Experiment set26IT005 for Pseudomonas putida KT2440

Compare to:

nitrogen source Sodium nitrate 20mM

200 most important genes:

  gene name fitness t score description  
PP_0856 -5.4 -8.0 conserved lipoprotein of unknown function compare
PP_2168 -5.4 -13.3 Transaldolase compare
PP_4799 -5.4 -3.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5015 -5.0 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1985 -4.8 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_1706 -4.7 -5.5 Nitrite reductase conserved
PP_1293 -4.7 -1.8 molybdopterin synthase small subunit compare
PP_0292 -4.7 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2088 -4.6 -4.6 RNA polymerase sigma factor SigX compare
PP_1995 -4.5 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -4.5 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -4.3 -8.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -4.3 -5.2 Glutamate 5-kinase compare
PP_3511 -4.3 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_1988 -4.2 -6.8 3-isopropylmalate dehydrogenase compare
PP_0966 -4.1 -9.0 Histidinol dehydrogenase compare
PP_1020 -4.1 -2.4 putative glucose-6-phosphate 1-epimerase compare
PP_0290 -4.0 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0420 -3.9 -8.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4700 -3.8 -5.7 pantothenate synthetase compare
PP_4678 -3.7 -11.1 Ketol-acid reductoisomerase compare
PP_4122 -3.6 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4999 -3.5 -2.2 dihydroorotase-like protein compare
PP_2123 -3.5 -8.9 molybdenum::molybdopterin ligase conserved
PP_0422 -3.5 -5.8 Indole-3-glycerol phosphate synthase compare
PP_1705 -3.5 -8.6 nitrite reductase [NAD(P)H] large subunit conserved
PP_4680 -3.4 -11.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -3.4 -8.7 Argininosuccinate synthase compare
PP_0082 -3.4 -5.8 tryptophan synthase alpha chain compare
PP_5097 -3.4 -11.7 homoserine O-acetyltransferase compare
PP_1589 -3.4 -9.7 uridylyltransferase compare
PP_0967 -3.4 -6.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0417 -3.3 -14.3 Anthranilate synthase component 1 compare
PP_0184 -3.3 -5.6 Argininosuccinate lyase compare
PP_2093 -3.3 -8.9 NasT conserved
PP_1656 -3.3 -8.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1654 -3.3 -4.3 cysteine synthase B compare
PP_4724 -3.2 -2.2 Carbamoyl-phosphate synthase small chain compare
PP_4693 -3.2 -6.0 RNA polymerase-binding transcription factor DksA compare
PP_5075 -3.2 -9.6 glutamate synthase (NADPH) beta subunit compare
PP_5047 -3.0 -3.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4890 -3.0 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0833 -3.0 -2.0 queuine tRNA-ribosyltransferase compare
PP_1986 -3.0 -3.6 3-isopropylmalate dehydratase small subunit compare
PP_3999 -2.9 -7.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1237 -2.9 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1292 -2.9 -5.1 Cyclic pyranopterin monophosphate synthase accessory protein conserved
PP_0965 -2.9 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0164 -2.8 -5.2 conserved protein of unknown function compare
PP_2001 -2.8 -6.4 O-succinylhomoserine sulfhydrylase compare
PP_2371 -2.7 -6.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1079 -2.7 -4.5 Ornithine carbamoyltransferase compare
PP_0339 -2.7 -1.9 Pyruvate dehydrogenase E1 component compare
PP_4273 -2.6 -1.8 Transcriptional regulator, MerR family compare
PP_3248 -2.6 -5.3 Dyp-type peroxidase family protein compare
PP_5076 -2.5 -11.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_5098 -2.5 -4.8 methionine biosynthesis protein MetW compare
PP_2327 -2.5 -4.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4723 -2.5 -6.6 Carbamoyl-phosphate synthase large chain compare
PP_0421 -2.5 -5.9 Anthranilate phosphoribosyltransferase compare
PP_3312 -2.5 -2.3 putative Heat shock protein compare
PP_1428 -2.5 -2.7 Sigma factor AlgU negative regulatory protein compare
PP_4560 -2.5 -6.1 putative Ribonuclease BN compare
PP_4126 -2.4 -2.5 NADH-quinone oxidoreductase subunit I compare
