Experiment set25IT052 for Pseudomonas simiae WCS417

Compare to:

P. simiae ORA MOI 1

200 most important genes:

  gene name fitness t score description  
PS417_19630 -4.6 -2.9 LuxR family transcriptional regulator compare
PS417_02210 -4.6 -6.2 diguanylate cyclase compare
PS417_20585 -4.5 -6.2 chemotaxis protein compare
PS417_03930 -4.4 -8.5 thymidine phosphorylase compare
PS417_19800 -3.9 -2.1 flagellar motor switch protein FliG compare
PS417_19625 -3.7 -5.0 histidine kinase compare
PS417_19350 -3.3 -4.5 GTP cyclohydrolase compare
PS417_18310 -3.1 -1.5 hypothetical protein compare
PS417_23580 -2.9 -1.1 peptidylprolyl isomerase compare
PS417_27870 -2.8 -2.7 ATP-dependent DNA helicase RecG compare
PS417_23950 -2.8 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_05985 -2.7 -2.5 chemotaxis protein CheY compare
PS417_01715 -2.7 -1.4 hypothetical protein compare
PS417_10040 -2.5 -1.0 MFS transporter compare
PS417_24275 -2.3 -14.9 diguanylate phosphodiesterase compare
PS417_02555 -2.1 -10.1 exoribonuclease R compare
PS417_06635 -2.1 -1.5 ferredoxin compare
PS417_06530 -2.1 -1.8 membrane protein compare
PS417_17240 -1.9 -2.0 trigger factor compare
PS417_07870 -1.9 -2.3 hypothetical protein compare
PS417_04380 -1.9 -0.9 ABC transporter permease compare
PS417_19645 -1.9 -3.3 chemotaxis protein compare
PS417_23900 -1.9 -8.1 poly(A) polymerase compare
PS417_21655 -1.8 -1.0 aspartate kinase compare
PS417_19635 -1.7 -6.2 lipid kinase compare
PS417_12565 -1.7 -2.2 2-dehydro-3-deoxygluconokinase compare
PS417_03260 -1.7 -0.6 5S ribosomal RNA compare
PS417_15285 -1.7 -1.1 type VI secretion protein compare
PS417_22205 -1.6 -5.6 potassium transporter TrkH compare
PS417_08685 -1.6 -1.1 flagellar hook-length control protein FliK compare
PS417_17795 -1.6 -1.9 ABC transporter permease compare
PS417_22565 -1.6 -0.4 formyltetrahydrofolate deformylase compare
PS417_03465 -1.6 -1.3 type III secretion protein compare
PS417_19805 -1.5 -2.9 flagellar M-ring protein FliF compare
PS417_05160 -1.5 -1.1 DNA polymerase III subunit chi compare
PS417_06145 -1.5 -0.9 hypothetical protein compare
PS417_01920 -1.5 -1.0 ATP-dependent protease subunit HslV compare
PS417_00080 -1.4 -5.7 potassium transporter peripheral membrane component compare
PS417_21120 -1.4 -3.3 phosphoserine phosphatase compare
PS417_26530 -1.4 -1.1 hypothetical protein compare
PS417_19095 -1.4 -1.2 hypothetical protein compare
PS417_03560 -1.4 -0.7 GTP-binding protein compare
PS417_05815 -1.4 -2.3 recombinase RecA compare
PS417_09470 -1.4 -0.9 hypothetical protein compare
PS417_00625 -1.4 -3.2 taurine dioxygenase compare
PS417_02485 -1.4 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_07095 -1.3 -4.2 histidine kinase compare
PS417_23915 -1.3 -2.6 pantoate--beta-alanine ligase compare
PS417_17840 -1.3 -1.9 betaine-aldehyde dehydrogenase compare
PS417_21125 -1.3 -4.4 phosphoadenosine phosphosulfate reductase compare
PS417_27425 -1.3 -5.1 exopolyphosphatase compare
PS417_20570 -1.3 -4.3 3-oxoacyl-ACP synthase compare
PS417_00630 -1.3 -2.8 nitrate ABC transporter substrate-binding protein compare
PS417_13050 -1.3 -2.0 N-acetylglucosamine-6-sulfatase compare
PS417_05975 -1.3 -0.5 chemotaxis protein CheW compare
PS417_12355 -1.2 -1.8 magnesium chelatase compare
PS417_21430 -1.2 -1.2 3-oxoacyl-ACP synthase compare
PS417_19675 -1.2 -2.1 chemotaxis protein CheY compare
PS417_26340 -1.2 -2.8 betaine-aldehyde dehydrogenase compare
PS417_26345 -1.2 -3.0 choline dehydrogenase compare
PS417_06125 -1.2 -1.7 hypothetical protein compare
PS417_12915 -1.2 -1.8 DNA-binding protein compare
PS417_11950 -1.2 -1.3 hypothetical protein compare
PS417_08990 -1.2 -2.1 ABC transporter substrate-binding protein compare
PS417_28325 -1.2 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_06455 -1.2 -3.3 Fe(II)-dependent oxygenase compare
