919 -1.3 -1.5 conserved protein of unknown function compare
PP_5393 -1.3 -1.0 putative metal-binding chaperone compare
PP_4679 -1.3 -2.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4286 -1.2 -3.4 allantoinase compare
PP_5347 -1.2 -3.5 pyruvate carboxylase subunit A compare
PP_1435 -1.2 -1.9 DNA repair protein RecO compare
PP_4848 -1.2 -2.2 Curved DNA-binding protein compare
PP_4482 -1.2 -1.5 Transcriptional regulator, AraC family compare
PP_3591 -1.2 -2.7 Delta 1-piperideine-2-carboxylate reductase compare
PP_1655 -1.2 -3.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5552 -1.2 -1.6 conserved protein of unknown function compare
PP_5185 -1.2 -1.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2572 -1.2 -2.0 conserved protein of unknown function compare
PP_2433 -1.2 -1.4 conserved protein of unknown function compare
PP_3241 -1.2 -0.7 conserved exported protein of unknown function compare
PP_4214 -1.2 -3.1 pyoverdine biosynthesis related protein compare
PP_2716 -1.2 -2.6 arsenate reductase compare
PP_2857 -1.2 -1.0 conserved exported protein of unknown function compare
PP_1756 -1.2 -4.2 conserved exported protein of unknown function compare
PP_2873 -1.2 -2.1 conserved protein of unknown function, UPF0145 family compare
PP_4724 -1.2 -1.6 Carbamoyl-phosphate synthase small chain compare
PP_4199 -1.2 -0.8 putative Lipoprotein compare
PP_1468 -1.2 -2.1 Tyrosine recombinase XerD compare
PP_4139 -1.2 -1.9 conserved protein of unknown function compare
PP_0393 -1.2 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3064 -1.1 -1.2 Phage tail protein compare
PP_1088 -1.1 -3.8 Argininosuccinate synthase compare
PP_1729 -1.1 -0.9 conserved protein of unknown function compare
PP_0378 -1.1 -3.3 Pyrroloquinoline-quinone synthase compare
PP_2140 -1.1 -2.1 conserved protein of unknown function compare
PP_1731 -1.1 -2.8 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4953 -1.1 -1.8 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_2031 -1.1 -1.1 conserved protein of unknown function compare
PP_5223 -1.1 -2.3 regulator of nucleotide diphosphokinase compare
PP_3726 -1.1 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_5519 -1.1 -1.1 conserved protein of unknown function of phage origin compare
PP_0653 -1.1 -0.9 conserved protein of unknown function compare
PP_3185 -1.1 -1.4 Pet18 protein compare
PP_4895 -1.1 -1.9 tRNA dimethylallyltransferase compare
PP_3407 -1.1 -1.0 conserved protein of unknown function compare
PP_5000 -1.1 -0.9 peptidase component of the ATP-dependent HslVU protease compare
PP_1739 -1.1 -1.6 conserved membrane protein of unknown function compare
PP_1079 -1.1 -2.5 Ornithine carbamoyltransferase compare
PP_2668 -1.1 -1.1 ABC efflux transporter, ATP-binding protein compare
PP_1002 -1.1 -2.8 arginine/ornithine antiporter compare
PP_2958 -1.1 -1.7 Glutaredoxin compare
PP_3232 -1.1 -2.4 Acetyltransferase, GNAT family compare
PP_4419 -1.1 -1.3 transposase compare
PP_4073 -1.1 -1.1 conserved exported protein of unknown function compare
PP_1138 -1.1 -3.1 branched chain amino acid transporter - ATP binding subunit compare
PP_2723 -1.1 -2.0 Uncharacterized oxidoreductase YhdF compare
PP_0152 -1.1 -0.8 conserved exported protein of unknown function compare
PP_1986 -1.1 -1.9 3-isopropylmalate dehydratase small subunit compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas putida KT2440

For nitrogen source Sodium nitrite across organisms