PP_5185 -2.4 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4696 -2.3 -4.4 Nitrogen regulation protein NR(I) compare
PP_4909 -2.3 -6.1 phosphoserine phosphatase compare
PP_1294 -2.3 -3.7 molybdopterin synthase large subunit conserved
PP_5048 -2.3 -5.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5155 -2.3 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5014 -2.3 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2092 -2.2 -6.1 Nitrate transporter conserved
PP_5303 -2.2 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1186 -2.2 -1.9 two component system DNA-binding transcriptional dual regulator compare
PP_3662 -2.2 -5.2 conserved protein of unknown function compare
PP_0291 -2.2 -2.8 conserved protein of unknown function compare
PP_2094 -2.2 -4.6 putative Nitrate-binding protein NasS compare
PP_5347 -2.1 -7.3 pyruvate carboxylase subunit A compare
PP_1703 -2.1 -9.3 assimilatory nitrate reductase/sulfite reductase conserved
PP_5128 -2.1 -5.2 Dihydroxy-acid dehydratase compare
PP_2765 -2.0 -2.5 putative Sulfonate monooxygenase MsuD compare
PP_1025 -2.0 -6.0 2-isopropylmalate synthase compare
PP_0735 -2.0 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_5346 -2.0 -5.4 pyruvate carboxylase subunit B compare
PP_0855 -2.0 -2.1 conserved protein of unknown function compare
PP_0083 -2.0 -5.3 tryptophan synthase beta chain compare
PP_0980 -2.0 -4.6 Probable cytosol aminopeptidase compare
PP_2370 -1.9 -2.3 conserved protein of unknown function compare
PP_1664 -1.8 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0261 -1.8 -4.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4597 -1.8 -3.1 Cyclic pyranopterin monophosphate synthase conserved
PP_5313 -1.8 -1.6 DNA-binding protein HU-alpha compare
PP_2122 -1.8 -2.5 molybdenum cofactor biosynthesis protein B compare
PP_5348 -1.8 -5.0 Transcriptional regulator, LysR family compare
PP_0949 -1.8 -3.8 putative ATP-binding protein UPF0042 compare
PP_0293 -1.7 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4265 -1.7 -2.5 DNA-binding transcriptional dual regulator compare
PP_0719 -1.7 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4058 -1.7 -6.7 1,4-alpha-glucan branching enzyme compare
PP_1000 -1.7 -4.8 ornithine carbamoyltransferase, catabolic compare
PP_5017 -1.7 -1.3 Sec-independent protein translocase protein TatB compare
PP_5289 -1.7 -3.3 Acetylglutamate kinase compare
PP_5227 -1.6 -4.7 diaminopimelate decarboxylase compare
PP_2087 -1.6 -2.9 CmpX protein compare
PP_1001 -1.6 -2.0 arginine deiminase compare
PP_5095 -1.6 -1.2 pyrroline-5-carboxylate reductase compare
PP_1783 -1.5 -2.5 dTDP-glucose pyrophosphorylase compare
PP_4098 -1.5 -2.2 UvrABC system protein C compare
PP_4424 -1.5 -2.1 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_t12 -1.5 -0.9 tRNA-Thr compare
PP_2794 -1.5 -1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1629 -1.5 -4.4 Protein RecA compare
PP_5000 -1.5 -1.9 peptidase component of the ATP-dependent HslVU protease compare
PP_5471 -1.5 -2.2 putative response regulator receiver protein compare
PP_3417 -1.4 -3.9 D-gluconate transporter compare
PP_5350 -1.4 -2.9 Transcriptional regulator, RpiR family compare
PP_5233 -1.4 -4.5 ammonium transporter AmtB compare
PP_1233 -1.4 -2.1 sulfurtransferase compare
PP_2899 -1.4 -1.9 conserved exported protein of unknown function compare
PP_4701 -1.4 -1.0 glucose-6-phosphate isomerase compare
PP_5717 -1.4 -1.8 conserved protein of unknown function compare
PP_3376 -1.4 -3.1 putative phosphonate dehydrogenase compare
PP_0948 -1.3 -1.4 Phosphocarrier protein HPr compare
PP_2403 -1.3 -1.6 Chemotaxis protein CheY compare
PP_0393 -1.3 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3065 -1.3 -3.9 Pyocin R2_PP, tail formation compare
PP_0003 -1.3 -2.9 16S RNA methyltransferase compare
PP_4362 -1.3 -2.8 conserved protein of unknown function compare
PP_0123 -1.3 -5.5 DNA polymerase I, 5 compare
PP_4262 -1.3 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0218 -1.3 -4.7 Sensory box protein compare
PP_0232 -1.3 -1.3 ATP-binding taurine transporter subunit compare
PP_1099 -1.3 -1.4 Cold shock protein CapB compare
PP_0760 -1.3 -2.3 conserved membrane protein of unknown function compare
