Experiment set26IT008 for Pseudomonas putida KT2440

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most important genes:

  gene name fitness t score description  
PP_0856 -7.1 -4.9 conserved lipoprotein of unknown function compare
PP_4902 -5.6 -3.9 Oligoribonuclease compare
PP_0957 -4.9 -1.7 D-arabinose 5-phosphate isomerase compare
PP_0377 -4.7 -1.7 coenzyme PQQ synthesis protein D compare
PP_4828 -4.6 -1.6 Precorrin-8X methylmutase compare
PP_4700 -4.5 -3.1 pantothenate synthetase compare
PP_t12 -4.4 -1.1 tRNA-Thr compare
PP_1366 -4.4 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4329 -4.4 -3.1 FlhB domain protein compare
PP_4679 -4.2 -6.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -4.2 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1654 -4.2 -2.9 cysteine synthase B compare
PP_4265 -3.9 -2.7 DNA-binding transcriptional dual regulator compare
PP_0164 -3.7 -6.7 conserved protein of unknown function compare
PP_5015 -3.6 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5453 -3.6 -1.9 conserved protein of unknown function compare
PP_4136 -3.6 -1.3 Transcriptional regulator, LuxR family compare
PP_1269 -3.6 -1.6 Universal stress protein family compare
PP_0048 -3.5 -1.5 conserved protein of unknown function compare
PP_4693 -3.3 -6.5 RNA polymerase-binding transcription factor DksA compare
PP_4999 -3.3 -1.8 dihydroorotase-like protein compare
PP_2327 -3.3 -4.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1656 -3.3 -8.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_0082 -3.2 -4.5 tryptophan synthase alpha chain compare
PP_2088 -3.1 -2.1 RNA polymerase sigma factor SigX compare
PP_4799 -3.0 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2093 -2.9 -5.5 NasT conserved
PP_4560 -2.9 -6.8 putative Ribonuclease BN compare
PP_5128 -2.9 -5.2 Dihydroxy-acid dehydratase compare
PP_3999 -2.7 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4961 -2.6 -1.3 putative Lipoprotein compare
PP_4058 -2.6 -7.0 1,4-alpha-glucan branching enzyme compare
PP_5289 -2.5 -3.6 Acetylglutamate kinase compare
PP_5097 -2.5 -7.4 homoserine O-acetyltransferase compare
PP_2311 -2.5 -3.7 Mg-dependent cytoplasmic DNase / RNase compare
PP_0965 -2.5 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0292 -2.5 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1985 -2.4 -3.1 3-isopropylmalate dehydratase large subunit compare
PP_3511 -2.4 -3.9 Branched-chain-amino-acid aminotransferase compare
PP_1079 -2.3 -3.0 Ornithine carbamoyltransferase compare
PP_0874 -2.3 -2.1 conserved protein of unknown function compare
PP_1589 -2.3 -5.8 uridylyltransferase compare
PP_0289 -2.3 -3.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4723 -2.3 -7.2 Carbamoyl-phosphate synthase large chain compare
PP_2001 -2.3 -5.4 O-succinylhomoserine sulfhydrylase compare
PP_0422 -2.2 -3.6 Indole-3-glycerol phosphate synthase compare
PP_5014 -2.2 -1.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4098 -2.2 -1.8 UvrABC system protein C compare
PP_0691 -2.2 -2.1 Glutamate 5-kinase compare
PP_2168 -2.2 -5.6 Transaldolase compare
PP_5047 -2.2 -4.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3662 -2.2 -4.4 conserved protein of unknown function compare
PP_4678 -2.2 -7.1 Ketol-acid reductoisomerase compare
PP_0967 -2.1 -4.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2145 -2.1 -3.3 beta-N-acetylglucosaminidase compare
PP_3539 -2.1 -2.0 putative Transcriptional regulator compare
PP_5295 -2.1 -2.0 conserved protein of unknown function compare
PP_4680 -2.1 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3064 -2.1 -3.8 Phage tail protein compare
PP_0420 -2.0 -4.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1988 -2.0 -5.7 3-isopropylmalate dehydrogenase compare
PP_0123 -2.0 -6.2 DNA polymerase I, 5 compare
PP_3248 -2.0 -3.8 Dyp-type peroxidase family protein compare
PP_5486 -2.0 -1.6 conserved protein of unknown function compare
PP_0184 -2.0 -3.4 Argininosuccinate lyase compare
PP_2328 -2.0 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_0319 -2.0 -1.2 conserved protein of unknown function compare
