Experiment set25IT046 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1655 +2.9 9.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 +2.5 7.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_3098 +1.7 2.1 conserved protein of unknown function compare
PP_1353 +1.6 1.7 conserved membrane protein of unknown function compare
PP_1554 +1.5 4.3 conserved protein of unknown function compare
PP_5324 +1.5 2.2 Response regulator compare
PP_3241 +1.4 1.7 conserved exported protein of unknown function compare
PP_2107 +1.4 2.2 conserved protein of unknown function compare
PP_0022 +1.3 1.5 hypothetical protein compare
PP_3876 +1.3 3.5 conserved protein of unknown function compare
PP_4952 +1.3 2.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2633 +1.3 1.9 conserved protein of unknown function compare
PP_1038 +1.3 2.7 conserved protein of unknown function compare
PP_2880 +1.3 2.3 Transcriptional regulator, TetR family compare
PP_3339 +1.3 2.8 conserved exported protein of unknown function compare
PP_5705 +1.3 3.0 protein of unknown function compare
PP_1650 +1.3 10.5 Sensor protein GacS compare
PP_2442 +1.3 2.8 conserved protein of unknown function, DUF480 family compare
PP_2070 +1.2 1.4 Transcriptional regulator, AraC family compare
PP_3762 +1.2 3.9 Response regulator compare
PP_4373 +1.2 7.3 Transcriptional regulator FleQ compare
PP_0874 +1.2 2.8 conserved protein of unknown function compare
PP_3904 +1.2 3.5 conserved protein of unknown function compare
PP_1410 +1.2 1.5 conserved protein of unknown function compare
PP_1548 +1.2 1.3 conserved protein of unknown function compare
PP_5485 +1.2 3.3 putative N-acetyltransferase, GNAT domain compare
PP_3792 +1.2 3.5 conserved protein of unknown function compare
PP_3808 +1.1 2.2 Antibiotic synthesis protein MbtH compare
PP_3411 +1.1 0.7 conserved protein of unknown function compare
PP_0916 +1.1 2.6 Amino acid transporter LysE compare
PP_5704 +1.1 2.1 conserved protein of unknown function compare
PP_1742 +1.1 2.9 conserved inner membrane protein of unknown function compare
PP_4099 +1.1 7.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4156 +1.1 1.9 Transcriptional regulator, LysR family compare
PP_5453 +1.1 1.6 conserved protein of unknown function compare
PP_5073 +1.1 2.0 conserved exported protein of unknown function compare
PP_2499 +1.1 1.7 conserved protein of unknown function compare
PP_0801 +1.1 1.3 conserved exported protein of unknown function compare
PP_5017 +1.0 1.1 Sec-independent protein translocase protein TatB compare
PP_1575 +1.0 1.7 conserved protein of unknown function compare
PP_3938 +1.0 2.0 conserved protein of unknown function compare
PP_5610 +1.0 2.0 protein of unknown function compare
PP_1489 +1.0 2.3 CheW domain protein compare
PP_0593 +1.0 0.9 putative ribosome-binding factor compare
PP_3880 +1.0 1.5 conserved exported protein of unknown function compare
PP_4630 +1.0 2.7 Transcriptional regulator, MerR family compare
PP_5571 +1.0 1.2 conserved protein of unknown function compare
PP_4196 +1.0 1.3 conserved exported protein of unknown function compare
PP_3034 +1.0 2.9 putative Regulator protein compare
PP_4329 +1.0 1.4 FlhB domain protein compare
PP_3043 +1.0 1.7 conserved protein of unknown function compare
PP_t12 +1.0 0.8 tRNA-Thr compare
PP_1466 +0.9 1.7 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2773 +0.9 1.8 conserved protein of unknown function compare
PP_2668 +0.9 1.6 ABC efflux transporter, ATP-binding protein compare
PP_5121 +0.9 2.1 conserved exported protein of unknown function compare
PP_0959 +0.9 1.1 phospholipid ABC transporter compare
PP_4482 +0.9 1.5 Transcriptional regulator, AraC family compare
PP_4818 +0.9 2.6 ribosomal protein L11 methyltransferase compare
PP_1454 +0.9 1.5 conserved protein of unknown function compare
PP_2970 +0.9 1.5 conserved exported protein of unknown function compare
PP_4273 +0.9 1.2 Transcriptional regulator, MerR family compare
PP_0048 +0.9 1.1 conserved protein of unknown function compare
PP_2191 +0.9 3.6 putative Lipoprotein compare
PP_2060 +0.9 1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2306 +0.9 1.8 conserved exported protein of unknown function compare
