Experiment set25IT035 for Pseudomonas simiae WCS417

Compare to:

P. simiae OR Antrim MOI 0.1

200 most important genes:

  gene name fitness t score description  
PS417_17645 -5.1 -2.3 RND transporter compare
PS417_12355 -4.6 -2.4 magnesium chelatase compare
PS417_19630 -4.4 -2.6 LuxR family transcriptional regulator compare
PS417_20585 -4.1 -6.8 chemotaxis protein compare
PS417_21625 -4.0 -1.1 DNA-binding protein compare
PS417_19625 -3.9 -3.8 histidine kinase compare
PS417_02210 -3.6 -6.3 diguanylate cyclase compare
PS417_08220 -3.3 -0.9 epimerase compare
PS417_27870 -3.0 -2.0 ATP-dependent DNA helicase RecG compare
PS417_05985 -2.9 -2.6 chemotaxis protein CheY compare
PS417_14655 -2.8 -1.1 lysine transporter LysE compare
PS417_18310 -2.8 -1.3 hypothetical protein compare
PS417_23580 -2.8 -1.0 peptidylprolyl isomerase compare
PS417_03930 -2.6 -3.3 thymidine phosphorylase compare
PS417_06245 -2.6 -1.4 zinc metallopeptidase RseP compare
PS417_24500 -2.6 -3.0 DEAD/DEAH box helicase compare
PS417_23950 -2.6 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_01920 -2.5 -0.9 ATP-dependent protease subunit HslV compare
PS417_16555 -2.5 -1.6 cupin compare
PS417_26850 -2.5 -0.9 twin-arginine translocation pathway signal protein compare
PS417_09695 -2.4 -2.4 hydrolase compare
PS417_24275 -2.4 -15.1 diguanylate phosphodiesterase compare
PS417_02555 -2.4 -12.2 exoribonuclease R compare
PS417_26900 -2.3 -2.0 L-cystine transporter tcyP compare
PS417_00650 -2.2 -1.0 LysR family transcriptional regulator compare
PS417_19425 -2.1 -1.0 allantoicase compare
PS417_16490 -2.1 -1.1 cell division protein FtsK compare
PS417_19600 -2.1 -1.3 exonuclease compare
PS417_27795 -2.0 -0.5 orotate phosphoribosyltransferase compare
PS417_19635 -2.0 -7.2 lipid kinase compare
PS417_14515 -1.9 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_17000 -1.8 -2.8 MerR family transcriptional regulator compare
PS417_04515 -1.8 -4.3 peptidase M48 compare
PS417_08590 -1.8 -2.0 hypothetical protein compare
PS417_24705 -1.7 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_27585 -1.7 -1.3 diaminopimelate epimerase compare
PS417_07095 -1.7 -6.3 histidine kinase compare
PS417_27515 -1.6 -3.4 heme biosynthesis protein HemY compare
PS417_16080 -1.6 -1.6 AraC family transcriptional regulator compare
PS417_04380 -1.6 -0.7 ABC transporter permease compare
PS417_03260 -1.6 -0.6 5S ribosomal RNA compare
PS417_04410 -1.6 -2.2 hypothetical protein compare
PS417_01550 -1.5 -3.2 cell envelope biogenesis protein AsmA compare
PS417_00630 -1.5 -3.4 nitrate ABC transporter substrate-binding protein compare
PS417_19095 -1.5 -1.2 hypothetical protein compare
PS417_10010 -1.5 -2.7 Replication protein P compare
PS417_02175 -1.5 -2.1 transcriptional regulator compare
PS417_02225 -1.5 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26175 -1.5 -0.7 sarcosine oxidase subunit gamma compare
PS417_01290 -1.4 -1.5 ADP-ribose diphosphatase compare
PS417_04595 -1.4 -1.2 cell division protein MraZ compare
PS417_05785 -1.4 -2.5 tail protein compare
PS417_20665 -1.4 -4.8 hypothetical protein compare
PS417_13510 -1.3 -0.8 polyketide cyclase compare
PS417_23205 -1.3 -1.8 transcriptional regulator compare
PS417_15780 -1.3 -1.6 membrane protein compare
PS417_18545 -1.3 -1.3 cell division protein compare
PS417_20670 -1.3 -4.6 glycosyl transferase family 2 compare
PS417_19805 -1.3 -2.5 flagellar M-ring protein FliF compare
PS417_08365 -1.3 -0.9 hypothetical protein compare
PS417_00625 -1.3 -3.0 taurine dioxygenase compare
PS417_22060 -1.3 -0.8 hypothetical protein compare
PS417_07985 -1.3 -1.2 AbrB family transcriptional regulator compare
PS417_17240 -1.3 -1.5 trigger factor compare
PS417_01645 -1.2 -2.2 cupin compare
PS417_04500 -1.2 -0.8 hypothetical protein compare
