Experiment set25IT032 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

200 most important genes:

  gene name fitness t score description  
PP_4354 -6.9 -3.3 flagellar export apparatus subunit compare
PP_0760 -6.8 -3.7 conserved membrane protein of unknown function compare
PP_2433 -6.8 -2.8 conserved protein of unknown function compare
PP_1623 -6.5 -9.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_4365 -6.5 -5.4 Flagellar protein FliJ compare
PP_1778 -6.1 -4.2 Lipopolysaccharide ABC export system, permease protein compare
PP_5502 -5.8 -4.7 ribosome modulation factor compare
PP_1779 -5.5 -6.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4994 -5.4 -3.7 conserved protein of unknown function compare
PP_1198 -5.3 -3.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0164 -5.3 -3.6 conserved protein of unknown function compare
PP_3052 -5.3 -1.3 conserved protein of unknown function compare
PP_0276 -5.2 -1.3 Transcriptional regulator, Cro/CI family compare
PP_1410 -5.2 -1.3 conserved protein of unknown function compare
PP_4936 -5.2 -9.2 O-antigen polymerase compare
PP_5267 -5.1 -2.5 putative cytochrome c5 compare
PP_1216 -5.1 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4058 -5.0 -3.5 1,4-alpha-glucan branching enzyme compare
PP_1898 -5.0 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0396 -4.9 -14.9 conserved protein of unknown function compare
PP_1215 -4.8 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_3484 -4.8 -5.9 Response regulator receiver protein compare
PP_0397 -4.7 -17.6 protein kinase compare
PP_0951 -4.7 -7.6 Ribosome hibernation promoting factor compare
PP_0957 -4.7 -1.6 D-arabinose 5-phosphate isomerase compare
PP_5015 -4.7 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4355 -4.7 -1.6 flagellar export apparatus subunit compare
PP_4376 -4.6 -13.0 flagellar filament capping protein compare
PP_0274 -4.6 -1.6 putative transcriptional regulator containing HTH domain compare
PP_5185 -4.6 -3.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_t10 -4.6 -1.6 tRNA-Pro compare
PP_4370 -4.6 -3.7 Flagellar hook-basal body complex protein FliE compare
PP_4561 -4.6 -1.1 stress response protein compare
PP_4143 -4.5 -4.5 conserved protein of unknown function compare
PP_4337 -4.5 -6.2 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0735 -4.4 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_4356 -4.4 -2.3 Flagellar protein FliO compare
PP_2152 -4.3 -2.6 glycerophosphoryl diester phosphodiesterase compare
PP_4332 -4.3 -3.4 Chemotaxis protein CheW compare
PP_5289 -4.3 -3.0 Acetylglutamate kinase compare
PP_0395 -4.3 -12.9 putative type IV piliation protein compare
PP_1088 -4.3 -6.5 Argininosuccinate synthase compare
PP_4396 -4.2 -3.5 conserved protein of unknown function compare
PP_1099 -4.2 -2.3 Cold shock protein CapB compare
PP_0547 -4.2 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0627 -4.2 -2.4 conserved protein of unknown function compare
PP_4381 -4.2 -11.4 Flagellar hook-associated protein FlgK compare
PP_4385 -4.2 -4.3 flagellar basal-body rod protein FlgG compare
PP_2307 -4.1 -2.2 conserved protein of unknown function compare
PP_4902 -4.1 -2.8 Oligoribonuclease compare
PP_4366 -4.1 -8.5 flagellum-specific ATP synthase compare
PP_4380 -4.1 -13.7 Flagellar hook-associated protein FlgL compare
PP_4943 -4.0 -2.1 putative Glycosyl transferase compare
PP_4378 -4.0 -13.7 flagellin, filament structural protein compare
PP_1328 -4.0 -2.2 Protein MraZ compare
PP_4394 -4.0 -5.0 flagella basal body P-ring formation protein compare
PP_4344 -4.0 -11.0 flagellar export pore protein compare
PP_3821 -3.9 -9.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4890 -3.9 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4938 -3.9 -8.7 putative Glycosyl transferase compare
PP_0513 -3.9 -2.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4383 -3.8 -2.7 Flagellar P-ring protein compare
PP_4368 -3.7 -4.0 flagellar motor switch protein compare
PP_2403 -3.7 -1.3 Chemotaxis protein CheY compare
PP_0965 -3.7 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4875 -3.7 -4.4 conserved membrane protein of unknown function compare
