Experiment set25IT034 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1655 +2.4 7.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 +2.3 8.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4561 +1.5 2.5 stress response protein compare
PP_0855 +1.5 2.9 conserved protein of unknown function compare
PP_0593 +1.2 1.8 putative ribosome-binding factor compare
PP_1269 +1.2 2.0 Universal stress protein family compare
PP_2737 +1.1 1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0001 +1.1 2.0 probable chromosome-partitioning protein compare
PP_1381 +1.1 1.9 4-carboxymuconolactone decarboxylase compare
PP_1562 +1.1 2.5 putative Phage terminase, small subunit compare
PP_1310 +1.1 2.3 conserved hypothetical protein compare
PP_2341 +1.0 3.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2087 +1.0 1.6 CmpX protein compare
PP_2826 +0.9 1.8 Transcriptional regulator MexT compare
PP_5487 +0.9 3.2 conserved protein of unknown function compare
PP_1713 +0.9 1.4 Transcriptional regulator PcaQ compare
PP_4196 +0.9 2.6 conserved exported protein of unknown function compare
PP_2322 +0.9 4.4 Major outer membrane lipoprotein compare
PP_2462 +0.9 1.7 conserved protein of unknown function compare
PP_0048 +0.9 1.7 conserved protein of unknown function compare
PP_4681 +0.9 3.7 conserved protein of unknown function compare
PP_0685 +0.9 1.5 conserved protein of unknown function compare
PP_1026 +0.9 2.5 Peptidase, M23/M37 family compare
PP_1938 +0.9 2.5 conserved protein of unknown function compare
PP_5491 +0.9 3.0 conserved protein of unknown function with SEC-C motif domain compare
PP_0319 +0.8 0.9 conserved protein of unknown function compare
PP_4226 +0.8 4.4 conserved protein of unknown function compare
PP_1967 +0.8 3.6 tRNA D-aminoacylase compare
PP_2231 +0.8 2.4 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1131 +0.8 1.8 outer membrane lipoprotein compare
PP_4504 +0.8 1.6 conserved exported protein of unknown function compare
PP_4835 +0.8 1.8 conserved exported protein of unknown function compare
PP_2880 +0.8 2.8 Transcriptional regulator, TetR family compare
PP_2581 +0.8 1.2 conserved protein of unknown function compare
PP_5528 +0.8 1.5 conserved protein of unknown function compare
PP_4778 +0.8 1.9 23S rRNA pseudouridine 2457 synthase compare
PP_4847 +0.8 2.9 chaperone modulatory of CbpA co-chaperone protein compare
PP_0839 +0.8 2.2 tRNA Cm32/Um32 methyltransferase compare
PP_3374 +0.8 2.3 conserved protein of unknown function compare
PP_4268 +0.8 1.2 nucleoid-associated broad specificity regulator compare
PP_5313 +0.7 1.7 DNA-binding protein HU-alpha compare
PP_1097 +0.7 0.8 Methionine--tRNA ligase compare
PP_4133 +0.7 1.8 Transcriptional regulator-related protein compare
PP_5027 +0.7 2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_3478 +0.7 3.4 putative Secretion protein compare
PP_3919 +0.7 1.2 conserved protein of unknown function compare
PP_5619 +0.7 1.4 protein of unknown function compare
PP_2950 +0.7 2.8 conserved protein of unknown function compare
PP_0905 +0.7 1.1 conserved exported protein of unknown function compare
PP_5674 +0.7 1.0 conserved protein of unknown function compare
PP_0841 +0.7 2.3 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_5707 +0.7 2.8 conserved protein of unknown function compare
PP_0672 +0.7 4.9 Sensory box protein compare
PP_2281 +0.7 2.0 putative Capsid assembly protein compare
PP_t11 +0.7 1.6 tRNA-Lys compare
PP_4317 +0.7 1.4 conserved protein of unknown function compare
PP_1774 +0.7 1.0 conserved exported protein of unknown function compare
PP_2640 +0.7 2.8 Acetyltransferase, GNAT family compare
PP_2070 +0.7 0.7 Transcriptional regulator, AraC family compare
PP_4957 +0.7 2.5 conserved protein of unknown function compare
PP_3280 +0.7 2.5 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_4952 +0.7 1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5557 +0.6 2.0 protein of unknown function compare
PP_1164 +0.6 2.0 Transcriptional regulator, LysR family compare
PP_2835 +0.6 1.8 putative oxidoreductase compare
PP_3407 +0.6 1.3 conserved protein of unknown function compare
PP_0775 +0.6 1.3 conserved protein of unknown function compare
PP_0377 +0.6 0.5 coenzyme PQQ synthesis protein D compare
