Experiment set25IT055 for Pseudomonas simiae WCS417

200 most important genes:

gene	name	fitness	t score	description
PS417_19630		-4.9	-2.4	LuxR family transcriptional regulator
PS417_19425		-4.5	-1.0	allantoicase
PS417_03930		-4.4	-6.4	thymidine phosphorylase
PS417_21625		-4.3	-0.9	DNA-binding protein
PS417_26900		-4.1	-1.8	L-cystine transporter tcyP
PS417_02210		-4.0	-5.5	diguanylate cyclase
PS417_22060		-3.9	-1.2	hypothetical protein
PS417_00755		-3.8	-0.8	biofilm PGA synthesis protein PgaD
PS417_19600		-3.7	-1.2	exonuclease
PS417_19955		-3.5	-1.0	hypothetical protein
PS417_23995		-3.3	-0.7	preprotein translocase subunit SecG
PS417_20585		-3.1	-8.1	chemotaxis protein
PS417_06245		-3.1	-1.3	zinc metallopeptidase RseP
PS417_19350		-3.0	-3.5	GTP cyclohydrolase
PS417_23580		-3.0	-0.9	peptidylprolyl isomerase
PS417_23950		-2.9	-1.1	polynucleotide phosphorylase/polyadenylase
PS417_13075		-2.9	-1.7	hypothetical protein
PS417_19805		-2.9	-3.6	flagellar M-ring protein FliF
PS417_05975		-2.8	-0.6	chemotaxis protein CheW
PS417_19625		-2.8	-2.9	histidine kinase
PS417_17610		-2.6	-1.5	AsnC family transcriptional regulator
PS417_27195		-2.4	-0.8	N-acetylglutamate synthase
PS417_19755		-2.4	-1.6	flagellar motor switch protein FliM
PS417_21430		-2.3	-1.6	3-oxoacyl-ACP synthase
PS417_22175		-2.2	-2.0	amino acid transporter LysE
PS417_26340		-2.2	-4.6	betaine-aldehyde dehydrogenase
PS417_01145		-2.2	-1.1	taurine transporter ATP-binding subunit
PS417_27870		-2.2	-2.2	ATP-dependent DNA helicase RecG
PS417_26530		-2.2	-1.2	hypothetical protein
PS417_09575		-2.2	-2.5	glutathione S-transferase
PS417_09235		-2.1	-0.9	molecular chaperone
PS417_08685		-2.0	-1.2	flagellar hook-length control protein FliK
PS417_05365		-2.0	-1.8	FAD-binding protein
PS417_02555		-2.0	-11.3	exoribonuclease R
PS417_16665		-2.0	-1.5	hypothetical protein
PS417_09210		-2.0	-1.1	TetR family transcriptional regulator
PS417_10985		-2.0	-0.8	NADH:flavin oxidoreductase
PS417_19635		-2.0	-6.9	lipid kinase
PS417_00080		-2.0	-6.9	potassium transporter peripheral membrane component
PS417_22840		-1.9	-1.2	tRNA-Met
PS417_13305		-1.9	-1.3	hypothetical protein
PS417_14515		-1.9	-1.5	acetylglucosaminylphosphatidylinositol deacetylase
PS417_19675		-1.9	-2.7	chemotaxis protein CheY
PS417_24275		-1.9	-12.6	diguanylate phosphodiesterase
PS417_22450		-1.8	-0.7	ATP-dependent DNA helicase RuvA
PS417_27585		-1.8	-1.3	diaminopimelate epimerase
PS417_20610		-1.8	-1.3	hypothetical protein
PS417_20340		-1.8	-2.3	hypothetical protein
PS417_23490		-1.8	-1.1	dihydrofolate reductase
PS417_24650		-1.8	-1.8	membrane protein
PS417_24615		-1.8	-1.3	hypothetical protein
PS417_22565		-1.8	-0.4	formyltetrahydrofolate deformylase
PS417_25700		-1.7	-3.0	cyclic AMP receptor protein
PS417_17590		-1.7	-1.7	ABC transporter substrate-binding protein
PS417_19620		-1.7	-1.7	hypothetical protein
PS417_26420		-1.7	-0.9	hypothetical protein
PS417_02255		-1.7	-1.8	lipopolysaccharide kinase
PS417_15885		-1.7	-1.6	GCN5 family acetyltransferase
PS417_07095		-1.7	-5.2	histidine kinase
PS417_00630		-1.6	-3.8	nitrate ABC transporter substrate-binding protein
PS417_18070		-1.6	-0.9	general secretion pathway protein GspH
PS417_21655		-1.6	-0.8	aspartate kinase
PS417_21220		-1.6	-3.9	acetyl-CoA acetyltransferase
PS417_02630		-1.6	-1.8	NAD synthetase
PS417_19610		-1.6	-1.7	molybdenum cofactor sulfurase
