Experiment set26IT006 for Pseudomonas putida KT2440

Compare to:

nitrogen source Sodium nitrate 5mM

200 most important genes:

  gene name fitness t score description  
PP_0856 -7.4 -5.1 conserved lipoprotein of unknown function compare
PP_1986 -6.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_0846 -5.6 -2.6 DnaK-like molecular chaperone specific for IscU compare
PP_5015 -4.7 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1985 -4.4 -5.1 3-isopropylmalate dehydratase large subunit compare
PP_1654 -4.4 -3.0 cysteine synthase B compare
PP_5014 -4.3 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2001 -4.3 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_4799 -4.0 -5.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0691 -4.0 -4.7 Glutamate 5-kinase compare
PP_5047 -3.9 -4.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3511 -3.8 -7.4 Branched-chain-amino-acid aminotransferase compare
PP_4909 -3.6 -7.7 phosphoserine phosphatase compare
PP_4678 -3.5 -10.0 Ketol-acid reductoisomerase compare
PP_1988 -3.5 -6.0 3-isopropylmalate dehydrogenase compare
PP_1994 -3.5 -4.6 tRNA pseudouridine (38-40)synthase compare
PP_4890 -3.4 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4098 -3.4 -3.3 UvrABC system protein C compare
PP_5048 -3.4 -4.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4680 -3.3 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.3 -11.0 Anthranilate synthase component 1 compare
PP_4265 -3.2 -4.3 DNA-binding transcriptional dual regulator compare
PP_0293 -3.2 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0420 -3.1 -7.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1589 -3.1 -7.5 uridylyltransferase compare
PP_1656 -3.0 -8.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0422 -3.0 -4.1 Indole-3-glycerol phosphate synthase compare
PP_0289 -3.0 -4.7 Imidazoleglycerol-phosphate dehydratase compare
PP_2122 -3.0 -2.3 molybdenum cofactor biosynthesis protein B compare
PP_5075 -3.0 -8.1 glutamate synthase (NADPH) beta subunit compare
PP_0966 -3.0 -6.9 Histidinol dehydrogenase compare
PP_0083 -2.9 -6.3 tryptophan synthase beta chain compare
PP_1292 -2.9 -7.7 Cyclic pyranopterin monophosphate synthase accessory protein conserved
PP_2168 -2.9 -7.0 Transaldolase compare
PP_2088 -2.9 -2.8 RNA polymerase sigma factor SigX compare
PP_4058 -2.8 -8.0 1,4-alpha-glucan branching enzyme compare
PP_4679 -2.8 -4.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2092 -2.8 -4.8 Nitrate transporter conserved
PP_1088 -2.8 -7.5 Argininosuccinate synthase compare
PP_0164 -2.8 -5.5 conserved protein of unknown function compare
PP_4723 -2.7 -7.4 Carbamoyl-phosphate synthase large chain compare
PP_1353 -2.7 -3.7 conserved membrane protein of unknown function compare
PP_4597 -2.7 -4.1 Cyclic pyranopterin monophosphate synthase conserved
PP_4693 -2.7 -5.5 RNA polymerase-binding transcription factor DksA compare
PP_3662 -2.6 -6.2 conserved protein of unknown function compare
PP_0082 -2.6 -4.7 tryptophan synthase alpha chain compare
PP_1995 -2.6 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2093 -2.6 -6.0 NasT conserved
PP_1703 -2.6 -7.7 assimilatory nitrate reductase/sulfite reductase conserved
PP_5076 -2.6 -10.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_3999 -2.6 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0967 -2.5 -5.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -2.5 -4.3 Ornithine carbamoyltransferase compare
PP_1294 -2.5 -3.4 molybdopterin synthase large subunit conserved
PP_2371 -2.5 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5097 -2.5 -7.6 homoserine O-acetyltransferase compare
PP_0339 -2.4 -5.1 Pyruvate dehydrogenase E1 component compare
PP_2327 -2.4 -4.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5267 -2.4 -1.8 putative cytochrome c5 compare
PP_0965 -2.3 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1706 -2.3 -2.9 Nitrite reductase conserved
PP_5098 -2.3 -4.8 methionine biosynthesis protein MetW compare
PP_4696 -2.2 -4.2 Nitrogen regulation protein NR(I) compare
PP_1022 -2.2 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_2094 -2.2 -3.4 putative Nitrate-binding protein NasS compare