PP_1552 +0.6 1.9 putative Phage replication protein compare
PP_2681 +0.6 1.2 coenzyme PQQ synthesis protein D compare
PP_3617 +0.6 1.8 conserved membrane protein of unknown function compare
PP_1834 +0.6 2.3 conserved protein of unknown function compare
PP_2269 +0.6 2.2 putative N-acetylmuramoyl-L-alanine amidase compare
PP_0649 +0.6 2.4 MutT/nudix family protein compare
PP_2883 +0.6 1.5 conserved protein of unknown function compare
PP_0893 +0.6 1.3 ThiJ/PfpI family protein compare
PP_3417 +0.6 2.3 D-gluconate transporter compare
PP_1055 +0.6 0.5 Type II secretion pathway protein GspN compare
PP_5191 +0.6 1.2 conserved exported protein of unknown function compare
PP_0781 +0.6 2.0 conserved protein of unknown function compare
PP_4874 +0.6 0.8 50S ribosomal protein L9 compare
PP_3662 +0.6 3.3 conserved protein of unknown function compare
PP_1176 +0.6 0.8 conserved protein of unknown function compare
PP_5225 +0.6 1.0 frataxin compare
PP_4139 +0.6 1.4 conserved protein of unknown function compare
PP_0656 +0.6 2.5 putative Amino acid ABC transporter, permease protein compare
PP_0762 +0.6 2.1 Glycerate dehydrogenase compare
PP_4808 +0.6 1.8 23S rRNA m3psi1915 methyltransferase compare
PP_5725 +0.5 1.5 protein of unknown function compare
PP_5519 +0.5 1.5 conserved protein of unknown function of phage origin compare
PP_1678 +0.5 1.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5073 +0.5 1.0 conserved exported protein of unknown function compare
PP_1795 +0.5 3.4 conserved protein of unknown function compare
PP_3447 +0.5 1.0 conserved membrane protein of unknown function compare
PP_2254 +0.5 2.0 Transcriptional regulator, GntR family compare
PP_1683 +0.5 1.8 Transcriptional regulator, MarR family compare
PP_0632 +0.5 2.0 leader peptidase/N-methyltransferase compare
PP_0210 +0.5 1.7 putative Phycobiliprotein compare
PP_5162 +0.5 1.7 conserved exported protein of unknown function compare
PP_3228 +0.5 1.7 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_2547 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_5017 +0.5 0.8 Sec-independent protein translocase protein TatB compare
PP_0307 +0.5 1.7 conserved exported protein of unknown function compare
PP_1649 +0.5 1.9 D-lactate dehydrogenase compare
PP_0807 +0.5 2.1 DNA-binding transcriptional dual regulator (NO) compare
PP_1190 +0.5 1.7 conserved protein of unknown function compare
PP_4180 +0.5 2.2 conserved protein of unknown function compare
PP_3320 +0.5 1.3 conserved protein of unknown function compare
PP_3792 +0.5 1.5 conserved protein of unknown function compare
PP_1294 +0.5 1.8 molybdopterin synthase large subunit compare
PP_3475 +0.5 1.5 putative type II secretory pathway, pseudopilin pulG-related signal peptide protein compare
PP_3318 +0.5 1.4 conserved protein of unknown function compare
PP_3876 +0.5 1.2 conserved protein of unknown function compare
PP_0608 +0.5 2.7 putative type 4 fimbrial biogenesis protein compare
PP_2866 +0.5 1.4 FMN-dependent NADH-azoreductase 1 compare
PP_5645 +0.5 2.1 conserved protein of unknown function compare
PP_3179 +0.5 1.5 Transcriptional regulator, LysR family compare
PP_3693 +0.5 1.4 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0087 +0.5 0.9 conserved exported protein of unknown function compare
PP_1454 +0.5 1.4 conserved protein of unknown function compare
PP_1835 +0.5 2.5 conserved protein of unknown function compare
PP_2044 +0.5 1.1 conserved inner membrane protein of unknown function compare
PP_3477 +0.5 1.8 Putative secretion type II protein related to protein G compare
PP_3643 +0.5 1.1 putative Oxidoreductase compare
PP_3424 +0.5 1.4 Type II secretion pathway protein XcpS compare
PP_0794 +0.5 1.0 1-phosphofructokinase monomer compare
PP_4424 +0.5 0.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1122 +0.5 0.7 OmpA family protein compare
PP_5711 +0.5 1.8 protein of unknown function compare
PP_5188 +0.5 1.9 putative transcriptional regulator (AsnC/Lrp family) compare
PP_5156 +0.5 2.5 conserved exported protein of unknown function compare
PP_3941 +0.5 1.8 maleamate amidohydrolase compare
PP_5500 +0.5 1.8 protein of unknown function compare
PP_1487 +0.5 1.7 conserved protein of unknown function compare
PP_2661 +0.5 1.6 conserved protein of unknown function compare