PS417_27215		-1.5	-2.5	hypothetical protein
PS417_08590		-1.5	-1.7	hypothetical protein
PS417_07560		-1.5	-1.3	universal stress protein UspA
PS417_19645		-1.5	-2.5	chemotaxis protein
PS417_02485		-1.5	-3.1	tRNA delta(2)-isopentenylpyrophosphate transferase
PS417_02225		-1.5	-1.7	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
PS417_24500		-1.5	-1.8	DEAD/DEAH box helicase
PS417_05325		-1.5	-2.6	fimbrial protein
PS417_13620		-1.5	-1.1	thermostable hemolysin
PS417_24835		-1.5	-1.6	hypothetical protein
PS417_03350		-1.5	-2.9	cytochrome C peroxidase
PS417_06025		-1.5	-2.7	alpha/beta hydrolase
PS417_21125		-1.4	-3.8	phosphoadenosine phosphosulfate reductase
PS417_26260		-1.4	-1.2	hypothetical protein
PS417_05445		-1.4	-1.0	DNA mismatch repair protein MutT
PS417_05160		-1.4	-0.8	DNA polymerase III subunit chi
PS417_13885		-1.4	-2.2	chemotaxis protein CheY
PS417_24525		-1.4	-1.8	nuclease
PS417_23370		-1.4	-2.9	protoheme IX farnesyltransferase
PS417_20855		-1.4	-0.5	hypothetical protein
PS417_07640		-1.4	-2.8	glyceraldehyde-3-phosphate dehydrogenase
PS417_25340		-1.4	-4.3	membrane protein
PS417_04960		-1.4	-1.4	hypothetical protein
PS417_03045		-1.4	-1.1	hypothetical protein
PS417_24125		-1.4	-2.9	hypothetical protein
PS417_10535		-1.4	-4.0	hypothetical protein
PS417_00355		-1.4	-1.4	metal ABC transporter permease
PS417_02575		-1.4	-2.4	membrane protein
PS417_00625		-1.4	-3.0	taurine dioxygenase
PS417_28280		-1.3	-2.7	hypothetical protein
PS417_02280		-1.3	-0.9	GlcNAc-PI de-N-acetylase
PS417_07870		-1.3	-1.4	hypothetical protein
PS417_15285		-1.3	-0.8	type VI secretion protein
PS417_16715		-1.3	-1.1	DoxX family protein
PS417_23380		-1.3	-1.4	cytochrome o ubiquinol oxidase subunit III
PS417_27640		-1.3	-0.9	TetR family transcriptional regulator
PS417_20125		-1.3	-2.0	phosphoribosylglycinamide formyltransferase
PS417_17830		-1.3	-1.8	4-hydroxyphenylacetate isomerase
PS417_06490		-1.3	-1.9	hypothetical protein
PS417_21165		-1.3	-1.8	LysR family transcriptional regulator
PS417_04185		-1.2	-1.5	hypothetical protein
PS417_23310		-1.2	-2.5	glyoxalase
PS417_17070		-1.2	-1.1	RNA polymerase subunit sigma-24
PS417_02700		-1.2	-2.4	urease accessory protein UreG
PS417_15650		-1.2	-1.1	glutamine amidotransferase
PS417_06675		-1.2	-1.7	ATP-dependent helicase
PS417_16555		-1.2	-0.8	cupin
PS417_03560		-1.2	-0.7	GTP-binding protein
PS417_25380		-1.2	-1.4	hypothetical protein
PS417_24560		-1.2	-2.4	ferrous iron transporter
PS417_26120		-1.2	-1.6	hypothetical protein
PS417_27705		-1.2	-1.2	amino acid dehydrogenase
PS417_00900		-1.2	-1.5	4-aminobutyrate aminotransferase
PS417_06735		-1.2	-1.1	3-oxoadipate enol-lactonase
PS417_01560		-1.2	-1.5	imidazoleglycerol-phosphate dehydratase
PS417_22795		-1.2	-0.9	exclusion suppressor FxsA
PS417_18540		-1.2	-2.2	colicin V production CvpA
PS417_21535		-1.2	-3.0	chemotaxis protein CheY
PS417_10010		-1.2	-1.6	Replication protein P
PS417_23725		-1.1	-1.7	methylmalonate-semialdehyde dehydrogenase
PS417_22205		-1.1	-3.5	potassium transporter TrkH
PS417_07510		-1.1	-3.6	aspartyl beta-hydroxylase
PS417_19085		-1.1	-3.0	hypothetical protein
PS417_09655		-1.1	-1.8	RNA polymerase sigma factor
PS417_10715		-1.1	-1.6	Cro/Cl family transcriptional regulator
PS417_14160		-1.1	-2.3	hypothetical protein
PS417_07985		-1.1	-1.0	AbrB family transcriptional regulator
PS417_27245		-1.1	-2.1	aminotransferase DegT