PS417_12245 -1.2 -2.3 GNAT family acetyltransferase compare
PS417_24705 -1.2 -1.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_09445 -1.1 -2.2 antibiotic biosynthesis monooxygenase compare
PS417_01300 -1.1 -3.4 thioesterase compare
PS417_16195 -1.1 -0.6 AraC family transcriptional regulator compare
PS417_02575 -1.1 -2.7 membrane protein compare
PS417_26695 -1.1 -1.2 uracil phosphoribosyltransferase compare
PS417_05165 -1.1 -2.2 cytosol aminopeptidase compare
PS417_22175 -1.1 -1.5 amino acid transporter LysE compare
PS417_04050 -1.1 -1.7 peptide ABC transporter ATP-binding protein compare
PS417_13490 -1.1 -0.9 hypothetical protein compare
PS417_13735 -1.1 -1.3 hypothetical protein compare
PS417_00590 -1.1 -1.6 5S ribosomal RNA compare
PS417_25225 -1.1 -1.3 MFS transporter compare
PS417_14985 -1.0 -2.5 Fe-S protein compare
PS417_02185 -1.0 -3.9 type IV secretion protein Rhs compare
PS417_25275 -1.0 -1.6 hypothetical protein compare
PS417_14425 -1.0 -2.7 alkylhydroperoxidase compare
PS417_27640 -1.0 -0.9 TetR family transcriptional regulator compare
PS417_18455 -1.0 -1.7 hypothetical protein compare
PS417_06400 -1.0 -2.3 succinylglutamate desuccinylase compare
PS417_02280 -1.0 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_11555 -1.0 -2.1 (2Fe-2S)-binding protein compare
PS417_26990 -1.0 -0.4 RNA pyrophosphohydrolase compare
PS417_23370 -1.0 -2.3 protoheme IX farnesyltransferase compare
PS417_16055 -1.0 -1.6 biopolymer transporter TolR compare
PS417_01945 -1.0 -2.3 nuclease compare
PS417_15705 -1.0 -1.1 nitrate reductase compare
PS417_19615 -1.0 -3.1 chemotaxis protein CheW compare
PS417_06680 -1.0 -3.0 nuclease PIN compare
PS417_21000 -1.0 -1.0 CrfX protein compare
PS417_13800 -1.0 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02020 -1.0 -3.4 LysR family transcriptional regulator compare
PS417_11820 -0.9 -2.1 histidine kinase compare
PS417_28515 -0.9 -2.1 16S rRNA methyltransferase compare
PS417_27340 -0.9 -2.4 NADPH:quinone oxidoreductase compare
PS417_10405 -0.9 -0.6 filamentous hemagglutinin compare
PS417_15090 -0.9 -1.2 hypothetical protein compare
PS417_27245 -0.9 -1.4 aminotransferase DegT compare
PS417_12910 -0.9 -1.7 alanine racemase compare
PS417_18055 -0.9 -0.9 general secretion pathway protein GspK compare
PS417_22780 -0.9 -1.6 XRE family transcriptional regulator compare
PS417_11020 -0.9 -2.1 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PS417_19190 -0.9 -1.9 BolA family transcriptional regulator compare
PS417_27110 -0.9 -2.0 spermidine/putrescine ABC transporter permease compare
PS417_08540 -0.9 -1.8 RNA helicase compare
PS417_15470 -0.9 -2.5 saccharopine dehydrogenase compare
PS417_26445 -0.9 -1.5 ArsR family transcriptional regulator compare
PS417_17035 -0.9 -1.0 Cro/Cl family transcriptional regulator compare
PS417_26535 -0.9 -2.2 cytochrome B561 compare
PS417_12015 -0.9 -1.3 phosphoglycerate mutase compare
PS417_09140 -0.9 -1.5 biopolymer transporter ExbB compare
PS417_17780 -0.9 -0.9 Ais protein compare
PS417_01375 -0.9 -1.6 hypothetical protein compare
PS417_08135 -0.9 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27505 -0.9 -2.2 transcriptional regulator compare
PS417_20880 -0.9 -1.3 GntR family transcriptional regulator compare
PS417_05500 -0.9 -1.6 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_08535 -0.9 -2.6 enoyl-CoA hydratase compare
PS417_21830 -0.9 -1.5 TetR family transcriptional regulator compare
PS417_13755 -0.9 -1.7 oxidoreductase compare
PS417_01900 -0.9 -1.7 poly(3-hydroxyalkanoate) depolymerase compare
PS417_22705 -0.9 -1.3 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_01710 -0.9 -3.5 histidine utilization repressor compare
PS417_08225 -0.9 -2.0 acetolactate synthase compare
PS417_00380 -0.9 -2.7 zinc ABC transporter ATP-binding protein compare
PS417_12870 -0.9 -1.0 enoyl-CoA hydratase compare