PP_1022 -1.2 -3.5 glucose 6-phosphate-1-dehydrogenase compare
PP_2402 -1.2 -1.5 putative Sensor histidine kinase compare
PP_3790 -1.2 -5.2 diaminopimelate epimerase compare
PP_0513 -1.2 -2.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3880 -1.2 -1.3 conserved exported protein of unknown function compare
PP_1468 -1.2 -2.5 Tyrosine recombinase XerD compare
PP_3365 -1.2 -0.8 Acetolactate synthase compare
PP_4296 -1.2 -1.1 conserved exported protein of unknown function compare
PP_2633 -1.2 -1.4 conserved protein of unknown function compare
PP_0951 -1.2 -4.7 Ribosome hibernation promoting factor compare
PP_1002 -1.2 -2.9 arginine/ornithine antiporter compare
PP_0683 -1.2 -2.6 conserved protein of unknown function compare
PP_0381 -1.2 -4.5 Coenzyme PQQ synthesis protein F compare
PP_3926 -1.2 -1.4 short-chain dehydrogenase compare
PP_3519 -1.1 -1.2 putative Lipoprotein compare
PP_1142 -1.1 -1.1 conserved protein of unknown function compare
PP_1366 -1.1 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_4787 -1.1 -1.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5232 -1.1 -1.8 conserved protein of unknown function compare
PP_0127 -1.1 -3.2 Thiol:disulfide interchange protein compare
PP_4593 -1.1 -1.5 conserved protein of unknown function compare
PP_3318 -1.1 -1.7 conserved protein of unknown function compare
PP_2499 -1.1 -1.0 conserved protein of unknown function compare
PP_2313 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_3649 -1.1 -3.0 Transcriptional regulator, GntR family compare
PP_1493 -1.1 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4804 -1.1 -2.1 RlpA-like lipoprotein compare
PP_5295 -1.1 -0.8 conserved protein of unknown function compare
PP_1109 -1.1 -6.2 Transcriptional regulator, GntR family compare
PP_4227 -1.1 -1.5 conserved protein of unknown function compare
PP_5639 -1.1 -4.5 conserved exported protein of unknown function compare
PP_2433 -1.0 -1.5 conserved protein of unknown function compare
PP_1011 -1.0 -4.1 glucokinase compare
PP_2648 -1.0 -3.3 Universal stress protein family compare
PP_0376 -1.0 -4.0 Coenzyme PQQ synthesis protein E compare
PP_2054 -1.0 -1.8 putative DNA-binding transcriptional regulator compare
PP_0941 -1.0 -2.2 putative ribosome associated protein compare
PP_3891 -1.0 -2.7 conserved protein of unknown function compare
PP_4228 -1.0 -2.6 conserved protein of unknown function compare
PP_5309 -1.0 -2.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2337 -1.0 -1.9 aconitate isomerase compare
PP_1215 -1.0 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1764 -1.0 -1.7 Phosphoglycolate phosphatase 2 compare
PP_2497 -0.9 -2.0 conserved protein of unknown function compare
PP_5216 -0.9 -1.4 exopolyphosphatase compare
PP_2302 -0.9 -2.5 DNA-binding, ATP-dependent protease compare
PP_5145 -0.9 -6.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0999 -0.9 -2.1 carbamate kinase compare
PP_2504 -0.9 -2.0 putative tautomerase K2 compare
PP_4528 -0.9 -1.5 conserved protein of unknown function compare
PP_0575 -0.9 -3.0 conserved membrane protein of unknown function compare
PP_1917 -0.9 -4.4 4-amino-4-deoxychorismate lyase compare
PP_5310 -0.9 -3.2 junction-specific ATP-dependent DNA helicase compare
PP_4546 -0.9 -2.1 ATP-dependent helicase HrpA compare
PP_1826 -0.9 -1.4 Hydrolase, isochorismatase family compare
PP_1009 -0.9 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0809 -0.9 -4.4 disulfide bond formation protein B compare
PP_5580 -0.9 -1.2 protein of unknown function compare
PP_1713 -0.9 -0.8 Transcriptional regulator PcaQ compare
PP_1207 -0.9 -1.6 conserved protein of unknown function compare
PP_4895 -0.9 -1.8 tRNA dimethylallyltransferase compare
PP_2229 -0.8 -2.6 putative K(+)/H(+) antiporter subunit C compare
PP_4874 -0.8 -0.6 50S ribosomal protein L9 compare
PP_1609 -0.8 -1.3 conserved protein of unknown function compare
PP_1017 -0.8 -3.0 mannose/glucose ABC transporter, permease protein compare
PP_0942 -0.8 -4.2 regulatory protease compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas putida KT2440

For nitrogen source Sodium nitrate across organisms