Experiment set25IT047 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -9.3 -11.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_0396 -8.1 -7.9 conserved protein of unknown function compare
PP_0395 -7.9 -5.5 putative type IV piliation protein compare
PP_1779 -7.7 -5.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2341 -7.5 -2.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1778 -7.3 -8.7 Lipopolysaccharide ABC export system, permease protein compare
PP_4994 -6.9 -4.6 conserved protein of unknown function compare
PP_1898 -6.7 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_0397 -6.7 -21.8 protein kinase compare
PP_0948 -6.7 -1.3 Phosphocarrier protein HPr compare
PP_0951 -6.6 -10.0 Ribosome hibernation promoting factor compare
PP_4058 -6.2 -11.2 1,4-alpha-glucan branching enzyme compare
PP_0547 -6.2 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4726 -6.1 -3.0 Chaperone protein DnaJ compare
PP_1142 -6.0 -1.2 conserved protein of unknown function compare
PP_0789 -5.8 -4.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5145 -5.8 -12.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4902 -5.7 -3.2 Oligoribonuclease compare
PP_4943 -5.6 -2.5 putative Glycosyl transferase compare
PP_1198 -5.4 -3.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5674 -5.3 -3.1 conserved protein of unknown function compare
PP_0164 -5.1 -9.0 conserved protein of unknown function compare
PP_5309 -5.0 -3.5 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1355 -4.9 -10.9 Muropeptide permease AmpG compare
PP_0406 -4.8 -2.9 Nucleotidyltransferase family protein compare
PP_2145 -4.7 -3.7 beta-N-acetylglucosaminidase compare
PP_1733 -4.7 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_3821 -4.4 -8.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5000 -4.4 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_1410 -4.3 -1.2 conserved protein of unknown function compare
PP_1319 -4.2 -6.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1097 -4.1 -1.1 Methionine--tRNA ligase compare
PP_2378 -4.0 -2.6 Fe/S biogenesis protein NfuA compare
PP_0846 -4.0 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4471 -4.0 -5.8 Magnesium transporter compare
PP_4122 -3.9 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3484 -3.7 -3.7 Response regulator receiver protein compare
PP_5328 -3.7 -2.2 putative phosphate transport system permease protein compare
PP_2820 -3.7 -2.5 HTH-type transcriptional regulator nfxB compare
PP_5327 -3.7 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_4364 -3.7 -3.1 putative Anti-sigma F factor antagonist compare
PP_1994 -3.6 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_5198 -3.6 -3.6 conserved protein of unknown function compare
PP_0405 -3.6 -8.9 conserved protein of unknown function compare
PP_4120 -3.6 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_4942 -3.6 -3.4 conserved protein of unknown function compare
PP_1318 -3.5 -7.1 Cytochrome b compare
PP_4874 -3.5 -1.4 50S ribosomal protein L9 compare
PP_4828 -3.5 -1.4 Precorrin-8X methylmutase compare
PP_4143 -3.5 -3.7 conserved protein of unknown function compare
PP_1734 -3.4 -4.6 Probable septum site-determining protein MinC compare
PP_4271 -3.4 -0.9 conserved protein of unknown function compare
PP_5007 -3.3 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4379 -3.3 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4517 -3.3 -2.0 conserved protein of unknown function compare
PP_5502 -3.3 -2.5 ribosome modulation factor compare
PP_2144 -3.2 -4.3 Transcriptional regulator, TetR family compare
PP_4917 -3.2 -4.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0065 -3.2 -3.5 NAD-binding component of TrK potassium transporter compare
PP_4004 -3.1 -4.3 DNA translocase FtsK compare
PP_4941 -3.1 -7.2 conserved exported protein of unknown function compare
PP_4129 -3.1 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5337 -3.1 -4.9 LysR family transcriptional regulator compare
PP_4880 -3.0 -10.9 exoribonuclease R compare
PP_4342 -2.9 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_0949 -2.8 -5.5 putative ATP-binding protein UPF0042 compare