PP_4358 -3.7 -5.7 flagellar synthesis, switching and energizing component compare
PP_4940 -3.7 -7.5 Putative glycosyltransferase compare
PP_2497 -3.6 -1.7 conserved protein of unknown function compare
PP_3946 -3.6 -1.2 HTH-type transcriptional repressor NicR compare
PP_3580 -3.6 -2.1 conserved protein of unknown function compare
PP_1326 -3.6 -2.5 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4726 -3.6 -2.5 Chaperone protein DnaJ compare
PP_0959 -3.5 -2.4 phospholipid ABC transporter compare
PP_4390 -3.5 -4.5 flagellar basal-body rod protein FlgC compare
PP_4342 -3.5 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_0966 -3.5 -7.4 Histidinol dehydrogenase compare
PP_0435 -3.5 -8.4 Peptidase, M23/M37 family compare
PP_1020 -3.5 -1.8 putative glucose-6-phosphate 1-epimerase compare
PP_0184 -3.5 -3.4 Argininosuccinate lyase compare
PP_4517 -3.5 -2.1 conserved protein of unknown function compare
PP_1999 -3.5 -1.8 membrane protein required for colicin V production compare
PP_5248 -3.4 -1.1 putative hydrolase compare
PP_4532 -3.4 -2.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4341 -3.4 -4.8 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_2862 -3.4 -5.6 Undecaprenyl-diphosphatase compare
PP_5146 -3.4 -8.2 RNA pyrophosphohydrolase compare
PP_0289 -3.3 -6.8 Imidazoleglycerol-phosphate dehydratase compare
PP_1319 -3.3 -6.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4941 -3.3 -6.0 conserved exported protein of unknown function compare
PP_0065 -3.3 -2.3 NAD-binding component of TrK potassium transporter compare
PP_4739 -3.3 -1.9 conserved protein of unknown function compare
PP_1734 -3.3 -2.3 Probable septum site-determining protein MinC compare
PP_4680 -3.2 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -3.2 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_3511 -3.2 -5.2 Branched-chain-amino-acid aminotransferase compare
PP_4361 -3.2 -3.3 Flagellar hook-length control protein FliK compare
PP_1906 -3.2 -3.3 ribosomal large subunit pseudouridine synthase C compare
PP_4384 -3.1 -6.0 Flagellar L-ring protein compare
PP_4369 -3.1 -5.8 Flagellar M-ring protein compare
PP_4382 -3.1 -5.5 Peptidoglycan hydrolase FlgJ compare
PP_4937 -3.1 -4.1 toluene tolerance protein compare
PP_0292 -3.1 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0753 -3.1 -5.4 putative Lipoprotein compare
PP_4004 -3.1 -4.7 DNA translocase FtsK compare
PP_1562 -3.0 -1.4 putative Phage terminase, small subunit compare
PP_4891 -3.0 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0967 -3.0 -6.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3649 -3.0 -4.8 Transcriptional regulator, GntR family compare
PP_5230 -3.0 -4.2 Tyrosine recombinase XerC compare
PP_3460 -3.0 -1.5 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4679 -3.0 -3.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5217 -3.0 -9.1 Polyphosphate kinase compare
PP_3407 -3.0 -2.2 conserved protein of unknown function compare
PP_5644 -3.0 -2.5 conserved membrane protein of unknown function compare
PP_4942 -3.0 -2.7 conserved protein of unknown function compare
PP_5714 -3.0 -3.1 conserved protein of unknown function compare
PP_1217 -3.0 -5.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0401 -2.9 -2.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4388 -2.9 -8.4 Flagellar hook protein FlgE compare
PP_3315 -2.9 -2.2 conserved membrane protein of unknown function compare
PP_4880 -2.9 -6.1 exoribonuclease R compare
PP_2103 -2.8 -2.2 conserved protein of unknown function compare
PP_3037 -2.8 -1.3 C4-type zinc finger protein, DksA/TraR family compare
PP_4952 -2.8 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1178 -2.8 -2.2 conserved protein of unknown function compare
PP_3924 -2.8 -2.8 conserved protein of unknown function compare
PP_4262 -2.8 -2.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2088 -2.8 -2.1 RNA polymerase sigma factor SigX compare
PP_0440 -2.8 -2.6 Elongation factor Tu-A compare
PP_2475 -2.8 -4.9 Transcriptional regulator, TetR family compare
PP_4375 -2.7 -7.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_3833 -2.7 -3.4 Response regulator compare
PP_4008 -2.7 -6.0 ATP-dependent serine protease compare