PS417_20055 -1.2 -2.5 cob(II)yrinic acid a,c-diamide reductase compare
PS417_14280 -1.2 -1.6 hypothetical protein compare
PS417_22745 -1.2 -4.8 hypothetical protein compare
PS417_15085 -1.2 -2.5 ATPase AAA compare
PS417_03100 -1.2 -1.0 pilus assembly protein compare
PS417_08410 -1.2 -1.0 hypothetical protein compare
PS417_24615 -1.2 -1.0 hypothetical protein compare
PS417_14940 -1.2 -1.0 LysR family transcriptional regulator compare
PS417_20705 -1.2 -3.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_14590 -1.2 -1.2 LysR family transcriptional regulator compare
PS417_09470 -1.2 -0.7 hypothetical protein compare
PS417_02740 -1.2 -1.1 LysR family transcriptional regulator compare
PS417_26565 -1.2 -2.3 LysR family transcriptional regulator compare
PS417_12110 -1.2 -1.3 ATP-binding protein compare
PS417_22630 -1.1 -1.7 hypothetical protein compare
PS417_13305 -1.1 -0.9 hypothetical protein compare
PS417_19800 -1.1 -1.4 flagellar motor switch protein FliG compare
PS417_18930 -1.1 -1.0 restriction endonuclease subunit S compare
PS417_19645 -1.1 -1.7 chemotaxis protein compare
PS417_23825 -1.1 -3.6 penicillin-binding protein compare
PS417_16750 -1.1 -1.6 ABC transporter ATP-binding protein compare
PS417_27460 -1.1 -3.2 hypothetical protein compare
PS417_02695 -1.1 -1.1 protein hupE compare
PS417_06045 -1.1 -1.4 membrane protein compare
PS417_08250 -1.1 -1.1 competence protein ComEA compare
PS417_04090 -1.1 -2.5 hypothetical protein compare
PS417_01310 -1.1 -2.0 ATPase compare
PS417_12515 -1.1 -1.7 lactate dehydrogenase compare
PS417_12740 -1.1 -1.9 secretion protein HlyD compare
PS417_11810 -1.1 -1.9 oxidoreductase compare
PS417_04315 -1.1 -2.4 superoxide dismutase compare
PS417_23855 -1.1 -1.1 ABC transporter substrate-binding protein compare
PS417_06600 -1.0 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27935 -1.0 -0.8 type VI secretion protein compare
PS417_23900 -1.0 -4.1 poly(A) polymerase compare
PS417_03920 -1.0 -2.1 dephospho-CoA kinase compare
PS417_14985 -1.0 -2.3 Fe-S protein compare
PS417_18990 -1.0 -2.2 membrane protein compare
PS417_12245 -1.0 -2.6 GNAT family acetyltransferase compare
PS417_15105 -1.0 -3.0 membrane protein compare
PS417_16275 -1.0 -1.8 hypothetical protein compare
PS417_21915 -1.0 -1.8 LysR family transcriptional regulator compare
PS417_18705 -1.0 -3.6 succinate dehydrogenase compare
PS417_03155 -1.0 -2.1 transcriptional regulator compare
PS417_14240 -1.0 -1.7 isochorismatase compare
PS417_26985 -1.0 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24655 -1.0 -2.3 hypothetical protein compare
PS417_23210 -1.0 -1.3 serine acetyltransferase compare
PS417_07560 -1.0 -1.0 universal stress protein UspA compare
PS417_18010 -1.0 -1.5 acid phosphatase compare
PS417_16775 -1.0 -1.4 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_20205 -1.0 -2.8 LysR family transcriptional regulator compare
PS417_11060 -1.0 -1.7 transporter compare
PS417_08135 -1.0 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15030 -1.0 -0.9 short-chain dehydrogenase compare
PS417_02255 -1.0 -1.1 lipopolysaccharide kinase compare
PS417_26050 -1.0 -3.3 response regulator compare
PS417_11300 -1.0 -2.0 general secretion pathway protein GspE compare
PS417_09460 -1.0 -1.6 alkanesulfonate monooxygenase compare
PS417_22005 -1.0 -1.9 epimerase compare
PS417_09235 -1.0 -0.6 molecular chaperone compare
PS417_01600 -1.0 -2.2 peptidase M23 compare
PS417_03495 -0.9 -1.3 type III secretory protein EscS compare
PS417_17840 -0.9 -1.1 betaine-aldehyde dehydrogenase compare
PS417_01115 -0.9 -1.1 serine acetyltransferase compare
PS417_11820 -0.9 -1.6 histidine kinase compare
PS417_09865 -0.9 -0.8 hypothetical protein compare
PS417_27950 -0.9 -2.9 hypothetical protein compare
PS417_27865 -0.9 -1.4 LysR family transcriptional regulator compare