PP_4124 -2.8 -5.3 NADH-quinone oxidoreductase subunit G compare
PP_0184 -2.7 -4.2 Argininosuccinate lyase compare
PP_0123 -2.7 -7.8 DNA polymerase I, 5 compare
PP_1020 -2.7 -1.7 putative glucose-6-phosphate 1-epimerase compare
PP_3649 -2.7 -3.3 Transcriptional regulator, GntR family compare
PP_1237 -2.6 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1764 -2.6 -2.8 Phosphoglycolate phosphatase 2 compare
PP_4008 -2.6 -5.0 ATP-dependent serine protease compare
PP_0585 -2.5 -1.5 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0832 -2.5 -4.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5095 -2.5 -1.0 pyrroline-5-carboxylate reductase compare
PP_5514 -2.5 -2.1 conserved protein of unknown function compare
PP_4804 -2.5 -1.7 RlpA-like lipoprotein compare
PP_2433 -2.5 -1.6 conserved protein of unknown function compare
PP_1036 -2.5 -6.1 membrane-bound lytic murein transglycosylase F compare
PP_1088 -2.5 -6.0 Argininosuccinate synthase compare
PP_1783 -2.5 -1.5 dTDP-glucose pyrophosphorylase compare
PP_4895 -2.5 -1.7 tRNA dimethylallyltransferase compare
PP_2217 -2.5 -1.7 enoyl-CoA hydratase compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_0185 -2.4 -6.5 Positive alginate biosynthesis regulatory protein compare
PP_1268 -2.4 -2.1 putative HtrA suppressor protein sohA compare
PP_1099 -2.4 -1.6 Cold shock protein CapB compare
PP_4892 -2.4 -5.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5310 -2.3 -4.7 junction-specific ATP-dependent DNA helicase compare
PP_4824 -2.3 -6.7 Sensor histidine kinase/response regulator compare
PP_0435 -2.3 -6.3 Peptidase, M23/M37 family compare
PP_5500 -2.3 -1.9 protein of unknown function compare
PP_4204 -2.3 -4.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1217 -2.3 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5533 -2.2 -1.4 conserved protein of unknown function compare
PP_0214 -2.2 -5.1 4-aminobutyrate aminotransferase compare
PP_1216 -2.2 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4981 -2.1 -2.0 polyisoprene-binding protein, acidic stress response factor compare
PP_4940 -2.1 -3.6 Putative glycosyltransferase compare
PP_5058 -2.1 -3.4 Carboxy-terminal-processing protease compare
PP_2475 -2.1 -2.8 Transcriptional regulator, TetR family compare
PP_0126 -2.0 -2.0 Cytochrome c4 compare
PP_2029 -2.0 -1.5 von Willebrand factor type A domain protein compare
PP_5093 -2.0 -0.8 twitching motility protein compare
PP_1058 -2.0 -8.6 conserved protein of unknown function compare
PP_2088 -2.0 -1.6 RNA polymerase sigma factor SigX compare
PP_5217 -1.9 -7.4 Polyphosphate kinase compare
PP_4936 -1.9 -4.0 O-antigen polymerase compare
PP_5185 -1.9 -3.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1041 -1.9 -1.0 twin arginine protein export complex subunit compare
PP_4560 -1.9 -1.3 putative Ribonuclease BN compare
PP_0833 -1.9 -1.1 queuine tRNA-ribosyltransferase compare
PP_1906 -1.9 -2.2 ribosomal large subunit pseudouridine synthase C compare
PP_0434 -1.9 -2.4 Anhydro-N-acetylmuramic acid kinase compare
PP_0001 -1.9 -1.2 probable chromosome-partitioning protein compare
PP_5701 -1.9 -1.6 conserved protein of unknown function compare
PP_4785 -1.8 -3.0 conserved exported protein of unknown function compare
PP_4738 -1.8 -1.5 conserved exported protein of unknown function compare
PP_4944 -1.8 -2.3 Carbamoyltransferase compare
PP_0881 -1.8 -2.8 dipeptide ABC transporter - putative membrane subunit compare
PP_4370 -1.8 -1.8 Flagellar hook-basal body complex protein FliE compare
PP_2348 -1.8 -3.6 Sensor histidine kinase compare
PP_3378 -1.7 -1.5 putative 2-ketogluconokinase compare
PP_0872 -1.7 -3.8 Peptide chain release factor 3 compare
PP_4696 -1.7 -2.8 Nitrogen regulation protein NR(I) compare
PP_4121 -1.7 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_0127 -1.7 -2.9 Thiol:disulfide interchange protein compare
PP_4296 -1.7 -1.0 conserved exported protein of unknown function compare
PP_2371 -1.7 -3.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4993 -1.7 -3.3 Glutathione synthetase compare
PP_3730 -1.7 -1.3 Transcriptional regulatory protein AruR compare
PP_5230 -1.7 -1.6 Tyrosine recombinase XerC compare