PP_1239 +0.5 1.6 Metallo-beta-lactamase family protein compare
PP_4584 +0.5 1.3 putative endonuclease compare
PP_4569 +0.5 0.8 conserved protein of unknown function compare
PP_0398 +0.5 1.6 Thiosulfate sulfurtransferase GlpE compare
PP_1363 +0.5 2.2 conserved protein of unknown function compare
PP_1178 +0.5 1.0 conserved protein of unknown function compare
PP_4797 +0.5 0.7 conserved protein of unknown function compare
PP_1387 +0.5 1.9 Probable HTH-type transcriptional regulator TtgR compare
PP_3419 +0.5 2.0 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_2313 +0.5 1.3 conserved membrane protein of unknown function compare
PP_2127 +0.5 1.9 Sensor histidine kinase compare
PP_1756 +0.5 1.8 conserved exported protein of unknown function compare
PP_5552 +0.5 1.3 conserved protein of unknown function compare
PP_1583 +0.5 1.4 putative Structural protein P5 compare
PP_3913 +0.5 2.2 protein of unknown function compare
PP_5628 +0.5 1.5 conserved protein of unknown function compare
PP_0303 +0.5 1.9 dehydrocarnitine cleavage enzyme compare
PP_1415 +0.5 1.3 putative membrane associated enzyme subunit compare
PP_4503 +0.5 1.3 DNA-binding response regulator compare
PP_1419 +0.5 2.3 tricarboxylate-specific outer membrane porin compare
PP_0922 +0.4 1.5 conserved protein of unknown function compare
PP_1404 +0.4 0.7 conserved protein of unknown function compare
PP_4832 +0.4 1.3 Precorrin-6x reductase compare
PP_4246 +0.4 2.8 Periplasmic binding protein compare
PP_0633 +0.4 1.4 Type 4 fimbrial assembly protein PilC compare
PP_3639 +0.4 2.0 Alkylhydroperoxidase AhpD domain protein compare
PP_1508 +0.4 1.0 conserved protein of unknown function compare
PP_5638 +0.4 2.3 conserved protein of unknown function compare
PP_2060 +0.4 0.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5724 +0.4 2.5 conserved protein of unknown function compare
PP_2159 +0.4 1.3 Copper-binding protein, plastocyanin/azurin family compare
PP_3824 +0.4 0.8 conserved exported protein of unknown function compare
PP_4217 +0.4 3.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0326 +0.4 1.4 sarcosine oxidase subunit gamma compare
PP_0209 +0.4 1.8 ATP-binding taurine transporter subunit compare
PP_1793 +0.4 3.8 Glycosyl transferase, group 2 family protein compare
PP_5687 +0.4 1.6 putative permease of the major facilitator superfamily compare
PP_5572 +0.4 1.3 protein of unknown function compare
PP_4266 +0.4 1.3 Adenine phosphoribosyltransferase compare
PP_2720 +0.4 0.8 conserved protein of unknown function compare
PP_0958 +0.4 1.7 phospholipid ABC transporter ATP-binding subunit compare
PP_0128 +0.4 2.4 conserved protein of unknown function compare
PP_0189 +0.4 2.0 putative heme biosynthesis protein compare
PP_2152 +0.4 0.7 glycerophosphoryl diester phosphodiesterase compare
PP_1935 +0.4 1.5 Transcriptional regulator, Cro/CI family compare
PP_0165 +0.4 3.5 GGDEF domain protein compare
PP_2958 +0.4 1.7 Glutaredoxin compare
PP_0168 +0.4 3.9 putative surface adhesion protein compare
PP_1633 +0.4 1.3 conserved exported protein of unknown function compare
PP_3061 +0.4 1.3 conserved protein of unknown function compare
PP_4742 +0.4 2.5 Type I restriction-modification system, S subunit compare
PP_4447 +0.4 1.7 conserved protein of unknown function compare
PP_3399 +0.4 3.0 minor curlin subunit CsgB, nucleation component of curlin monomers compare
PP_1054 +0.4 0.8 Type II secretion pathway protein XcpZ compare
PP_1869 +0.4 2.5 4,5-DOPA-dioxygenase compare
PP_4271 +0.4 0.5 conserved protein of unknown function compare
PP_2071 +0.4 1.4 conserved protein of unknown function compare
PP_2633 +0.4 0.7 conserved protein of unknown function compare
PP_1456 +0.4 1.8 conserved membrane protein of unknown function compare
PP_0827 +0.4 0.9 putative phosphonate transport system permease protein PtxC compare
PP_2385 +0.4 2.1 Branched-chain amino acid transport protein AzlC compare
PP_3411 +0.4 0.6 conserved protein of unknown function compare
PP_0534 +0.4 2.2 putative Transcriptional regulator PfeR compare
PP_4575 +0.4 1.0 Urea amidolyase-related protein compare
PP_5137 +0.4 2.0 ferric iron ABC transporter, ATP-binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs across organisms