PP_4724 -1.9 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_5090 -1.9 -2.0 putative cell division protein compare
PP_5110 -1.9 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2575 -1.8 -1.2 conserved exported protein of unknown function compare
PP_5075 -1.8 -5.8 glutamate synthase (NADPH) beta subunit compare
PP_0339 -1.8 -4.4 Pyruvate dehydrogenase E1 component compare
PP_0417 -1.8 -7.4 Anthranilate synthase component 1 compare
PP_1215 -1.8 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_1000 -1.7 -3.5 ornithine carbamoyltransferase, catabolic compare
PP_5027 -1.7 -1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5048 -1.7 -3.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1705 -1.7 -4.9 nitrite reductase [NAD(P)H] large subunit conserved
PP_1022 -1.7 -3.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1995 -1.7 -3.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2700 -1.7 -2.6 AhpC/TSA family protein compare
PP_4204 -1.7 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5347 -1.7 -4.9 pyruvate carboxylase subunit A compare
PP_1986 -1.7 -1.3 3-isopropylmalate dehydratase small subunit compare
PP_5095 -1.7 -1.2 pyrroline-5-carboxylate reductase compare
PP_1706 -1.7 -2.3 Nitrite reductase compare
PP_1764 -1.6 -1.9 Phosphoglycolate phosphatase 2 compare
PP_0949 -1.6 -3.3 putative ATP-binding protein UPF0042 compare
PP_2720 -1.6 -0.9 conserved protein of unknown function compare
PP_0083 -1.6 -2.9 tryptophan synthase beta chain compare
PP_4122 -1.6 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1692 -1.6 -2.2 conserved protein of unknown function compare
PP_4546 -1.6 -3.5 ATP-dependent helicase HrpA compare
PP_1552 -1.6 -2.6 putative Phage replication protein compare
PP_4707 -1.6 -1.7 OsmY-related protein compare
PP_0966 -1.6 -5.1 Histidinol dehydrogenase compare
PP_1088 -1.6 -4.8 Argininosuccinate synthase compare
PP_0948 -1.5 -1.2 Phosphocarrier protein HPr compare
PP_3902 -1.5 -2.4 conserved protein of unknown function compare
PP_5317 -1.5 -2.4 Probable chorismate pyruvate-lyase compare
PP_5155 -1.5 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1344 -1.5 -1.0 conserved protein of unknown function compare
PP_3726 -1.5 -1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_5329 -1.5 -2.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2087 -1.5 -2.3 CmpX protein compare
PP_1493 -1.5 -1.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4804 -1.5 -1.6 RlpA-like lipoprotein compare
PP_4966 -1.5 -2.4 transcriptional regulator of methionine metabolism compare
PP_5639 -1.5 -4.6 conserved exported protein of unknown function compare
PP_4988 -1.5 -3.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1733 -1.5 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1002 -1.5 -3.3 arginine/ornithine antiporter compare
PP_4696 -1.5 -2.3 Nitrogen regulation protein NR(I) compare
PP_2371 -1.5 -2.4 Sulphite reductase hemoprotein, beta subunit compare
PP_3840 -1.4 -1.0 conserved protein of unknown function compare
PP_5227 -1.4 -3.9 diaminopimelate decarboxylase compare
PP_5217 -1.4 -4.6 Polyphosphate kinase compare
PP_5346 -1.4 -2.9 pyruvate carboxylase subunit B compare
PP_0421 -1.4 -3.5 Anthranilate phosphoribosyltransferase compare
PP_4880 -1.4 -5.0 exoribonuclease R compare
PP_5674 -1.4 -2.3 conserved protein of unknown function compare
PP_1664 -1.4 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4808 -1.4 -1.5 23S rRNA m3psi1915 methyltransferase compare
PP_5604 -1.4 -0.7 putative subtilisin-like serine protease compare
PP_3002 -1.4 -2.2 shikimate dehydrogenase-related enzyme compare
PP_0352 -1.4 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3065 -1.4 -4.1 Pyocin R2_PP, tail formation compare
PP_0833 -1.4 -1.4 queuine tRNA-ribosyltransferase compare
PP_2794 -1.4 -1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4909 -1.3 -3.4 phosphoserine phosphatase compare
PP_1026 -1.3 -2.1 Peptidase, M23/M37 family compare
PP_0218 -1.3 -4.0 Sensory box protein compare
PP_3967 -1.3 -1.3 MutT/nudix family protein compare
PP_2568 -1.3 -0.9 Ring-cleaving dioxygenase compare
