Experiment set25IT023 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.6 10.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.4 7.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +2.7 23.9 Sensor protein GacS compare
PP_4099 +2.6 19.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1237 +2.0 2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5546 +1.7 2.4 conserved protein of unknown function compare
PP_1045 +1.6 1.6 Type II secretion pathway protein XcpP compare
PP_1381 +1.5 2.6 4-carboxymuconolactone decarboxylase compare
PP_1428 +1.5 2.4 Sigma factor AlgU negative regulatory protein compare
PP_3378 +1.3 2.5 putative 2-ketogluconokinase compare
PP_4073 +1.2 4.0 conserved exported protein of unknown function compare
PP_3892 +1.2 1.9 conserved protein of unknown function compare
PP_2720 +1.2 2.2 conserved protein of unknown function compare
PP_5191 +1.1 1.3 conserved exported protein of unknown function compare
PP_1568 +1.1 1.5 conserved protein of unknown function compare
PP_4373 +1.1 7.4 Transcriptional regulator FleQ compare
PP_4271 +1.1 1.3 conserved protein of unknown function compare
PP_3398 +1.0 2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3726 +1.0 1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_2677 +1.0 1.6 conserved exported protein of unknown function compare
PP_1062 +1.0 1.3 MutT/nudix family protein compare
PP_0166 +1.0 7.3 HlyD family secretion protein compare
PP_5201 +0.9 1.7 conserved protein of unknown function, UPF0149 family compare
PP_4254 +0.9 2.1 conserved protein of unknown function compare
PP_0167 +0.9 7.8 Toxin secretion ATP-binding protein compare
PP_3904 +0.9 1.9 conserved protein of unknown function compare
PP_0319 +0.9 1.9 conserved protein of unknown function compare
PP_2497 +0.9 2.6 conserved protein of unknown function compare
PP_2186 +0.9 2.5 putative Formate dehydrogenase, delta subunit compare
PP_0022 +0.9 1.2 hypothetical protein compare
PP_1020 +0.9 1.3 putative glucose-6-phosphate 1-epimerase compare
PP_1190 +0.9 2.4 conserved protein of unknown function compare
PP_0998 +0.9 3.1 conserved protein of unknown function compare
PP_0627 +0.9 2.4 conserved protein of unknown function compare
PP_5039 +0.9 1.2 conserved protein of unknown function compare
PP_4171 +0.9 6.5 conserved exported protein of unknown function compare
PP_5583 +0.9 1.4 conserved protein of unknown function compare
PP_3748 +0.8 3.9 conserved hypothetical protein compare
PP_4217 +0.8 7.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0241 +0.8 1.3 Transporter compare
PP_5508 +0.8 1.3 conserved protein of unknown function compare
PP_0945 +0.8 1.7 conserved protein of unknown function compare
PP_1605 +0.8 3.0 Ribonuclease HII compare
PP_5571 +0.8 1.2 conserved protein of unknown function compare
PP_0048 +0.8 1.3 conserved protein of unknown function compare
PP_0509 +0.8 2.9 conserved protein of unknown function compare
PP_1824 +0.8 1.3 Smr domain protein compare
PP_3876 +0.8 2.0 conserved protein of unknown function compare
PP_0165 +0.8 5.6 GGDEF domain protein compare
PP_5243 +0.8 1.5 putative hydrolase compare
PP_1678 +0.8 2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0794 +0.8 1.7 1-phosphofructokinase monomer compare
PP_0916 +0.8 1.3 Amino acid transporter LysE compare
PP_1987 +0.8 1.9 Methlytransferase, UbiE/COQ5 family compare
PP_4999 +0.8 0.3 dihydroorotase-like protein compare
PP_3227 +0.8 3.1 Transcriptional regulator, LysR family compare
PP_3407 +0.8 1.4 conserved protein of unknown function compare
PP_2231 +0.7 2.5 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1207 +0.7 2.1 conserved protein of unknown function compare
PP_3840 +0.7 1.2 conserved protein of unknown function compare
PP_1293 +0.7 1.5 molybdopterin synthase small subunit compare
PP_4845 +0.7 3.0 putative Urea ABC transporter, ATP-binding protein compare
PP_2347 +0.7 2.5 DNA-binding response regulator compare
PP_4799 +0.7 0.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3142 +0.7 3.2 putative Sugar transferase compare
PP_0168 +0.7 6.1 putative surface adhesion protein compare
PP_5467 +0.7 2.5 conserved exported protein of unknown function compare
