Experiment set26IT009 for Pseudomonas putida KT2440

Compare to:

nitrogen source Ammonium chloride 20mM

200 most important genes:

  gene name fitness t score description  
PP_1986 -6.5 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_1988 -6.2 -11.1 3-isopropylmalate dehydrogenase compare
PP_5014 -6.1 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0292 -5.6 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1995 -5.5 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0290 -5.3 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -5.3 -15.5 Ketol-acid reductoisomerase compare
PP_0856 -5.2 -9.0 conserved lipoprotein of unknown function compare
PP_4799 -5.1 -3.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0184 -5.0 -9.9 Argininosuccinate lyase compare
PP_0082 -4.9 -8.3 tryptophan synthase alpha chain compare
PP_3999 -4.9 -7.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4680 -4.8 -13.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -4.6 -6.8 Branched-chain-amino-acid aminotransferase compare
PP_5015 -4.6 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0083 -4.5 -7.3 tryptophan synthase beta chain compare
PP_0417 -4.5 -14.9 Anthranilate synthase component 1 compare
PP_2168 -4.4 -9.9 Transaldolase compare
PP_t12 -4.4 -1.3 tRNA-Thr compare
PP_5098 -4.4 -8.2 methionine biosynthesis protein MetW compare
PP_5347 -4.4 -11.6 pyruvate carboxylase subunit A compare
PP_5128 -4.3 -7.0 Dihydroxy-acid dehydratase compare
PP_0967 -4.3 -8.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -4.2 -4.7 Ornithine carbamoyltransferase compare
PP_1088 -4.1 -10.3 Argininosuccinate synthase compare
PP_0691 -4.1 -5.4 Glutamate 5-kinase compare
PP_0289 -4.1 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0420 -4.0 -8.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4126 -4.0 -2.7 NADH-quinone oxidoreductase subunit I compare
PP_4679 -4.0 -5.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -4.0 -6.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2899 -3.9 -2.2 conserved exported protein of unknown function compare
PP_4265 -3.9 -2.7 DNA-binding transcriptional dual regulator compare
PP_5155 -3.9 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -3.9 -7.7 Nitrogen regulation protein NR(I) compare
PP_5095 -3.9 -2.2 pyrroline-5-carboxylate reductase compare
PP_4909 -3.9 -7.1 phosphoserine phosphatase compare
PP_5185 -3.7 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1022 -3.6 -7.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0966 -3.6 -6.5 Histidinol dehydrogenase compare
PP_1025 -3.5 -9.5 2-isopropylmalate synthase compare
PP_1985 -3.5 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_0422 -3.4 -4.5 Indole-3-glycerol phosphate synthase compare
PP_0421 -3.3 -5.3 Anthranilate phosphoribosyltransferase compare
PP_4999 -3.3 -2.1 dihydroorotase-like protein compare
PP_4890 -3.3 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -3.3 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0164 -3.2 -7.5 conserved protein of unknown function compare
PP_4874 -3.1 -2.4 50S ribosomal protein L9 compare
PP_2001 -3.1 -5.4 O-succinylhomoserine sulfhydrylase compare
PP_0293 -3.1 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4700 -3.1 -4.7 pantothenate synthetase compare
PP_5097 -3.0 -8.2 homoserine O-acetyltransferase compare
PP_2371 -3.0 -5.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1656 -3.0 -8.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_4693 -2.9 -5.9 RNA polymerase-binding transcription factor DksA compare
PP_0276 -2.8 -1.4 Transcriptional regulator, Cro/CI family compare
PP_5348 -2.6 -5.8 Transcriptional regulator, LysR family compare
PP_0393 -2.5 -3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0339 -2.5 -1.8 Pyruvate dehydrogenase E1 component compare
PP_4804 -2.5 -3.6 RlpA-like lipoprotein compare
PP_5114 -2.5 -3.5 putative adenine methyltransferase compare
PP_5227 -2.5 -6.5 diaminopimelate decarboxylase compare
PP_1654 -2.5 -3.7 cysteine synthase B compare
PP_1553 -2.5 -2.4 conserved protein of unknown function compare
PP_5310 -2.5 -5.5 junction-specific ATP-dependent DNA helicase compare
