Experiment set25IT034 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -9.7 -14.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_0396 -7.5 -7.3 conserved protein of unknown function compare
PP_0395 -7.4 -5.1 putative type IV piliation protein compare
PP_1778 -7.3 -5.0 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 -6.8 -6.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0397 -6.0 -20.6 protein kinase compare
PP_5145 -5.9 -13.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0547 -5.8 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4143 -5.6 -6.2 conserved protein of unknown function compare
PP_1198 -5.5 -5.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4902 -5.3 -3.7 Oligoribonuclease compare
PP_4008 -5.3 -8.1 ATP-dependent serine protease compare
PP_0164 -5.1 -9.3 conserved protein of unknown function compare
PP_4058 -4.9 -12.3 1,4-alpha-glucan branching enzyme compare
PP_0951 -4.6 -8.9 Ribosome hibernation promoting factor compare
PP_1734 -4.5 -3.1 Probable septum site-determining protein MinC compare
PP_0406 -4.4 -3.0 Nucleotidyltransferase family protein compare
PP_4994 -4.2 -4.7 conserved protein of unknown function compare
PP_2145 -4.2 -4.1 beta-N-acetylglucosaminidase compare
PP_3946 -4.2 -2.2 HTH-type transcriptional repressor NicR compare
PP_4379 -3.8 -4.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1733 -3.8 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_2433 -3.8 -2.7 conserved protein of unknown function compare
PP_1237 -3.8 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5289 -3.7 -4.5 Acetylglutamate kinase compare
PP_0846 -3.6 -2.3 DnaK-like molecular chaperone specific for IscU compare
PP_0065 -3.5 -4.2 NAD-binding component of TrK potassium transporter compare
PP_4122 -3.5 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1898 -3.5 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1994 -3.2 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_2402 -3.2 -3.1 putative Sensor histidine kinase compare
PP_3649 -3.2 -4.4 Transcriptional regulator, GntR family compare
PP_2378 -3.1 -3.0 Fe/S biogenesis protein NfuA compare
PP_4880 -3.0 -11.1 exoribonuclease R compare
PP_3484 -2.9 -4.2 Response regulator receiver protein compare
PP_5309 -2.9 -6.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4356 -2.9 -2.6 Flagellar protein FliO compare
PP_4726 -2.9 -3.0 Chaperone protein DnaJ compare
PP_4124 -2.9 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_4262 -2.8 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3052 -2.8 -1.8 conserved protein of unknown function compare
PP_0949 -2.8 -6.4 putative ATP-binding protein UPF0042 compare
PP_5185 -2.8 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1317 -2.6 -3.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1319 -2.6 -4.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4098 -2.6 -2.9 UvrABC system protein C compare
PP_1088 -2.6 -8.0 Argininosuccinate synthase compare
PP_0184 -2.5 -5.4 Argininosuccinate lyase compare
PP_0123 -2.5 -9.2 DNA polymerase I, 5 compare
PP_4368 -2.5 -4.6 flagellar motor switch protein compare
PP_4396 -2.5 -3.5 conserved protein of unknown function compare
PP_1355 -2.5 -7.3 Muropeptide permease AmpG compare
PP_4126 -2.5 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_4941 -2.4 -6.9 conserved exported protein of unknown function compare
PP_4964 -2.4 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5217 -2.3 -12.8 Polyphosphate kinase compare
PP_1186 -2.3 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_5216 -2.3 -2.2 exopolyphosphatase compare
PP_0393 -2.3 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4804 -2.3 -1.6 RlpA-like lipoprotein compare
PP_4131 -2.3 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_1629 -2.3 -6.0 Protein RecA compare
PP_5095 -2.2 -1.5 pyrroline-5-carboxylate reductase compare
PP_4120 -2.2 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_1493 -2.2 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0405 -2.2 -7.9 conserved protein of unknown function compare
PP_1783 -2.2 -1.5 dTDP-glucose pyrophosphorylase compare