PP_0821 +0.9 1.1 conserved exported protein of unknown function compare
PP_3892 +0.9 1.0 conserved protein of unknown function compare
PP_5223 +0.9 2.7 regulator of nucleotide diphosphokinase compare
PP_5393 +0.9 1.2 putative metal-binding chaperone compare
PP_2121 +0.9 1.5 putative Lipoprotein compare
PP_2003 +0.9 1.9 conserved protein of unknown function compare
PP_1051 +0.9 2.9 Type II secretion pathway protein XcpV compare
PP_3580 +0.9 1.5 conserved protein of unknown function compare
PP_0750 +0.8 1.6 conserved protein of unknown function compare
PP_4914 +0.8 1.9 putative phytase-like protein compare
PP_4532 +0.8 1.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_t49 +0.8 2.0 tRNA-Met compare
PP_4817 +0.8 1.9 MaoC domain protein compare
PP_0064 +0.8 1.3 conserved protein of unknown function compare
PP_3116 +0.8 2.0 transcriptional repressor compare
PP_0283 +0.8 2.1 Arginine/ornithine transport ATP-binding protein AotP compare
PP_0168 +0.8 6.8 putative surface adhesion protein compare
PP_1199 +0.8 3.4 toxin-antitoxin system, higB toxin like compare
PP_5712 +0.8 1.9 conserved protein of unknown function compare
PP_0001 +0.8 0.9 probable chromosome-partitioning protein compare
PP_0166 +0.8 5.6 HlyD family secretion protein compare
PP_3117 +0.8 1.0 putative protein involved in error-prone processing of DNA lesions compare
PP_2824 +0.8 2.9 Transcriptional regulator, TetR family compare
PP_3773 +0.8 1.3 conserved protein of unknown function compare
PP_5499 +0.8 2.1 conserved protein of unknown function compare
PP_1922 +0.8 1.4 conserved protein of unknown function compare
PP_5241 +0.8 1.1 DNA-binding response regulator, LuxR family compare
PP_0566 +0.8 0.7 translation-related factor compare
PP_1071 +0.8 2.9 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_2232 +0.8 1.8 XRE family transcriptional regulator compare
PP_1176 +0.8 1.2 conserved protein of unknown function compare
PP_4223 +0.8 1.1 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3519 +0.8 0.8 putative Lipoprotein compare
PP_2337 +0.8 1.0 aconitate isomerase compare
PP_1820 +0.8 2.4 Benzoate transport protein compare
PP_0145 +0.8 2.1 Na+/Pi-cotransporter compare
PP_1218 +0.8 1.6 putative acyl-CoA thioesterase compare
PP_3404 +0.8 2.7 conserved protein of unknown function compare
PP_1716 +0.8 0.9 Transcriptional regulator, Cro/CI family compare
PP_2256 +0.8 2.9 Transcriptional regulator, Cro/CI family compare
PP_1076 +0.7 1.3 aquaglyceroporin compare
PP_2253 +0.7 0.9 Transcriptional regulator, GntR family compare
PP_4691 +0.7 1.7 sugar fermentation stimulation protein A compare
PP_3064 +0.7 1.7 Phage tail protein compare
PP_4504 +0.7 0.5 conserved exported protein of unknown function compare
PP_5717 +0.7 0.6 conserved protein of unknown function compare
PP_2729 +0.7 2.2 conserved protein of unknown function compare
PP_0711 +0.7 1.1 putative hydrolase compare
PP_5359 +0.7 1.1 CobW/P47K family protein compare
PP_0132 +0.7 2.5 Alginate biosynthesis sensor protein KinB compare
PP_1012 +0.7 1.7 DNA-binding response regulator compare
PP_5520 +0.7 2.3 conserved protein of unknown function compare
PP_3693 +0.7 2.5 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0787 +0.7 1.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3565 +0.7 2.7 Transporter, LysE family compare
PP_2245 +0.7 2.2 Transcriptional regulator, Cro/CI family compare
PP_2836 +0.7 1.6 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_0025 +0.7 0.7 hypothetical protein compare
PP_0632 +0.7 1.7 leader peptidase/N-methyltransferase compare
PP_5243 +0.7 2.2 putative hydrolase compare
PP_1521 +0.7 1.8 conserved protein of unknown function compare
PP_1269 +0.7 0.7 Universal stress protein family compare
PP_0941 +0.7 2.7 putative ribosome associated protein compare
PP_1242 +0.7 2.4 conserved protein of unknown function compare
PP_2073 +0.7 0.9 Acetyltransferase, GNAT family compare
PP_4707 +0.7 1.5 OsmY-related protein compare
PP_1824 +0.7 1.1 Smr domain protein compare
PP_0167 +0.7 5.4 Toxin secretion ATP-binding protein compare
PP_5429 +0.7 2.1 protein of unknown function compare