PP_1493 -1.7 -1.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4133 -1.6 -1.7 Transcriptional regulator-related protein compare
PP_2439 -1.6 -3.5 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_1054 -1.6 -0.9 Type II secretion pathway protein XcpZ compare
PP_1609 -1.6 -0.9 conserved protein of unknown function compare
PP_1562 -1.6 -1.5 putative Phage terminase, small subunit compare
PP_3043 -1.6 -1.3 conserved protein of unknown function compare
PP_4362 -1.6 -1.6 conserved protein of unknown function compare
PP_4261 -1.6 -2.9 cation-transporting P-type ATPase compare
PP_4130 -1.6 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5557 -1.6 -1.6 protein of unknown function compare
PP_1428 -1.6 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_4394 -1.6 -2.8 flagella basal body P-ring formation protein compare
PP_4060 -1.6 -5.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4505 -1.6 -3.3 Sensor histidine kinase compare
PP_2121 -1.5 -1.2 putative Lipoprotein compare
PP_1206 -1.5 -3.5 basic-amino-acid specific porin OprD compare
PP_4131 -1.5 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_t12 -1.5 -0.7 tRNA-Thr compare
PP_2032 -1.5 -2.9 putative ATPase compare
PP_5146 -1.5 -3.3 RNA pyrophosphohydrolase compare
PP_2646 -1.5 -1.5 conserved protein of unknown function compare
PP_1575 -1.5 -1.5 conserved protein of unknown function compare
PP_1214 -1.5 -1.3 putative transcriptional regulatory protein compare
PP_2302 -1.5 -2.5 DNA-binding, ATP-dependent protease compare
PP_0339 -1.5 -1.0 Pyruvate dehydrogenase E1 component compare
PP_2370 -1.5 -1.4 conserved protein of unknown function compare
PP_2327 -1.4 -2.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5329 -1.4 -2.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1215 -1.4 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_1629 -1.4 -3.0 Protein RecA compare
PP_5654 -1.4 -1.3 putative phosphotriesterase compare
PP_4369 -1.4 -4.0 Flagellar M-ring protein compare
PP_0250 -1.4 -1.3 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0938 -1.4 -4.4 conserved protein of unknown function compare
PP_2322 -1.4 -3.2 Major outer membrane lipoprotein compare
PP_1739 -1.4 -1.5 conserved membrane protein of unknown function compare
PP_5216 -1.4 -1.5 exopolyphosphatase compare
PP_5143 -1.4 -2.0 conserved membrane protein of unknown function compare
PP_0236 -1.4 -1.3 NAD(P)H-dependent FMN reductase subunit compare
PP_0855 -1.4 -1.6 conserved protein of unknown function compare
PP_1774 -1.4 -1.7 conserved exported protein of unknown function compare
PP_1346 -1.4 -1.6 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_0082 -1.4 -2.4 tryptophan synthase alpha chain compare
PP_2379 -1.4 -2.4 putative cytochrome oxidase biogenesis protein compare
PP_2285 -1.4 -2.2 conserved exported protein of unknown function compare
PP_4066 -1.4 -2.1 methylglutaconyl-CoA hydratase compare
PP_1548 -1.4 -1.8 conserved protein of unknown function compare
PP_5063 -1.3 -3.0 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_5483 -1.3 -1.4 conserved protein of unknown function compare
PP_5084 -1.3 -3.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_3899 -1.3 -1.7 conserved protein of unknown function, hicB family compare
PP_1702 -1.3 -2.3 Recombination-associated protein RdgC compare
PP_1224 -1.3 -2.9 periplasmic subunit of the TolQRA transport system compare
PP_3833 -1.3 -2.6 Response regulator compare
PP_2328 -1.3 -2.0 Phosphoadenosine phosphosulfate reductase compare
PP_5045 -1.3 -2.3 tRNA sulfurtransferase compare
PP_5191 -1.3 -0.8 conserved exported protein of unknown function compare
PP_4355 -1.3 -1.3 flagellar export apparatus subunit compare
PP_4329 -1.3 -1.1 FlhB domain protein compare
PP_0232 -1.3 -1.0 ATP-binding taurine transporter subunit compare
PP_2152 -1.3 -1.1 glycerophosphoryl diester phosphodiesterase compare
PP_1729 -1.3 -0.9 conserved protein of unknown function compare
PP_4126 -1.2 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_4260 -1.2 -1.5 conserved protein of unknown function compare
PP_2773 -1.2 -1.4 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs across organisms