Experiment set25IT012 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -9.8 -15.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0396 -7.3 -10.0 conserved protein of unknown function compare
PP_1778 -7.2 -5.0 Lipopolysaccharide ABC export system, permease protein compare
PP_0395 -7.1 -9.7 putative type IV piliation protein compare
PP_1779 -6.6 -7.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4994 -6.4 -4.5 conserved protein of unknown function compare
PP_1198 -6.4 -4.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0164 -6.2 -4.3 conserved protein of unknown function compare
PP_1898 -6.1 -4.2 MotA/TolQ/ExbB proton channel family protein compare
PP_5502 -5.9 -5.6 ribosome modulation factor compare
PP_4058 -5.8 -8.0 1,4-alpha-glucan branching enzyme compare
PP_0397 -5.3 -16.2 protein kinase compare
PP_4902 -5.2 -3.6 Oligoribonuclease compare
PP_0547 -5.2 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0789 -4.8 -6.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0951 -4.6 -9.6 Ribosome hibernation promoting factor compare
PP_3821 -4.5 -10.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0406 -4.3 -3.0 Nucleotidyltransferase family protein compare
PP_4098 -4.3 -3.0 UvrABC system protein C compare
PP_5289 -4.0 -5.1 Acetylglutamate kinase compare
PP_2145 -4.0 -3.8 beta-N-acetylglucosaminidase compare
PP_4008 -3.9 -10.0 ATP-dependent serine protease compare
PP_1733 -3.8 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1428 -3.7 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_1319 -3.7 -6.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4943 -3.6 -3.5 putative Glycosyl transferase compare
PP_3649 -3.6 -4.9 Transcriptional regulator, GntR family compare
PP_5145 -3.6 -15.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4726 -3.6 -3.5 Chaperone protein DnaJ compare
PP_0846 -3.5 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_1317 -3.4 -5.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1355 -3.4 -9.1 Muropeptide permease AmpG compare
PP_0218 -3.4 -9.4 Sensory box protein compare
PP_3484 -3.3 -3.7 Response regulator receiver protein compare
PP_2402 -3.1 -3.0 putative Sensor histidine kinase compare
PP_1468 -3.0 -3.5 Tyrosine recombinase XerD compare
PP_1734 -3.0 -5.0 Probable septum site-determining protein MinC compare
PP_4396 -3.0 -3.3 conserved protein of unknown function compare
PP_4332 -3.0 -5.9 Chemotaxis protein CheW compare
PP_0949 -2.9 -6.1 putative ATP-binding protein UPF0042 compare
PP_4342 -2.8 -4.5 flagellar synthesis regulator, putative ATPase compare
PP_4944 -2.8 -5.4 Carbamoyltransferase compare
PP_0405 -2.7 -8.2 conserved protein of unknown function compare
PP_1215 -2.7 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4124 -2.6 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_0948 -2.6 -2.2 Phosphocarrier protein HPr compare
PP_0185 -2.6 -10.6 Positive alginate biosynthesis regulatory protein compare
PP_4358 -2.6 -7.5 flagellar synthesis, switching and energizing component compare
PP_4936 -2.6 -7.3 O-antigen polymerase compare
PP_4122 -2.5 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4940 -2.5 -7.0 Putative glycosyltransferase compare
PP_1318 -2.5 -5.4 Cytochrome b compare
PP_1763 -2.5 -3.1 putative oxidoreductase compare
PP_4131 -2.5 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_4392 -2.5 -6.6 chemotaxis protein methyltransferase compare
PP_2378 -2.4 -2.9 Fe/S biogenesis protein NfuA compare
PP_4341 -2.4 -10.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4337 -2.4 -4.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4964 -2.3 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4824 -2.3 -7.4 Sensor histidine kinase/response regulator compare
PP_1036 -2.3 -7.5 membrane-bound lytic murein transglycosylase F compare
PP_4941 -2.3 -6.4 conserved exported protein of unknown function compare
PP_5007 -2.2 -2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4375 -2.1 -7.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_5217 -2.1 -12.0 Polyphosphate kinase compare
PP_1344 -2.1 -2.1 conserved protein of unknown function compare