PP_1632 +0.7 0.8 conserved protein of unknown function compare
PP_1055 +0.7 0.7 Type II secretion pathway protein GspN compare
PP_2791 +0.7 2.3 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_3447 +0.7 0.9 conserved membrane protein of unknown function compare
PP_1982 +0.7 1.7 small heat shock protein IbpA compare
PP_5621 +0.7 1.3 protein of unknown function compare
PP_2705 +0.7 2.7 conserved protein of unknown function compare
PP_3899 +0.7 1.3 conserved protein of unknown function, hicB family compare
PP_2750 +0.7 1.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2900 +0.7 1.0 conserved protein of unknown function compare
PP_4409 +0.7 2.0 Site-specific recombinase, phage integrase family compare
PP_5052 +0.7 1.0 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_5008 +0.7 1.0 Poly granule-associated protein compare
PP_3398 +0.7 0.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3449 +0.7 1.5 conserved exported protein of unknown function compare
PP_5298 +0.7 1.5 putative glutamine amidotransferase compare
PP_3419 +0.7 2.3 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_5427 +0.7 2.0 conserved exported protein of unknown function compare
PP_3701 +0.7 2.2 conserved protein of unknown function compare
PP_1967 +0.7 2.2 tRNA D-aminoacylase compare
PP_5612 +0.7 2.0 protein of unknown function compare
PP_1790 +0.7 1.4 putative Acylneuraminate cytidylyltransferase compare
PP_0886 +0.7 1.3 conserved exported protein of unknown function compare
PP_1713 +0.7 1.1 Transcriptional regulator PcaQ compare
PP_4616 +0.7 1.3 conserved protein of unknown function compare
PP_4217 +0.7 5.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4580 +0.7 1.9 conserved protein of unknown function compare
PP_1115 +0.7 3.4 putative Lipoprotein compare
PP_2516 +0.7 2.8 HTH-type transcriptional regulator GalR compare
PP_2401 +0.7 2.4 conserved membrane protein of unknown function compare
PP_1512 +0.7 0.9 conserved protein of unknown function compare
PP_1013 +0.7 1.7 Sensor histidine kinase compare
PP_3866 +0.7 1.6 conserved protein of unknown function compare
PP_2715 +0.7 1.2 ArsH protein compare
PP_4957 +0.6 1.7 conserved protein of unknown function compare
PP_0181 +0.6 1.4 conserved protein of unknown function compare
PP_3756 +0.6 2.2 TetR family transcriptional regulator compare
PP_5339 +0.6 1.1 transcriptional regulator, ornithine utilization compare
PP_2254 +0.6 2.5 Transcriptional regulator, GntR family compare
PP_0900 +0.6 1.7 PAP2 family protein compare
PP_0165 +0.6 4.2 GGDEF domain protein compare
PP_4982 +0.6 1.6 putative cytochrome b561, iron-regulated compare
PP_3423 +0.6 3.0 Type II secretion pathway protein XcpT compare
PP_5000 +0.6 0.6 peptidase component of the ATP-dependent HslVU protease compare
PP_1519 +0.6 2.0 putative Lipoprotein compare
PP_5322 +0.6 1.9 putative metal ion transporter compare
PP_4531 +0.6 0.9 conserved exported protein of unknown function compare
PP_1755 +0.6 2.1 fumarate hydratase (class 2) compare
PP_0508 +0.6 0.6 conserved exported protein of unknown function compare
PP_3444 +0.6 1.7 Glyoxalase family protein compare
PP_0563 +0.6 2.4 Response regulator compare
PP_3614 +0.6 1.2 conserved membrane protein of unknown function compare
PP_5695 +0.6 1.3 conserved protein of unknown function compare
PP_4349 +0.6 1.9 conserved protein of unknown function compare
PP_0327 +0.6 2.2 formyltetrahydrofolate deformylase compare
PP_0398 +0.6 0.9 Thiosulfate sulfurtransferase GlpE compare
PP_4590 +0.6 2.3 conserved protein of unknown function compare
PP_0703 +0.6 1.0 putative Transmembrane sensor compare
PP_1999 +0.6 0.6 membrane protein required for colicin V production compare
PP_1679 +0.6 1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3637 +0.6 0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5691 +0.6 2.4 conserved protein of unknown function compare
PP_4225 +0.6 1.2 two component system DNA-binding transcriptional activator QseB compare
PP_5605 +0.6 2.0 conserved exported protein of unknown function compare
PP_4627 +0.6 1.2 transcriptional regulator, LysR family compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs across organisms