PS417_13075 -0.9 -1.0 hypothetical protein compare
PS417_26230 -0.9 -2.2 electron transfer flavoprotein subunit alpha compare
PS417_12560 -0.9 -3.1 MFS transporter compare
PS417_26990 -0.9 -0.3 RNA pyrophosphohydrolase compare
PS417_26345 -0.9 -2.2 choline dehydrogenase compare
PS417_09245 -0.9 -1.0 recombinase RdgC compare
PS417_02720 -0.9 -0.6 TetR family transcriptional regulator compare
PS417_05960 -0.9 -2.1 chemotaxis protein compare
PS417_17855 -0.9 -1.7 major facilitator transporter compare
PS417_13145 -0.9 -1.5 50S ribosomal protein L21 compare
PS417_16475 -0.9 -1.9 camphor resistance protein CrcB compare
PS417_09300 -0.9 -1.7 peptidylprolyl isomerase compare
PS417_23215 -0.9 -2.0 RNA methyltransferase compare
PS417_26390 -0.9 -1.3 acyltransferase compare
PS417_13555 -0.9 -2.8 ABC transporter permease compare
PS417_19065 -0.9 -0.6 monooxygenase compare
PS417_27085 -0.9 -1.3 AraC family transcriptional regulator compare
PS417_28515 -0.9 -1.1 16S rRNA methyltransferase compare
PS417_17190 -0.9 -2.0 MarR family transcriptional regulator compare
PS417_13730 -0.9 -0.8 hypothetical protein compare
PS417_27110 -0.9 -1.5 spermidine/putrescine ABC transporter permease compare
PS417_23820 -0.9 -2.4 hypothetical protein compare
PS417_20575 -0.9 -3.6 ATP-dependent helicase HrpA compare
PS417_03075 -0.8 -1.6 hypothetical protein compare
PS417_11390 -0.8 -1.6 LysR family transcriptional regulator compare
PS417_01105 -0.8 -2.7 cystine transporter subunit compare
PS417_15770 -0.8 -0.7 pyridoxine 5'-phosphate oxidase compare
PS417_27180 -0.8 -1.2 peroxidase compare
PS417_13885 -0.8 -1.2 chemotaxis protein CheY compare
PS417_05500 -0.8 -0.9 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_10095 -0.8 -0.9 hypothetical protein compare
PS417_20715 -0.8 -1.6 cytochrome Cbb3 compare
PS417_04975 -0.8 -2.3 response regulator receiver protein compare
PS417_17560 -0.8 -2.0 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_11305 -0.8 -2.0 general secretion pathway protein GspF compare
PS417_01715 -0.8 -0.7 hypothetical protein compare
PS417_07640 -0.8 -1.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05860 -0.8 -1.7 hypothetical protein compare
PS417_25030 -0.8 -1.5 hypothetical protein compare
PS417_14850 -0.8 -1.0 hypothetical protein compare
PS417_14105 -0.8 -1.2 6-O-methylguanine DNA methyltransferase compare
PS417_26685 -0.8 -1.6 hypothetical protein compare
PS417_13575 -0.8 -1.2 succinylglutamate desuccinylase compare
PS417_19125 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_00585 -0.8 -2.6 CoA-transferase compare
PS417_20025 -0.8 -0.8 alpha-ribazole phosphatase compare
PS417_18860 -0.8 -3.3 transcriptional regulator compare
PS417_20655 -0.8 -3.4 group 1 glycosyl transferase compare
PS417_18070 -0.8 -0.6 general secretion pathway protein GspH compare
PS417_05820 -0.8 -1.2 recombinase RecX compare
PS417_11185 -0.8 -0.9 dimethylallyltransferase compare
PS417_24605 -0.8 -1.3 thiamine-phosphate pyrophosphorylase compare
PS417_15090 -0.8 -1.1 hypothetical protein compare
PS417_20855 -0.8 -0.4 hypothetical protein compare
PS417_19615 -0.8 -2.5 chemotaxis protein CheW compare
PS417_20155 -0.8 -2.5 23S rRNA methyltransferase compare
PS417_07010 -0.8 -1.0 pseudouridine synthase compare
PS417_24460 -0.8 -1.3 hypothetical protein compare
PS417_14840 -0.8 -1.6 abortive phage infection protein compare
PS417_08545 -0.8 -1.0 aromatic ring-opening dioxygenase LigB compare
PS417_09210 -0.8 -0.6 TetR family transcriptional regulator compare
PS417_22700 -0.8 -1.2 RNA polymerase subunit sigma-24 compare
PS417_11175 -0.8 -0.9 AraC family transcriptional regulator compare
PS417_27815 -0.8 -0.8 hypothetical protein compare
PS417_18095 -0.8 -1.8 iron-dicitrate transporter subunit FecD compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in phage experiments