PP_1025 -1.3 -5.0 2-isopropylmalate synthase compare
PP_5423 -1.3 -0.9 conserved membrane protein of unknown function compare
PP_5185 -1.3 -2.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -1.3 -3.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5658 -1.3 -1.6 protein of unknown function compare
PP_5156 -1.3 -2.0 conserved exported protein of unknown function compare
PP_4874 -1.3 -1.0 50S ribosomal protein L9 compare
PP_4214 -1.3 -1.5 pyoverdine biosynthesis related protein compare
PP_1131 -1.3 -1.9 outer membrane lipoprotein compare
PP_2668 -1.3 -1.5 ABC efflux transporter, ATP-binding protein compare
PP_4989 -1.3 -1.5 Protein PilJ compare
PP_5098 -1.3 -2.5 methionine biosynthesis protein MetW compare
PP_4205 -1.2 -3.3 mRNA interferase MqsR of the MqsA-MqsR antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_3417 -1.2 -3.4 D-gluconate transporter compare
PP_3314 -1.2 -2.8 Heat shock protein, HSP20 family compare
PP_1554 -1.2 -2.3 conserved protein of unknown function compare
PP_5507 -1.2 -2.2 protein of unknown function compare
PP_2899 -1.2 -1.5 conserved exported protein of unknown function compare
PP_1216 -1.2 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1629 -1.2 -2.5 Protein RecA compare
PP_2031 -1.2 -1.4 conserved protein of unknown function compare
PP_2227 -1.2 -2.7 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_5712 -1.2 -1.3 conserved protein of unknown function compare
PP_5328 -1.2 -1.3 putative phosphate transport system permease protein compare
PP_5441 -1.2 -1.6 protein of unknown function compare
PP_0958 -1.2 -2.9 phospholipid ABC transporter ATP-binding subunit compare
PP_1783 -1.2 -1.5 dTDP-glucose pyrophosphorylase compare
PP_0999 -1.2 -1.3 carbamate kinase compare
PP_1428 -1.2 -1.1 Sigma factor AlgU negative regulatory protein compare
PP_1353 -1.2 -1.6 conserved membrane protein of unknown function compare
PP_2878 -1.2 -1.2 conserved protein of unknown function compare
PP_0872 -1.2 -2.8 Peptide chain release factor 3 compare
PP_1468 -1.2 -1.6 Tyrosine recombinase XerD compare
PP_3384 -1.2 -1.7 gluconate 2-dehydrogenase gamma subunit compare
PP_3649 -1.1 -2.7 Transcriptional regulator, GntR family compare
PP_4296 -1.1 -1.0 conserved exported protein of unknown function compare
PP_1763 -1.1 -1.2 putative oxidoreductase compare
PP_0880 -1.1 -1.2 dipeptide ABC transporter - putative membrane subunit compare
PP_5309 -1.1 -2.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2526 -1.1 -1.4 conserved membrane protein of unknown function compare
PP_4124 -1.1 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_4571 -1.1 -3.4 cysteine synthase A compare
PP_1265 -1.1 -2.2 conserved protein of unknown function compare
PP_2504 -1.1 -1.8 putative tautomerase K2 compare
PP_4681 -1.1 -1.8 conserved protein of unknown function compare
PP_0642 -1.1 -2.8 conserved membrane protein of unknown function compare
PP_2302 -1.1 -2.2 DNA-binding, ATP-dependent protease compare
PP_1137 -1.1 -2.5 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_5167 -1.1 -1.5 conserved hypothetical protein compare
PP_3773 -1.1 -2.3 conserved protein of unknown function compare
PP_4419 -1.1 -1.3 transposase compare
PP_3892 -1.1 -0.8 conserved protein of unknown function compare
PP_2793 -1.1 -1.1 Acyl-CoA dehydrogenase family protein compare
PP_5582 -1.0 -0.9 conserved protein of unknown function compare
PP_0439 -1.0 -1.6 conserved protein of unknown function compare
PP_1111 -1.0 -2.4 putative Synthetase compare
PP_1076 -1.0 -2.5 aquaglyceroporin compare
PP_5076 -1.0 -5.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_4045 -1.0 -0.9 conserved protein of unknown function compare
PP_5621 -1.0 -1.3 protein of unknown function compare
PP_5439 -1.0 -2.6 conserved protein of unknown function compare
PP_1655 -1.0 -2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4697 -1.0 -2.4 poly(A) polymerase compare
PP_3411 -1.0 -0.7 conserved protein of unknown function compare
PP_1001 -1.0 -1.2 arginine deiminase compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas putida KT2440

For nitrogen source Sodium nitrite across organisms