PP_4120 -2.1 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_2144 -2.1 -4.9 Transcriptional regulator, TetR family compare
PP_4369 -2.1 -5.3 Flagellar M-ring protein compare
PP_4804 -2.1 -1.4 RlpA-like lipoprotein compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5095 -2.1 -1.4 pyrroline-5-carboxylate reductase compare
PP_4379 -2.1 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5185 -2.1 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4391 -2.0 -5.4 flagellar basal-body rod protein FlgB compare
PP_0184 -2.0 -4.2 Argininosuccinate lyase compare
PP_4143 -2.0 -3.0 conserved protein of unknown function compare
PP_4355 -2.0 -2.2 flagellar export apparatus subunit compare
PP_4384 -2.0 -9.3 Flagellar L-ring protein compare
PP_4700 -2.0 -1.4 pantothenate synthetase compare
PP_4356 -2.0 -3.8 Flagellar protein FliO compare
PP_1783 -2.0 -1.4 dTDP-glucose pyrophosphorylase compare
PP_4338 -2.0 -6.9 Chemotaxis histidine kinase CheA compare
PP_1088 -2.0 -7.8 Argininosuccinate synthase compare
PP_0888 -1.9 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_4121 -1.9 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4370 -1.9 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_4378 -1.9 -10.5 flagellin, filament structural protein compare
PP_4368 -1.9 -4.4 flagellar motor switch protein compare
PP_4352 -1.9 -10.0 flagellin export apparatus, substrate specificity protein compare
PP_4340 -1.9 -3.7 response regulator for chemotactic signal transduction compare
PP_1493 -1.9 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4129 -1.8 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0123 -1.8 -6.6 DNA polymerase I, 5 compare
PP_0435 -1.8 -5.6 Peptidase, M23/M37 family compare
PP_4130 -1.8 -5.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4380 -1.8 -9.5 Flagellar hook-associated protein FlgL compare
PP_4353 -1.8 -5.1 Flagellar biosynthetic protein fliR compare
PP_5350 -1.8 -2.7 Transcriptional regulator, RpiR family compare
PP_4993 -1.8 -4.7 Glutathione synthetase compare
PP_2280 -1.8 -3.4 conserved protein of unknown function compare
PP_1598 -1.8 -3.5 regulatory intramembrane protein RIP zinc protease compare
PP_4390 -1.8 -8.7 flagellar basal-body rod protein FlgC compare
PP_4365 -1.8 -2.7 Flagellar protein FliJ compare
PP_4344 -1.8 -7.7 flagellar export pore protein compare
PP_4382 -1.8 -6.1 Peptidoglycan hydrolase FlgJ compare
PP_4874 -1.8 -1.7 50S ribosomal protein L9 compare
PP_4381 -1.8 -9.1 Flagellar hook-associated protein FlgK compare
PP_0434 -1.7 -4.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4366 -1.7 -6.1 flagellum-specific ATP synthase compare
PP_4376 -1.7 -8.6 flagellar filament capping protein compare
PP_4126 -1.7 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_2030 -1.7 -3.4 conserved protein of unknown function compare
PP_4385 -1.7 -5.6 flagellar basal-body rod protein FlgG compare
PP_4642 -1.7 -1.5 Cyclic diguanosine monophosphate-binding protein compare
PP_5155 -1.6 -2.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5337 -1.6 -4.3 LysR family transcriptional regulator compare
PP_2302 -1.6 -3.4 DNA-binding, ATP-dependent protease compare
PP_0995 -1.6 -5.3 conserved membrane protein of unknown function compare
PP_4261 -1.6 -3.6 cation-transporting P-type ATPase compare
PP_4696 -1.6 -3.2 Nitrogen regulation protein NR(I) compare
PP_5028 -1.5 -3.1 proline iminopeptidase compare
PP_4880 -1.5 -7.5 exoribonuclease R compare
PP_4389 -1.5 -5.9 Flagellar basal-body rod modification protein FlgD compare
PP_5279 -1.5 -3.3 conserved protein of unknown function compare
PP_4354 -1.5 -2.6 flagellar export apparatus subunit compare
PP_1994 -1.5 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_0191 -1.5 -3.1 Transcriptional regulatory protein AlgQ compare
PP_0414 -1.5 -4.3 Polyamine ABC transporter, permease protein compare
PP_4383 -1.5 -3.7 Flagellar P-ring protein compare
PP_5146 -1.5 -4.7 RNA pyrophosphohydrolase compare
PP_0673 -1.5 -1.4 conserved protein of unknown function compare
PP_4555 -1.5 -2.0 conserved protein of unknown function compare