PP_4631 +0.7 2.1 conserved protein of unknown function compare
PP_5106 +0.7 2.9 conserved inner membrane protein compare
PP_4180 +0.7 1.3 conserved protein of unknown function compare
PP_4913 +0.7 1.8 conserved protein of unknown function compare
PP_5487 +0.7 1.1 conserved protein of unknown function compare
PP_4178 +0.7 2.2 Dienelactone hydrolase family protein compare
PP_5715 +0.7 3.0 protein of unknown function compare
PP_2581 +0.7 0.5 conserved protein of unknown function compare
PP_4957 +0.7 1.4 conserved protein of unknown function compare
PP_5727 +0.7 2.4 protein of unknown function compare
PP_1176 +0.7 1.0 conserved protein of unknown function compare
PP_3916 +0.7 0.8 conserved protein of unknown function compare
PP_0947 +0.7 2.4 conserved membrane protein of unknown function compare
PP_3054 +0.7 2.3 Pyocin R2_PP, baseplate/tail fiber protein compare
PP_2243 +0.7 2.2 conserved protein of unknown function compare
PP_4238 +0.7 2.1 conserved protein of unknown function compare
PP_1790 +0.7 1.3 putative Acylneuraminate cytidylyltransferase compare
PP_4519 +0.7 4.8 Agglutination protein compare
PP_2204 +0.7 2.4 copper resistance protein B compare
PP_5640 +0.7 1.2 conserved protein of unknown function compare
PP_3971 +0.6 1.1 conserved protein of unknown function compare
PP_5586 +0.6 1.6 exported protein of unknown function compare
PP_3419 +0.6 2.1 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_4266 +0.6 2.2 Adenine phosphoribosyltransferase compare
PP_4156 +0.6 1.1 Transcriptional regulator, LysR family compare
PP_5139 +0.6 2.0 cadmium translocating P-type ATPase compare
PP_1110 +0.6 1.5 serine acetyltransferase compare
PP_3808 +0.6 0.9 Antibiotic synthesis protein MbtH compare
PP_1742 +0.6 2.0 conserved inner membrane protein of unknown function compare
PP_5603 +0.6 2.6 putative FAD dependent oxidoreductase compare
PP_0122 +0.6 1.2 conserved exported protein of unknown function compare
PP_0377 +0.6 1.4 coenzyme PQQ synthesis protein D compare
PP_0653 +0.6 0.9 conserved protein of unknown function compare
PP_2110 +0.6 1.5 putative ribosomal large subunit pseudouridine synthase compare
PP_0182 +0.6 2.0 conserved protein of unknown function compare
PP_3580 +0.6 1.1 conserved protein of unknown function compare
PP_2229 +0.6 1.5 putative K(+)/H(+) antiporter subunit C compare
PP_3181 +0.6 2.6 Site-specific recombinase, phage integrase family compare
PP_2970 +0.6 1.6 conserved exported protein of unknown function compare
PP_0250 +0.6 1.5 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5704 +0.6 1.8 conserved protein of unknown function compare
PP_0101 +0.6 2.5 putative sulfate transporter compare
PP_1214 +0.6 0.9 putative transcriptional regulatory protein compare
PP_3963 +0.6 1.7 conserved protein of unknown function compare
PP_3337 +0.6 1.9 conserved membrane protein of unknown function compare
PP_5240 +0.6 0.9 Response regulator compare
PP_0181 +0.6 2.0 conserved protein of unknown function compare
PP_2996 +0.6 3.8 conserved protein of unknown function compare
PP_2513 +0.6 0.8 4-oxalomesaconate tautomerase compare
PP_1466 +0.6 1.4 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_5022 +0.6 0.8 Glutamine transport ATP-binding protein GlnQ compare
PP_3098 +0.6 0.8 conserved protein of unknown function compare
PP_4109 +0.6 0.8 conserved protein of unknown function compare
PP_5647 +0.6 2.5 conserved protein of unknown function compare
PP_1439 +0.6 0.9 conserved exported protein of unknown function compare
PP_4273 +0.6 1.0 Transcriptional regulator, MerR family compare
PP_2836 +0.6 2.2 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_0276 +0.6 0.8 Transcriptional regulator, Cro/CI family compare
PP_1112 +0.6 2.8 conserved membrane protein of unknown function compare
PP_2387 +0.6 1.6 conserved protein of unknown function compare
PP_5429 +0.6 2.2 protein of unknown function compare
PP_3131 +0.6 3.3 conserved membrane protein of unknown function compare
PP_3127 +0.6 2.1 putative Exopolysaccharide transport protein compare
PP_5529 +0.6 1.6 putative epimerase compare
PP_0643 +0.6 0.8 protein of unknown function compare
PP_2159 +0.6 1.1 Copper-binding protein, plastocyanin/azurin family compare