PP_0421 -2.1 -4.4 Anthranilate phosphoribosyltransferase compare
PP_3417 -2.1 -4.2 D-gluconate transporter compare
PP_0292 -2.1 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1025 -2.1 -7.4 2-isopropylmalate synthase compare
PP_0290 -2.1 -4.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4560 -2.1 -4.9 putative Ribonuclease BN compare
PP_2123 -2.0 -6.1 molybdenum::molybdopterin ligase conserved
PP_5128 -2.0 -4.6 Dihydroxy-acid dehydratase compare
PP_1002 -2.0 -5.3 arginine/ornithine antiporter compare
PP_4724 -2.0 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_5289 -2.0 -2.6 Acetylglutamate kinase compare
PP_0833 -2.0 -2.0 queuine tRNA-ribosyltransferase compare
PP_4902 -1.9 -3.0 Oligoribonuclease compare
PP_5348 -1.9 -4.9 Transcriptional regulator, LysR family compare
PP_5185 -1.9 -3.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5155 -1.9 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4700 -1.8 -2.5 pantothenate synthetase compare
PP_2145 -1.8 -1.7 beta-N-acetylglucosaminidase compare
PP_0980 -1.8 -6.0 Probable cytosol aminopeptidase compare
PP_2880 -1.8 -1.4 Transcriptional regulator, TetR family compare
PP_2433 -1.7 -2.2 conserved protein of unknown function compare
PP_2378 -1.7 -2.2 Fe/S biogenesis protein NfuA compare
PP_0735 -1.7 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_2402 -1.7 -2.4 putative Sensor histidine kinase compare
PP_1664 -1.7 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1705 -1.7 -4.9 nitrite reductase [NAD(P)H] large subunit conserved
PP_5652 -1.6 -2.6 conserved protein of unknown function, phage origin compare
PP_1553 -1.6 -1.7 conserved protein of unknown function compare
PP_5329 -1.6 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0218 -1.6 -5.4 Sensory box protein compare
PP_0998 -1.6 -4.4 conserved protein of unknown function compare
PP_5303 -1.5 -2.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5639 -1.5 -5.0 conserved exported protein of unknown function compare
PP_2530 -1.5 -1.9 conserved protein of unknown function compare
PP_2328 -1.5 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_3035 -1.5 -1.7 conserved protein of unknown function compare
PP_1001 -1.5 -2.5 arginine deiminase compare
PP_0123 -1.5 -5.8 DNA polymerase I, 5 compare
PP_0999 -1.5 -1.9 carbamate kinase compare
PP_5610 -1.5 -1.8 protein of unknown function compare
PP_1366 -1.4 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_5227 -1.4 -4.0 diaminopimelate decarboxylase compare
PP_2999 -1.4 -1.3 Glyoxalase family protein compare
PP_0065 -1.4 -2.7 NAD-binding component of TrK potassium transporter compare
PP_0801 -1.4 -1.1 conserved exported protein of unknown function compare
PP_5346 -1.4 -3.8 pyruvate carboxylase subunit B compare
PP_5054 -1.4 -1.2 glutaredoxin 3 compare
PP_4120 -1.4 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_1733 -1.4 -1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_0184 -1.4 -4.1 Argininosuccinate lyase compare
PP_4273 -1.4 -1.4 Transcriptional regulator, MerR family compare
PP_1233 -1.4 -2.5 sulfurtransferase compare
PP_1528 -1.4 -1.2 conserved protein of unknown function compare
PP_0261 -1.3 -2.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4701 -1.3 -1.0 glucose-6-phosphate isomerase compare
PP_5347 -1.3 -4.3 pyruvate carboxylase subunit A compare
PP_3551 -1.3 -1.8 DNA-binding response regulator, LuxR family compare
PP_4999 -1.3 -1.5 dihydroorotase-like protein compare
PP_3064 -1.3 -1.8 Phage tail protein compare
PP_1513 -1.3 -2.8 Ribosomal RNA small subunit methyltransferase J compare
PP_1493 -1.3 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4354 -1.3 -2.8 flagellar export apparatus subunit compare
PP_4895 -1.3 -2.3 tRNA dimethylallyltransferase compare
PP_5027 -1.3 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2000 -1.3 -2.0 amidophosphoribosyl transferase compare
PP_5310 -1.2 -3.8 junction-specific ATP-dependent DNA helicase compare
PP_0855 -1.2 -1.2 conserved protein of unknown function compare
PP_4008 -1.2 -3.9 ATP-dependent serine protease compare
PP_0393 -1.2 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0150 -1.2 -1.6 conserved exported protein of unknown function compare