PS417_26265 -0.9 -1.2 hypothetical protein compare
PS417_12280 -0.9 -1.3 MerR family transcriptional regulator compare
PS417_15370 -0.9 -2.0 kinase compare
PS417_15215 -0.8 -1.4 protein activator of alkane oxidation PraA compare
PS417_10265 -0.8 -1.3 peptidase compare
PS417_19565 -0.8 -2.3 TetR family transcriptional regulator compare
PS417_00920 -0.8 -2.1 diguanylate cyclase compare
PS417_12530 -0.8 -2.8 LysR family transcriptional regulator compare
PS417_15400 -0.8 -0.8 hypothetical protein compare
PS417_06865 -0.8 -1.5 transporter compare
PS417_17450 -0.8 -2.4 amino acid ABC transporter substrate-binding protein compare
PS417_21480 -0.8 -0.6 23S rRNA pseudouridylate synthase compare
PS417_12560 -0.8 -2.6 MFS transporter compare
PS417_21055 -0.8 -2.0 threonyl-tRNA synthetase compare
PS417_28020 -0.8 -1.1 chorismate--pyruvate lyase compare
PS417_22840 -0.8 -0.7 tRNA-Met compare
PS417_01545 -0.8 -1.9 adenine glycosylase compare
PS417_07540 -0.8 -2.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_16855 -0.8 -0.9 cation:proton antiporter compare
PS417_10665 -0.8 -1.3 hypothetical protein compare
PS417_05105 -0.8 -1.9 membrane protein compare
PS417_22250 -0.8 -2.3 pseudouridine synthase compare
PS417_11175 -0.8 -0.9 AraC family transcriptional regulator compare
PS417_08580 -0.8 -2.8 histidine kinase compare
PS417_10320 -0.8 -1.0 hypothetical protein compare
PS417_17960 -0.8 -2.2 LysR family transcriptional regulator compare
PS417_05555 -0.8 -1.4 amino acid ABC transporter permease compare
PS417_14755 -0.8 -0.8 UV damage repair endonuclease UvdE compare
PS417_03800 -0.8 -1.7 pilus assembly protein compare
PS417_17000 -0.8 -1.1 MerR family transcriptional regulator compare
PS417_12680 -0.8 -3.2 hypothetical protein compare
PS417_04015 -0.8 -1.1 choline ABC transporter permease compare
PS417_08410 -0.8 -0.8 hypothetical protein compare
PS417_13855 -0.8 -0.8 acetyl-CoA acetyltransferase compare
PS417_01100 -0.8 -1.8 amino acid ABC transporter permease compare
PS417_26240 -0.8 -1.4 N-methylproline demethylase compare
PS417_14260 -0.8 -1.6 phosphate ABC transporter permease compare
PS417_24575 -0.8 -0.8 hypothetical protein compare
PS417_13555 -0.8 -2.7 ABC transporter permease compare
PS417_10655 -0.8 -1.6 LuxR family transcriptional regulator compare
PS417_15805 -0.8 -1.0 transporter compare
PS417_16490 -0.8 -0.6 cell division protein FtsK compare
PS417_22050 -0.8 -1.7 ribonuclease BN compare
PS417_25120 -0.8 -1.5 capsular biosynthesis protein compare
PS417_11680 -0.8 -2.4 MFS transporter compare
PS417_15915 -0.8 -0.8 hypothetical protein compare
PS417_08350 -0.7 -1.7 preprotein translocase subunit TatD compare
PS417_20715 -0.7 -1.4 cytochrome Cbb3 compare
PS417_04270 -0.7 -4.4 ribonuclease G compare
PS417_23545 -0.7 -0.6 gamma-glutamyl kinase compare
PS417_05510 -0.7 -1.9 alpha/beta hydrolase compare
PS417_11350 -0.7 -2.0 biopolymer transporter ExbB compare
PS417_00755 -0.7 -0.4 biofilm PGA synthesis protein PgaD compare
PS417_03080 -0.7 -1.1 hypothetical protein compare
PS417_08510 -0.7 -1.0 LysR family transcriptional regulator compare
PS417_22245 -0.7 -2.3 leucyl aminopeptidase (aminopeptidase T) compare
PS417_11770 -0.7 -1.0 pyruvate dehydrogenase compare
PS417_02320 -0.7 -2.2 metal ABC transporter ATPase compare
PS417_27660 -0.7 -3.1 multidrug transporter compare
PS417_12660 -0.7 -1.0 hypothetical protein compare
PS417_08045 -0.7 -0.9 uracil permease compare
PS417_17095 -0.7 -1.5 spore coat protein compare
PS417_10335 -0.7 -1.4 peroxiredoxin compare
PS417_16845 -0.7 -1.2 monovalent cation/H+ antiporter subunit E compare
PS417_02340 -0.7 -1.1 LysR family transcriptional regulator compare
PS417_00085 -0.7 -1.0 16S rRNA methyltransferase compare
PS417_05325 -0.7 -1.0 fimbrial protein compare


Specific Phenotypes

For 1 genes in this experiment