PP_4370 -2.2 -3.8 Flagellar hook-basal body complex protein FliE compare
PP_5327 -2.1 -3.2 putative phosphate ABC transporter, permease subunit compare
PP_5502 -2.1 -4.0 ribosome modulation factor compare
PP_1528 -2.1 -1.9 conserved protein of unknown function compare
PP_4471 -2.1 -4.4 Magnesium transporter compare
PP_4358 -2.1 -3.7 flagellar synthesis, switching and energizing component compare
PP_0948 -2.0 -1.9 Phosphocarrier protein HPr compare
PP_4129 -2.0 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4337 -2.0 -4.4 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4375 -2.0 -7.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_2144 -1.9 -4.2 Transcriptional regulator, TetR family compare
PP_4367 -1.9 -2.1 Flagellar assembly protein FliH compare
PP_4828 -1.9 -1.6 Precorrin-8X methylmutase compare
PP_5338 -1.9 -2.5 aspartate ammonia-lyase compare
PP_0832 -1.9 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4824 -1.9 -6.7 Sensor histidine kinase/response regulator compare
PP_1217 -1.8 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4352 -1.8 -7.7 flagellin export apparatus, substrate specificity protein compare
PP_4961 -1.8 -2.2 putative Lipoprotein compare
PP_1216 -1.8 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4390 -1.8 -5.1 flagellar basal-body rod protein FlgC compare
PP_4391 -1.8 -5.3 flagellar basal-body rod protein FlgB compare
PP_4353 -1.8 -4.0 Flagellar biosynthetic protein fliR compare
PP_4381 -1.8 -8.7 Flagellar hook-associated protein FlgK compare
PP_5328 -1.8 -2.6 putative phosphate transport system permease protein compare
PP_4942 -1.8 -2.1 conserved protein of unknown function compare
PP_4696 -1.8 -3.9 Nitrogen regulation protein NR(I) compare
PP_4700 -1.7 -1.7 pantothenate synthetase compare
PP_5329 -1.7 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2160 -1.7 -3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4936 -1.7 -4.9 O-antigen polymerase compare
PP_1366 -1.7 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_4376 -1.7 -8.1 flagellar filament capping protein compare
PP_0185 -1.7 -6.5 Positive alginate biosynthesis regulatory protein compare
PP_4354 -1.7 -2.0 flagellar export apparatus subunit compare
PP_2030 -1.7 -4.0 conserved protein of unknown function compare
PP_4394 -1.7 -4.4 flagella basal body P-ring formation protein compare
PP_4341 -1.6 -5.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4378 -1.6 -8.8 flagellin, filament structural protein compare
PP_4344 -1.6 -7.6 flagellar export pore protein compare
PP_5146 -1.6 -4.4 RNA pyrophosphohydrolase compare
PP_4369 -1.6 -5.4 Flagellar M-ring protein compare
PP_2903 -1.5 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3833 -1.5 -2.9 Response regulator compare
PP_1036 -1.5 -5.0 membrane-bound lytic murein transglycosylase F compare
PP_0218 -1.5 -5.4 Sensory box protein compare
PP_4366 -1.5 -9.7 flagellum-specific ATP synthase compare
PP_3487 -1.4 -2.1 conserved exported protein of unknown function compare
PP_4383 -1.4 -4.0 Flagellar P-ring protein compare
PP_0872 -1.4 -4.8 Peptide chain release factor 3 compare
PP_5090 -1.4 -1.4 putative cell division protein compare
PP_4388 -1.4 -8.2 Flagellar hook protein FlgE compare
PP_1058 -1.4 -9.6 conserved protein of unknown function compare
PP_2370 -1.4 -1.9 conserved protein of unknown function compare
PP_2027 -1.4 -4.5 conserved exported protein of unknown function compare
PP_2147 -1.4 -3.6 conserved exported protein of unknown function compare
PP_0435 -1.4 -4.7 Peptidase, M23/M37 family compare
PP_5007 -1.4 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4332 -1.4 -4.5 Chemotaxis protein CheW compare
PP_1362 -1.4 -2.4 pyruvate kinase II compare
PP_5155 -1.4 -2.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4382 -1.4 -4.1 Peptidoglycan hydrolase FlgJ compare
PP_1002 -1.3 -3.1 arginine/ornithine antiporter compare
PP_4342 -1.3 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_2029 -1.3 -1.9 von Willebrand factor type A domain protein compare
PP_0339 -1.3 -0.9 Pyruvate dehydrogenase E1 component compare
PP_4380 -1.3 -8.0 Flagellar hook-associated protein FlgL compare