PP_0607 +0.6 1.2 putative Type IV pili biogenesis protein FimT compare
PP_5393 +0.6 0.5 putative metal-binding chaperone compare
PP_1038 +0.6 1.2 conserved protein of unknown function compare
PP_1429 +0.6 2.6 Sigma factor AlgU regulatory protein MucB compare
PP_1055 +0.6 1.0 Type II secretion pathway protein GspN compare
PP_3018 +0.6 1.6 conserved protein of unknown function compare
PP_5223 +0.6 2.0 regulator of nucleotide diphosphokinase compare
PP_0313 +0.5 1.6 putative electron transfer flavoprotein beta subunit compare
PP_2595 +0.5 2.6 putative ABC transporter, permease/ATP-binding protein compare
PP_1687 +0.5 2.9 conserved exported protein of unknown function compare
PP_2434 +0.5 2.5 conserved protein of unknown function compare
PP_2847 +0.5 0.6 Urease accessory protein UreJ compare
PP_0972 +0.5 1.2 UPF0213 protein PP_0972 compare
PP_5274 +0.5 1.2 conserved protein of unknown function compare
PP_2922 +0.5 1.5 Urea amidolyase-related protein compare
PP_0900 +0.5 0.8 PAP2 family protein compare
PP_5587 +0.5 3.3 conserved protein of unknown function compare
PP_3138 +0.5 2.4 VirK domain protein compare
PP_3140 +0.5 2.3 Glycosyl transferase, group 2 family protein compare
PP_0616 +0.5 1.6 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_4038 +0.5 1.7 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_4710 +0.5 2.5 tRNA pseudouridine 55 synthase compare
PP_0566 +0.5 0.6 translation-related factor compare
PP_5313 +0.5 0.9 DNA-binding protein HU-alpha compare
PP_2355 +0.5 1.3 Response regulator receiver protein compare
PP_5331 +0.5 2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_3121 +0.5 1.0 transcriptional regulator, LysR family compare
PP_5381 +0.5 1.2 hypothetical protein compare
PP_1017 +0.5 1.6 mannose/glucose ABC transporter, permease protein compare
PP_5473 +0.5 1.1 putative transcriptional regulator, LuxR family compare
PP_1575 +0.5 1.0 conserved protein of unknown function compare
PP_4625 +0.5 1.0 anti-holin regulator of holin CidA compare
PP_0202 +0.5 1.7 CBS domain-containing protein compare
PP_3292 +0.5 2.3 conserved membrane protein of unknown function compare
PP_2632 +0.5 3.1 putative endoglucanase compare
PP_3504 +0.5 1.5 conserved protein of unknown function compare
PP_4199 +0.5 0.6 putative Lipoprotein compare
PP_3768 +0.5 1.9 putative shikimate 5-dehydrogenase compare
PP_5367 +0.5 1.7 Transketolase domain protein compare
PP_2950 +0.5 1.5 conserved protein of unknown function compare
PP_2000 +0.5 0.8 amidophosphoribosyl transferase compare
PP_1922 +0.5 1.8 conserved protein of unknown function compare
PP_2232 +0.5 1.6 XRE family transcriptional regulator compare
PP_2020 +0.5 3.3 putative Lipoprotein compare
PP_4246 +0.5 2.8 Periplasmic binding protein compare
PP_2900 +0.5 1.0 conserved protein of unknown function compare
PP_5667 +0.5 0.8 putative microcin B17-like-processing protein, McbC family compare
PP_1344 +0.5 0.4 conserved protein of unknown function compare
PP_2297 +0.5 2.5 putative integrative genetic element Ppu40, integrase compare
PP_5205 +0.5 1.8 conserved protein of unknown function compare
PP_t49 +0.5 1.9 tRNA-Met compare
PP_1255 +0.5 1.0 putative cis-4-hydroxy-D-proline oxidase compare
PP_4400 +0.5 1.7 Bkd operon transcriptional regulator compare
PP_1519 +0.5 2.4 putative Lipoprotein compare
PP_1275 +0.5 1.5 conserved protein of unknown function compare
PP_5048 +0.5 1.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3129 +0.5 2.3 UDP-glucose 4-epimerase compare
PP_4798 +0.5 1.8 putative Membrane-bound lytic murein transglycosylase compare
PP_1935 +0.5 1.3 Transcriptional regulator, Cro/CI family compare
PP_5457 +0.5 1.6 conserved protein of unknown function compare
PP_0865 +0.5 1.9 ECF subfamily RNA polymerase sigma-24 factor compare
PP_0555 +0.5 2.0 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
PP_1363 +0.5 1.9 conserved protein of unknown function compare
PP_5322 +0.5 1.6 putative metal ion transporter compare
PP_2208 +0.5 2.3 phosphonoacetaldehyde hydrolase compare
PP_4385 +0.5 1.4 flagellar basal-body rod protein FlgG compare
PP_3585 +0.5 2.3 multidrug efflux transport system - putative membrane fusion protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs across organisms