PP_0290 -2.7 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3519 -2.7 -0.9 putative Lipoprotein compare
PP_1938 -2.7 -1.6 conserved protein of unknown function compare
PP_1224 -2.6 -4.2 periplasmic subunit of the TolQRA transport system compare
PP_4067 -2.6 -4.1 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4333 -2.6 -4.0 CheW domain protein compare
PP_1804 -2.6 -7.3 Glycosyl transferase WbpL compare
PP_4386 -2.6 -2.7 flagellar basal-body rod protein FlgF compare
PP_4247 -2.6 -1.3 Exonuclease compare
PP_1428 -2.6 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_1855 -2.6 -2.7 conserved exported protein of unknown function compare
PP_2337 -2.6 -1.7 aconitate isomerase compare
PP_3824 -2.6 -1.9 conserved exported protein of unknown function compare
PP_1812 -2.6 -2.1 conserved protein of unknown function compare
PP_1237 -2.5 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0663 -2.5 -3.5 Transcriptional regulator, AsnC family compare
PP_5346 -2.5 -6.1 pyruvate carboxylase subunit B compare
PP_2214 -2.5 -3.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1317 -2.5 -3.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0125 -2.5 -2.0 putative cytochrome c-type protein compare
PP_4678 -2.5 -8.4 Ketol-acid reductoisomerase compare
PP_4981 -2.5 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_4352 -2.5 -5.1 flagellin export apparatus, substrate specificity protein compare
PP_3837 -2.4 -2.7 inner membrane protein of unknown function compare
PP_4389 -2.4 -4.6 Flagellar basal-body rod modification protein FlgD compare
PP_1733 -2.4 -2.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_0846 -2.4 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_1293 -2.4 -1.3 molybdopterin synthase small subunit compare
PP_4593 -2.4 -1.4 conserved protein of unknown function compare
PP_4917 -2.4 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4338 -2.4 -4.7 Chemotaxis histidine kinase CheA compare
PP_1079 -2.3 -4.0 Ornithine carbamoyltransferase compare
PP_1318 -2.3 -5.6 Cytochrome b compare
PP_2029 -2.3 -1.9 von Willebrand factor type A domain protein compare
PP_4215 -2.3 -4.2 pyoverdine biosynthesis related protein compare
PP_2131 -2.3 -3.3 DNA-binding ATPase involved in replication compare
PP_5SB -2.3 -1.5 5S ribosomal RNA compare
PP_0516 -2.3 -2.9 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_1468 -2.3 -1.7 Tyrosine recombinase XerD compare
PP_1988 -2.3 -5.6 3-isopropylmalate dehydrogenase compare
PP_4353 -2.3 -2.6 Flagellar biosynthetic protein fliR compare
PP_1860 -2.2 -3.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_4359 -2.2 -4.2 Flagellar protein FliL compare
PP_4331 -2.2 -3.9 conserved protein of unknown function compare
PP_0122 -2.2 -2.0 conserved exported protein of unknown function compare
PP_1439 -2.2 -1.1 conserved exported protein of unknown function compare
PP_4520 -2.2 -2.7 conserved protein of unknown function compare
PP_4471 -2.2 -4.5 Magnesium transporter compare
PP_4343 -2.2 -4.7 Flagellar biosynthesis protein FlhF compare
PP_0185 -2.2 -4.8 Positive alginate biosynthesis regulatory protein compare
PP_4722 -2.2 -3.4 Transcription elongation factor GreA compare
PP_5309 -2.2 -4.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1096 -2.2 -1.8 putative electron transport complex protein compare
PP_2972 -2.2 -1.3 conserved protein of unknown function compare
PP_4122 -2.2 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0082 -2.2 -3.7 tryptophan synthase alpha chain compare
PP_5505 -2.1 -1.9 conserved transmembrane protein of unknown function compare
PP_1986 -2.1 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_5324 -2.1 -1.7 Response regulator compare
PP_5253 -2.1 -1.6 Arylesterase compare
PP_0218 -2.1 -5.4 Sensory box protein compare
PP_5328 -2.1 -1.5 putative phosphate transport system permease protein compare
PP_0368 -2.1 -8.6 putative Acyl-CoA dehydrogenase compare
PP_2929 -2.1 -6.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4066 -2.1 -2.1 methylglutaconyl-CoA hydratase compare
PP_5310 -2.1 -4.5 junction-specific ATP-dependent DNA helicase compare


Specific Phenotypes

For 2 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs across organisms