PP_1729 -1.4 -2.0 conserved protein of unknown function compare
PP_4546 -1.4 -3.7 ATP-dependent helicase HrpA compare
PP_4004 -1.4 -3.6 DNA translocase FtsK compare
PP_4388 -1.4 -7.8 Flagellar hook protein FlgE compare
PP_0307 -1.4 -3.1 conserved exported protein of unknown function compare
PP_4394 -1.4 -4.2 flagella basal body P-ring formation protein compare
PP_4262 -1.4 -2.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2027 -1.4 -3.9 conserved exported protein of unknown function compare
PP_1232 -1.3 -4.0 conserved exported protein of unknown function compare
PP_4263 -1.3 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0126 -1.3 -3.6 Cytochrome c4 compare
PP_5329 -1.3 -1.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5216 -1.3 -1.7 exopolyphosphatase compare
PP_2433 -1.3 -2.1 conserved protein of unknown function compare
PP_2646 -1.2 -3.1 conserved protein of unknown function compare
PP_1216 -1.2 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4917 -1.2 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3105 -1.2 -1.3 conserved membrane protein of unknown function compare
PP_2214 -1.2 -2.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0065 -1.2 -2.7 NAD-binding component of TrK potassium transporter compare
PP_t10 -1.2 -1.6 tRNA-Pro compare
PP_4528 -1.2 -1.5 conserved protein of unknown function compare
PP_1860 -1.2 -3.1 Organic hydroperoxide resistance transcriptional regulator compare
PP_4343 -1.2 -3.2 Flagellar biosynthesis protein FlhF compare
PP_0401 -1.2 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4386 -1.2 -5.0 flagellar basal-body rod protein FlgF compare
PP_5317 -1.2 -2.7 Probable chorismate pyruvate-lyase compare
PP_0832 -1.2 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5652 -1.2 -2.3 conserved protein of unknown function, phage origin compare
PP_0914 -1.2 -5.0 GGDEF domain protein compare
PP_4367 -1.1 -2.9 Flagellar assembly protein FliH compare
PP_5422 -1.1 -3.4 hypothetical protein compare
PP_4989 -1.1 -2.3 Protein PilJ compare
PP_3899 -1.1 -1.5 conserved protein of unknown function, hicB family compare
PP_4938 -1.1 -4.7 putative Glycosyl transferase compare
PP_1293 -1.1 -1.1 molybdopterin synthase small subunit compare
PP_2336 -1.1 -1.5 aconitate hydratase 1 compare
PP_5483 -1.1 -1.9 conserved protein of unknown function compare
PP_4517 -1.1 -1.9 conserved protein of unknown function compare
PP_1058 -1.1 -7.8 conserved protein of unknown function compare
PP_0984 -1.1 -2.5 conserved membrane protein of unknown function compare
PP_5090 -1.1 -2.1 putative cell division protein compare
PP_2029 -1.1 -2.3 von Willebrand factor type A domain protein compare
PP_5084 -1.1 -4.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4361 -1.1 -3.0 Flagellar hook-length control protein FliK compare
PP_0339 -1.1 -0.7 Pyruvate dehydrogenase E1 component compare
PP_2568 -1.1 -1.2 Ring-cleaving dioxygenase compare
PP_0484 -1.1 -2.8 transporter of an unknown substrate compare
PP_2976 -1.1 -1.5 putative transposase compare
PP_1986 -1.1 -2.2 3-isopropylmalate dehydratase small subunit compare
PP_4480 -1.1 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_4560 -1.0 -1.8 putative Ribonuclease BN compare
PP_4848 -1.0 -1.9 Curved DNA-binding protein compare
PP_4334 -1.0 -4.9 ParA family protein compare
PP_5328 -1.0 -1.5 putative phosphate transport system permease protein compare
PP_4829 -1.0 -3.0 putative precorrin-3B synthase compare
PP_5338 -1.0 -2.0 aspartate ammonia-lyase compare
PP_4471 -1.0 -2.6 Magnesium transporter compare
PP_2028 -1.0 -2.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4532 -1.0 -1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1353 -1.0 -1.5 conserved membrane protein of unknown function compare
PP_4060 -1.0 -6.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4333 -1.0 -2.9 CheW domain protein compare
PP_1804 -1.0 -5.0 Glycosyl transferase WbpL compare
PP_5486 -1.0 -1.6 conserved protein of unknown function compare
PP_3132 -1.0 -3.4 putative Polysaccharide transporter compare
PP_2031 -1.0 -1.0 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs across organisms