PP_1362 -1.2 -2.0 pyruvate kinase II compare
PP_1730 -1.2 -2.8 Probable M18 family aminopeptidase 2 compare
PP_0022 -1.2 -1.0 hypothetical protein compare
PP_4223 -1.2 -1.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0381 -1.2 -4.3 Coenzyme PQQ synthesis protein F compare
PP_4204 -1.1 -2.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5233 -1.1 -3.3 ammonium transporter AmtB compare
PP_1511 -1.1 -2.7 conserved protein of unknown function compare
PP_3052 -1.1 -1.0 conserved protein of unknown function compare
PP_1655 -1.1 -2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4952 -1.1 -0.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5295 -1.1 -1.0 conserved protein of unknown function compare
PP_0848 -1.1 -1.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4424 -1.1 -1.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2903 -1.1 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0484 -1.1 -2.7 transporter of an unknown substrate compare
PP_0376 -1.1 -4.7 Coenzyme PQQ synthesis protein E compare
PP_3065 -1.1 -2.7 Pyocin R2_PP, tail formation compare
PP_1015 -1.1 -3.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_4355 -1.1 -1.2 flagellar export apparatus subunit compare
PP_5145 -1.1 -6.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1054 -1.1 -0.9 Type II secretion pathway protein XcpZ compare
PP_5508 -1.1 -0.8 conserved protein of unknown function compare
PP_3248 -1.0 -1.9 Dyp-type peroxidase family protein compare
PP_2504 -1.0 -1.6 putative tautomerase K2 compare
PP_3649 -1.0 -2.2 Transcriptional regulator, GntR family compare
PP_4875 -1.0 -2.1 conserved membrane protein of unknown function compare
PP_1142 -1.0 -1.0 conserved protein of unknown function compare
PP_0001 -1.0 -1.3 probable chromosome-partitioning protein compare
PP_1164 -1.0 -1.1 Transcriptional regulator, LysR family compare
PP_5621 -1.0 -1.6 protein of unknown function compare
PP_2616 -1.0 -2.1 conserved protein of unknown function compare
PP_0379 -1.0 -2.9 Coenzyme PQQ synthesis protein B compare
PP_3481 -1.0 -1.4 conserved exported protein of unknown function compare
PP_0781 -1.0 -1.5 conserved protein of unknown function compare
PP_2087 -1.0 -1.5 CmpX protein compare
PP_1110 -1.0 -2.1 serine acetyltransferase compare
PP_4808 -1.0 -1.7 23S rRNA m3psi1915 methyltransferase compare
PP_1575 -1.0 -1.6 conserved protein of unknown function compare
PP_3640 -1.0 -2.7 Transcriptional regulator, AraC family compare
PP_4532 -1.0 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4262 -1.0 -1.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5309 -1.0 -2.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0949 -0.9 -3.0 putative ATP-binding protein UPF0042 compare
PP_0194 -0.9 -2.1 Transcriptional regulatory protein AlgP compare
PP_1834 -0.9 -1.6 conserved protein of unknown function compare
PP_4480 -0.9 -3.6 arginine N-succinyltransferase, subunit alpha compare
PP_5001 -0.9 -2.1 protease HslVU, ATPase component compare
PP_0888 -0.9 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_2132 -0.9 -1.5 Universal stress protein compare
PP_2777 -0.9 -2.3 putative Acyl carrier protein compare
PP_1111 -0.9 -3.1 putative Synthetase compare
PP_4504 -0.9 -1.4 conserved exported protein of unknown function compare
PP_0092 -0.9 -3.0 putative lipoprotein compare
PP_2217 -0.9 -1.6 enoyl-CoA hydratase compare
PP_4546 -0.9 -2.4 ATP-dependent helicase HrpA compare
PP_0787 -0.9 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0127 -0.9 -1.9 Thiol:disulfide interchange protein compare
PP_4122 -0.9 -0.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4178 -0.9 -2.7 Dienelactone hydrolase family protein compare
PP_2773 -0.9 -1.2 conserved protein of unknown function compare
PP_1317 -0.9 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0832 -0.9 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5146 -0.9 -3.1 RNA pyrophosphohydrolase compare
PP_5393 -0.9 -1.0 putative metal-binding chaperone compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas putida KT2440

For nitrogen source Sodium nitrate across organisms