PS417_06125		-1.1	-1.1	hypothetical protein
PS417_00535		-1.1	-1.9	Holliday junction resolvase
PS417_01290		-1.1	-1.0	ADP-ribose diphosphatase
PS417_01620		-1.1	-1.7	preprotein translocase subunit SecB
PS417_16950		-1.1	-2.2	fimbrial protein
PS417_26990		-1.1	-0.3	RNA pyrophosphohydrolase
PS417_14425		-1.1	-2.1	alkylhydroperoxidase
PS417_08620		-1.1	-0.7	hypothetical protein
PS417_02915		-1.1	-1.5	precorrin-3B C17-methyltransferase
PS417_17675		-1.1	-1.0	ABC transporter
PS417_17000		-1.1	-1.6	MerR family transcriptional regulator
PS417_04440		-1.1	-1.4	hypoxanthine-guanine phosphoribosyltransferase
PS417_06680		-1.1	-3.8	nuclease PIN
PS417_19800		-1.1	-0.9	flagellar motor switch protein FliG
PS417_06095		-1.0	-1.3	energy transducer TonB
PS417_23915		-1.0	-1.8	pantoate--beta-alanine ligase
PS417_12035		-1.0	-1.8	dihydroxyacetone kinase
PS417_10225		-1.0	-2.4	chitinase
PS417_17705		-1.0	-1.4	LacI family transcriptional regulator
PS417_05235		-1.0	-1.0	peptidase inhibitor I42
PS417_06375		-1.0	-0.4	deoxycytidine triphosphate deaminase
PS417_27425		-1.0	-3.4	exopolyphosphatase
PS417_18760		-1.0	-1.7	hypothetical protein
PS417_05500		-1.0	-0.8	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
PS417_20940		-1.0	-2.3	invasion protein IagB
PS417_16495		-1.0	-2.3	leucyl/phenylalanyl-tRNA--protein transferase
PS417_05985		-1.0	-1.1	chemotaxis protein CheY
PS417_15805		-1.0	-1.0	transporter
PS417_27290		-1.0	-0.6	hypothetical protein
PS417_00925		-1.0	-1.3	hypothetical protein
PS417_15095		-1.0	-1.2	hypothetical protein
PS417_02880		-1.0	-1.4	copper chaperone
PS417_19745		-1.0	-4.7	flagellar assembly protein FliO
PS417_18425		-1.0	-0.9	sporulation protein
PS417_04225		-1.0	-1.3	conjugal transfer protein TraR
PS417_20035		-1.0	-2.8	adenosylcobinamide kinase
PS417_12910		-1.0	-1.9	alanine racemase
PS417_15475		-1.0	-2.1	IclR family transcriptional regulator
PS417_18445		-1.0	-2.3	glycerol-3-phosphatase
PS417_05830		-1.0	-1.1	hypothetical protein
PS417_02075		-1.0	-2.1	thioesterase
PS417_01810		-0.9	-2.9	ABC transporter permease
PS417_23900		-0.9	-3.6	poly(A) polymerase
PS417_08130		-0.9	-0.9	aspartate aminotransferase
PS417_14890		-0.9	-1.7	LysR family transcriptional regulator
PS417_06145		-0.9	-0.6	hypothetical protein
PS417_23050		-0.9	-1.4	trehalose PTS system, EII-BC components TreB (from data)
PS417_27840		-0.9	-2.5	hypothetical protein
PS417_16055		-0.9	-1.4	biopolymer transporter TolR
PS417_11420		-0.9	-1.7	potassium transporter KefB
PS417_24620		-0.9	-1.1	hypothetical protein
PS417_18755		-0.9	-1.2	CrtK
PS417_03915		-0.9	-1.1	tRNA-Thr
PS417_00295		-0.9	-2.8	hypothetical protein
PS417_23575		-0.9	-1.4	hypothetical protein
PS417_15365		-0.9	-1.3	diaminopimelate epimerase
PS417_21510		-0.9	-1.3	histidine kinase
PS417_17835		-0.9	-1.4	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
PS417_21680		-0.9	-1.5	succinylglutamate desuccinylase
PS417_07300		-0.9	-2.8	LysR family transcriptional regulator
PS417_15005		-0.9	-1.7	hypothetical protein
PS417_13050		-0.9	-1.3	N-acetylglucosamine-6-sulfatase
PS417_14245		-0.9	-1.1	hypothetical protein
PS417_12205		-0.9	-2.6	hypothetical protein
PS417_08170		-0.9	-3.7	capsular biosynthesis protein
PS417_12110		-0.9	-0.6	ATP-binding protein
PS417_03685		-0.9	-1.3	FAD-dependent oxidoreductase

Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in phage experiments