PP_3916 -1.3 -2.6 conserved protein of unknown function compare
PP_4593 -1.3 -1.8 conserved protein of unknown function compare
PP_4364 -1.3 -3.0 putative Anti-sigma F factor antagonist compare
PP_2337 -1.3 -2.0 aconitate isomerase compare
PP_1318 -1.3 -3.7 Cytochrome b compare
PP_4359 -1.3 -3.9 Flagellar protein FliL compare
PP_4385 -1.3 -3.7 flagellar basal-body rod protein FlgG compare
PP_5621 -1.3 -1.5 protein of unknown function compare
PP_2336 -1.3 -1.9 aconitate hydratase 1 compare
PP_4940 -1.3 -5.1 Putative glycosyltransferase compare
PP_1801 -1.3 -6.7 Glycosyl transferase WbpY compare
PP_5084 -1.3 -4.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4386 -1.3 -3.2 flagellar basal-body rod protein FlgF compare
PP_3821 -1.3 -4.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4343 -1.3 -3.6 Flagellar biosynthesis protein FlhF compare
PP_0191 -1.3 -2.8 Transcriptional regulatory protein AlgQ compare
PP_0082 -1.3 -3.3 tryptophan synthase alpha chain compare
PP_4365 -1.3 -2.9 Flagellar protein FliJ compare
PP_2328 -1.2 -2.6 Phosphoadenosine phosphosulfate reductase compare
PP_5453 -1.2 -1.8 conserved protein of unknown function compare
PP_4204 -1.2 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5337 -1.2 -2.7 LysR family transcriptional regulator compare
PP_1780 -1.2 -8.8 putative mannosyltransferase compare
PP_5303 -1.2 -2.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5310 -1.2 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_0401 -1.2 -2.5 Ribosomal RNA small subunit methyltransferase A compare
PP_5393 -1.2 -1.5 putative metal-binding chaperone compare
PP_1987 -1.2 -1.9 Methlytransferase, UbiE/COQ5 family compare
PP_4917 -1.2 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5110 -1.2 -1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0789 -1.2 -3.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2459 -1.2 -2.2 ribose pyranase compare
PP_4261 -1.2 -2.8 cation-transporting P-type ATPase compare
PP_4060 -1.2 -6.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3926 -1.1 -1.4 short-chain dehydrogenase compare
PP_4785 -1.1 -3.6 conserved exported protein of unknown function compare
PP_0276 -1.1 -1.1 Transcriptional regulator, Cro/CI family compare
PP_3258 -1.1 -2.5 conserved protein of unknown function compare
PP_3312 -1.1 -1.4 putative Heat shock protein compare
PP_4355 -1.1 -1.6 flagellar export apparatus subunit compare
PP_4892 -1.1 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3094 -1.1 -2.1 conserved exported protein of unknown function compare
PP_1802 -1.1 -7.1 glycosyl transferase compare
PP_1702 -1.1 -2.6 Recombination-associated protein RdgC compare
PP_2031 -1.1 -2.3 conserved protein of unknown function compare
PP_4067 -1.1 -3.3 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_3102 -1.1 -2.6 conserved protein of unknown function compare
PP_5514 -1.1 -1.7 conserved protein of unknown function compare
PP_4340 -1.0 -1.7 response regulator for chemotactic signal transduction compare
PP_4517 -1.0 -1.4 conserved protein of unknown function compare
PP_0484 -1.0 -2.9 transporter of an unknown substrate compare
PP_4121 -1.0 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4267 -1.0 -2.1 Recombination protein RecR compare
PP_0035 -1.0 -1.6 putative bactoprenol-linked glycose transferase compare
PP_4875 -1.0 -2.6 conserved membrane protein of unknown function compare
PP_4361 -1.0 -3.5 Flagellar hook-length control protein FliK compare
PP_5582 -1.0 -1.1 conserved protein of unknown function compare
PP_0214 -1.0 -3.2 4-aminobutyrate aminotransferase compare
PP_2186 -1.0 -1.5 putative Formate dehydrogenase, delta subunit compare
PP_4328 -1.0 -2.5 conserved protein of unknown function compare
PP_4909 -1.0 -3.2 phosphoserine phosphatase compare
PP_0002 -1.0 -4.0 probable chromosome partition protein compare
PP_2668 -1.0 -0.8 ABC efflux transporter, ATP-binding protein compare
PP_4392 -1.0 -3.7 chemotaxis protein methyltransferase compare
PP_1764 -1.0 -2.1 Phosphoglycolate phosphatase 2 compare
PP_4384 -1.0 -4.6 Flagellar L-ring protein compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs across organisms