PP_4130 -2.4 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3248 -2.4 -2.8 Dyp-type peroxidase family protein compare
PP_3637 -2.4 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5350 -2.4 -5.0 Transcriptional regulator, RpiR family compare
PP_1994 -2.3 -3.6 tRNA pseudouridine (38-40)synthase compare
PP_0855 -2.3 -1.9 conserved protein of unknown function compare
PP_3417 -2.3 -4.7 D-gluconate transporter compare
PP_5346 -2.3 -4.8 pyruvate carboxylase subunit B compare
PP_4723 -2.2 -6.1 Carbamoyl-phosphate synthase large chain compare
PP_1381 -2.1 -1.3 4-carboxymuconolactone decarboxylase compare
PP_5289 -2.1 -3.3 Acetylglutamate kinase compare
PP_0949 -2.1 -4.8 putative ATP-binding protein UPF0042 compare
PP_3239 -2.0 -2.2 putative cointegrate resolution protein T Tn4652 compare
PP_1001 -2.0 -2.8 arginine deiminase compare
PP_3946 -2.0 -1.4 HTH-type transcriptional repressor NicR compare
PP_4129 -2.0 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1186 -2.0 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_3840 -1.9 -1.3 conserved protein of unknown function compare
PP_1783 -1.9 -2.7 dTDP-glucose pyrophosphorylase compare
PP_0760 -1.8 -2.4 conserved membrane protein of unknown function compare
PP_4560 -1.8 -5.2 putative Ribonuclease BN compare
PP_1002 -1.8 -3.9 arginine/ornithine antiporter compare
PP_3519 -1.8 -1.4 putative Lipoprotein compare
PP_1012 -1.7 -4.7 DNA-binding response regulator compare
PP_5303 -1.7 -3.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4964 -1.7 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_0291 -1.7 -2.8 conserved protein of unknown function compare
PP_3245 -1.7 -1.6 conserved protein of unknown function compare
PP_1733 -1.7 -3.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1664 -1.6 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1099 -1.6 -2.3 Cold shock protein CapB compare
PP_4917 -1.6 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2433 -1.5 -1.3 conserved protein of unknown function compare
PP_2336 -1.5 -3.5 aconitate hydratase 1 compare
PP_4724 -1.5 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_5706 -1.5 -1.7 Sec translocation complex - SecG subunit compare
PP_3662 -1.5 -3.9 conserved protein of unknown function compare
PP_0980 -1.5 -4.7 Probable cytosol aminopeptidase compare
PP_2681 -1.5 -1.3 coenzyme PQQ synthesis protein D compare
PP_1513 -1.5 -1.2 Ribosomal RNA small subunit methyltransferase J compare
PP_4121 -1.4 -3.4 NADH-quinone oxidoreductase subunit C/D compare
PP_1353 -1.4 -2.8 conserved membrane protein of unknown function compare
PP_2898 -1.4 -1.9 conserved exported protein of unknown function compare
PP_0123 -1.4 -5.6 DNA polymerase I, 5 compare
PP_4952 -1.4 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5048 -1.4 -3.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0960 -1.4 -2.9 phospholipid ABC transporter binding protein compare
PP_2668 -1.4 -2.4 ABC efflux transporter, ATP-binding protein compare
PP_5309 -1.4 -4.5 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4131 -1.4 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_4008 -1.4 -3.2 ATP-dependent serine protease compare
PP_3919 -1.4 -3.0 conserved protein of unknown function compare
PP_5628 -1.4 -2.2 conserved protein of unknown function compare
PP_1362 -1.4 -2.8 pyruvate kinase II compare
PP_1912 -1.3 -2.7 Phosphate acyltransferase compare
PP_0218 -1.3 -5.3 Sensory box protein compare
PP_4133 -1.3 -2.0 Transcriptional regulator-related protein compare
PP_4546 -1.3 -2.6 ATP-dependent helicase HrpA compare
PP_0957 -1.3 -1.8 D-arabinose 5-phosphate isomerase compare
PP_0566 -1.3 -1.0 translation-related factor compare
PP_1629 -1.3 -3.5 Protein RecA compare
PP_1076 -1.3 -3.4 aquaglyceroporin compare
PP_3790 -1.3 -4.4 diaminopimelate epimerase compare
PP_4094 -1.3 -1.5 conserved protein of unknown function compare
PP_5054 -1.3 -1.7 glutaredoxin 3 compare
PP_2414 -1.3 -1.9 conserved exported protein of unknown function compare
PP_1016 -1.2 -4.5 mannose/glucose ABC transporter, permease protein compare
PP_1015 -1.2 -3.5 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5639 -1.2 -4.5 conserved exported protein of unknown function compare
PP_4004 -1.2 -2.2 DNA translocase FtsK compare
PP_1679 -1.2 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5528 -1.2 -1.7 conserved protein of unknown function compare
PP_0150 -1.2 -2.1 conserved exported protein of unknown function compare
PP_4120 -1.2 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_5571 -1.2 -1.0 conserved protein of unknown function compare
PP_1528 -1.2 -1.4 conserved protein of unknown function compare
PP_5471 -1.2 -1.7 putative response regulator receiver protein compare
PP_1214 -1.1 -2.2 putative transcriptional regulatory protein compare
PP_5453 -1.1 -1.3 conserved protein of unknown function compare
PP_3065 -1.1 -3.1 Pyocin R2_PP, tail formation compare
PP_1128 -1.1 -2.5 OmpA family protein compare
PP_1187 -1.1 -3.1 sensor protein compare
PP_4124 -1.1 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_5045 -1.1 -1.9 tRNA sulfurtransferase compare
PP_1096 -1.1 -1.4 putative electron transport complex protein compare
PP_5216 -1.1 -1.2 exopolyphosphatase compare
PP_0238 -1.0 -3.2 alkanesulfonate monooxygenase conserved
PP_2337 -1.0 -1.6 aconitate isomerase compare
PP_2289 -1.0 -3.0 conserved exported protein of unknown function compare
PP_0379 -1.0 -3.0 Coenzyme PQQ synthesis protein B compare
PP_0260 -1.0 -3.9 ADP-sugar pyrophosphorylase compare
PP_4561 -1.0 -0.6 stress response protein compare
PP_0332 -1.0 -2.1 putative Acyltransferase compare
PP_1020 -1.0 -1.2 putative glucose-6-phosphate 1-epimerase compare
PP_2328 -1.0 -3.1 Phosphoadenosine phosphosulfate reductase compare
PP_0240 -1.0 -1.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_3672 -1.0 -1.8 conserved protein of unknown function compare
PP_5538 -1.0 -3.2 putative ABC transporter, substrate-binding protein compare
PP_2693 -1.0 -2.5 putative Dipeptidase compare
PP_2700 -0.9 -2.8 AhpC/TSA family protein compare
PP_1836 -0.9 -1.9 putative metal transporter, ZIP family compare
PP_1045 -0.9 -1.4 Type II secretion pathway protein XcpP compare
PP_5589 -0.9 -1.8 protein of unknown function containing Rhs repeat-associated core domain compare
PP_1017 -0.9 -3.4 mannose/glucose ABC transporter, permease protein compare
PP_2269 -0.9 -2.1 putative N-acetylmuramoyl-L-alanine amidase compare
PP_1473 -0.9 -2.3 conserved protein of unknown function compare
PP_5028 -0.9 -2.5 proline iminopeptidase compare
PP_4122 -0.9 -0.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3059 -0.9 -3.9 putative tail sheath protein compare
PP_1390 -0.9 -2.2 conserved exported protein of unknown function compare
PP_0874 -0.9 -1.2 conserved protein of unknown function compare
PP_5253 -0.9 -2.1 Arylesterase compare
PP_3384 -0.9 -2.0 gluconate 2-dehydrogenase gamma subunit compare
PP_3286 -0.9 -2.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1011 -0.9 -3.0 glucokinase compare
PP_3294 -0.9 -2.6 Universal stress protein family compare
PP_0585 -0.9 -1.4 putative metal-sensitive transcriptional regulator, MerR family compare
PP_1976 -0.9 -3.5 HlyD family secretion protein compare
PP_0575 -0.9 -2.2 conserved membrane protein of unknown function compare
PP_1013 -0.9 -2.7 Sensor histidine kinase compare
PP_3080 -0.9 -2.5 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2760 -0.9 -2.4 putative ribose transport permease protein compare
PP_1309 -0.8 -2.7 conserved exported protein of unknown function compare
PP_1552 -0.8 -2.6 putative Phage replication protein compare
PP_3098 -0.8 -0.7 conserved protein of unknown function compare
PP_3185 -0.8 -1.5 Pet18 protein compare
PP_1655 -0.8 -2.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3232 -0.8 -1.9 Acetyltransferase, GNAT family compare
PP_1824 -0.8 -0.8 Smr domain protein compare
PP_1176 -0.8 -0.6 conserved protein of unknown function compare
PP_0878 -0.8 -2.6 dipeptide ABC transporter, binding subunit compare
PP_2181 -0.8 -2.8 Transcriptional regulator, Cro/CI family compare
PP_0942 -0.8 -4.2 regulatory protease compare
PP_2462 -0.8 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms