Experiment set25IT012 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.7 10.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.3 6.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4099 +2.8 18.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +2.7 23.1 Sensor protein GacS compare
PP_1562 +1.6 5.0 putative Phage terminase, small subunit compare
PP_0855 +1.4 4.6 conserved protein of unknown function compare
PP_4136 +1.4 1.1 Transcriptional regulator, LuxR family compare
PP_4171 +1.3 9.8 conserved exported protein of unknown function compare
PP_0593 +1.3 2.1 putative ribosome-binding factor compare
PP_1553 +1.0 1.7 conserved protein of unknown function compare
PP_0293 +1.0 2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3810 +1.0 2.4 conserved protein of unknown function compare
PP_3365 +1.0 2.0 Acetolactate synthase compare
PP_5654 +1.0 2.4 putative phosphotriesterase compare
PP_5528 +0.9 2.2 conserved protein of unknown function compare
PP_2880 +0.9 3.1 Transcriptional regulator, TetR family compare
PP_0166 +0.9 7.5 HlyD family secretion protein compare
PP_3938 +0.9 2.6 conserved protein of unknown function compare
PP_3971 +0.9 1.6 conserved protein of unknown function compare
PP_2747 +0.9 2.5 conserved protein of unknown function compare
PP_0794 +0.9 2.8 1-phosphofructokinase monomer compare
PP_4238 +0.9 3.8 conserved protein of unknown function compare
PP_0167 +0.9 7.4 Toxin secretion ATP-binding protein compare
PP_4925 +0.9 2.9 conserved protein of unknown function compare
PP_4217 +0.9 7.7 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4846 +0.8 3.7 L-amino acid N-acyltransferase compare
PP_0168 +0.8 7.6 putative surface adhesion protein compare
PP_4409 +0.8 3.9 Site-specific recombinase, phage integrase family compare
PP_0165 +0.8 6.8 GGDEF domain protein compare
PP_4329 +0.8 2.7 FlhB domain protein compare
PP_0566 +0.8 1.2 translation-related factor compare
PP_4196 +0.8 1.9 conserved exported protein of unknown function compare
PP_2950 +0.8 2.9 conserved protein of unknown function compare
PP_0962 +0.8 3.3 toluene-tolerance protein compare
PP_5610 +0.8 1.8 protein of unknown function compare
PP_0703 +0.8 2.1 putative Transmembrane sensor compare
PP_3880 +0.8 1.7 conserved exported protein of unknown function compare
PP_4519 +0.7 6.0 Agglutination protein compare
PP_4660 +0.7 3.2 Transcriptional regulator, LysR family compare
PP_2459 +0.7 2.3 ribose pyranase compare
PP_3419 +0.7 2.7 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_1489 +0.7 3.0 CheW domain protein compare
PP_1020 +0.7 1.5 putative glucose-6-phosphate 1-epimerase compare
PP_5054 +0.7 1.9 glutaredoxin 3 compare
PP_4999 +0.7 0.3 dihydroorotase-like protein compare
PP_5505 +0.7 1.6 conserved transmembrane protein of unknown function compare
PP_5666 +0.7 3.0 putative microcin B17-like processing protein, McbB family compare
PP_5604 +0.7 2.0 putative subtilisin-like serine protease compare
PP_0916 +0.7 1.4 Amino acid transporter LysE compare
PP_2060 +0.7 1.9 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0035 +0.7 1.4 putative bactoprenol-linked glycose transferase compare
PP_0086 +0.7 1.7 conserved protein of unknown function compare
PP_0640 +0.7 2.5 conserved protein of unknown function compare
PP_4710 +0.6 3.3 tRNA pseudouridine 55 synthase compare
PP_1568 +0.6 1.0 conserved protein of unknown function compare
PP_3903 +0.6 1.0 conserved protein of unknown function compare
PP_4799 +0.6 0.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4890 +0.6 2.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0048 +0.6 1.2 conserved protein of unknown function compare
PP_3312 +0.6 1.3 putative Heat shock protein compare
PP_1366 +0.6 0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_1299 +0.6 3.3 putative amino acid ABC transporter - membrane subunit compare
PP_0900 +0.6 1.6 PAP2 family protein compare
PP_5717 +0.6 2.3 conserved protein of unknown function compare
PP_0672 +0.6 5.2 Sensory box protein compare
PP_1155 +0.6 2.5 YaiC/YhcK/ArdA family protein compare
PP_0999 +0.6 1.5 carbamate kinase compare
PP_1787 +0.6 2.8 conserved protein of unknown function compare
PP_0958 +0.6 2.7 phospholipid ABC transporter ATP-binding subunit compare
PP_4406 +0.6 1.4 conserved protein of unknown function compare
PP_1892 +0.6 0.8 conserved protein of unknown function compare
PP_3541 +0.6 1.9 Transporter, MgtC family compare
PP_0319 +0.6 1.3 conserved protein of unknown function compare
PP_2503 +0.6 2.6 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_3098 +0.6 0.9 conserved protein of unknown function compare
PP_1381 +0.6 1.0 4-carboxymuconolactone decarboxylase compare
PP_1556 +0.6 2.4 conserved protein of unknown function compare
PP_4156 +0.6 1.4 Transcriptional regulator, LysR family compare
PP_4246 +0.6 3.7 Periplasmic binding protein compare
PP_1190 +0.6 1.5 conserved protein of unknown function compare
PP_4502 +0.6 2.9 putative enzyme compare
PP_0683 +0.6 1.7 conserved protein of unknown function compare
PP_5508 +0.6 1.0 conserved protein of unknown function compare
PP_5429 +0.6 2.1 protein of unknown function compare
PP_2612 +0.6 1.6 conserved membrane protein of unknown function compare
PP_0220 +0.6 1.7 methionine import ATP-binding protein metN2 compare
PP_5619 +0.6 2.1 protein of unknown function compare
PP_0425 +0.6 1.7 conserved protein of unknown function compare
PP_1633 +0.6 1.7 conserved exported protein of unknown function compare
PP_0677 +0.5 1.6 putative Lipoprotein compare
PP_5603 +0.5 1.9 putative FAD dependent oxidoreductase compare
PP_4843 +0.5 2.6 putative Urea ABC transporter, permease protein compare
PP_4373 +0.5 4.6 Transcriptional regulator FleQ compare
PP_5687 +0.5 1.6 putative permease of the major facilitator superfamily compare
PP_0064 +0.5 1.7 conserved protein of unknown function compare
PP_4986 +0.5 2.2 Channel protein, hemolysin III family compare
PP_2110 +0.5 2.5 putative ribosomal large subunit pseudouridine synthase compare
PP_0210 +0.5 2.7 putative Phycobiliprotein compare
PP_3333 +0.5 1.1 conserved protein of unknown function compare
PP_4835 +0.5 0.9 conserved exported protein of unknown function compare
PP_1501 +0.5 1.8 conserved protein of unknown function compare
PP_4569 +0.5 1.4 conserved protein of unknown function compare
PP_4173 +0.5 3.4 Sensor histidine kinase/response regulator compare
PP_0574 +0.5 3.9 DNA-binding response regulator, LuxR family compare
PP_5098 +0.5 3.0 methionine biosynthesis protein MetW compare
PP_0698 +0.5 2.9 Transcriptional regulator, LysR family compare
PP_1124 +0.5 1.1 conserved membrane protein of unknown function compare
PP_1575 +0.5 1.5 conserved protein of unknown function compare
PP_2750 +0.5 1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1479 +0.5 1.3 HicB protein compare
PP_2506 +0.5 2.4 conserved membrane protein of unknown function compare
PP_0929 +0.5 2.1 putative Lipoprotein compare
PP_3913 +0.5 2.5 protein of unknown function compare
PP_4100 +0.5 2.3 Transcriptional regulator, Cro/CI family compare
PP_2044 +0.5 1.1 conserved inner membrane protein of unknown function compare
PP_1824 +0.5 0.8 Smr domain protein compare
PP_5143 +0.5 1.2 conserved membrane protein of unknown function compare
PP_1494 +0.5 2.4 Response regulator/GGDEF domain protein compare
PP_2388 +0.5 1.3 Transporter, LysE family compare
PP_t49 +0.5 1.7 tRNA-Met compare
PP_1546 +0.5 1.5 conserved protein of unknown function compare
PP_1454 +0.5 0.9 conserved protein of unknown function compare
PP_5491 +0.5 1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_4945 +0.5 2.4 23S rRNA m(6)A2030 methyltransferase compare
PP_1012 +0.5 2.1 DNA-binding response regulator compare
PP_0869 +0.5 1.4 osmoprotectant ABC transporter permease subunit compare
PP_0276 +0.5 0.8 Transcriptional regulator, Cro/CI family compare
PP_3951 +0.5 2.4 3-oxoadipate CoA-transferase subunit A compare
PP_2882 +0.5 2.2 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_0859 +0.5 2.6 putative ketoglutaramate omega-amidase compare
PP_3676 +0.5 2.6 conserved protein of unknown function compare
PP_4435 +0.5 1.9 conserved protein of unknown function compare
PP_1829 +0.5 0.8 Hydrolase, alpha/beta fold family compare
PP_5598 +0.5 1.4 conserved protein of unknown function compare
PP_0921 +0.5 1.3 Transcriptional regulator, ArsR family compare
PP_2748 +0.5 1.5 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4957 +0.5 2.5 conserved protein of unknown function compare
PP_2899 +0.5 1.1 conserved exported protein of unknown function compare
PP_0304 +0.5 2.4 Carnitine uptake ABC transporter, periplasmic component compare
PP_1554 +0.5 1.3 conserved protein of unknown function compare
PP_2124 +0.5 1.8 putative Glycosyl transferase compare
PP_5533 +0.5 1.0 conserved protein of unknown function compare
PP_1265 +0.5 0.9 conserved protein of unknown function compare
PP_1238 +0.5 1.4 putative Lipoprotein compare
PP_2633 +0.5 0.6 conserved protein of unknown function compare
PP_0054 +0.5 2.0 conserved membrane protein of unknown function compare
PP_5625 +0.5 1.5 conserved protein of unknown function compare
PP_3804 +0.5 2.4 conserved exported protein of unknown function compare
PP_2322 +0.5 3.2 Major outer membrane lipoprotein compare
PP_4656 +0.5 3.1 protocatechuate 3,4-dioxygenase beta chain compare
PP_2390 +0.5 2.7 Transcriptional regulator, LysR family compare
PP_4871 +0.5 1.8 putative lysine decarboxylase family protein compare
PP_2342 +0.5 1.5 conserved protein of unknown function compare
PP_3060 +0.5 2.2 putative tail sheath protein compare
PP_0201 +0.5 2.1 conserved protein of unknown function compare
PP_4273 +0.5 0.9 Transcriptional regulator, MerR family compare
PP_1004 +0.5 1.1 conserved protein of unknown function compare
PP_2916 +0.5 1.5 riboflavin synthase compare
PP_0685 +0.5 1.2 conserved protein of unknown function compare
PP_3684 +0.5 1.0 conserved protein of unknown function compare
PP_0878 +0.5 1.9 dipeptide ABC transporter, binding subunit compare
PP_1167 +0.5 1.9 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_0040 +0.5 1.3 hypothetical protein compare
PP_4966 +0.5 1.2 transcriptional regulator of methionine metabolism compare
PP_0750 +0.4 2.4 conserved protein of unknown function compare
PP_5393 +0.4 0.9 putative metal-binding chaperone compare
PP_0029 +0.4 2.3 two component heavy metal response regulator compare
PP_4271 +0.4 0.6 conserved protein of unknown function compare
PP_2559 +0.4 1.5 Metalloprotease secretion protein compare
PP_4426 +0.4 1.3 Amino acid ABC transporter, permease protein compare
PP_1690 +0.4 1.4 conserved protein of unknown function compare
PP_5569 +0.4 1.1 protein of unknown function of phage origin compare
PP_3762 +0.4 1.6 Response regulator compare
PP_3237 +0.4 1.0 Universal stress protein family compare
PP_3021 +0.4 2.8 Transporter, LysE family compare
PP_3766 +0.4 1.1 Lactoylglutathione lyase compare
PP_0353 +0.4 2.2 Exonuclease compare
PP_3110 +0.4 1.1 protein of unknown function compare
PP_1528 +0.4 0.7 conserved protein of unknown function compare
PP_5201 +0.4 1.0 conserved protein of unknown function, UPF0149 family compare
PP_2760 +0.4 1.8 putative ribose transport permease protein compare
PP_5023 +0.4 1.9 Amino acid ABC transporter, permease protein compare
PP_0209 +0.4 1.5 ATP-binding taurine transporter subunit compare
PP_3585 +0.4 2.2 multidrug efflux transport system - putative membrane fusion protein compare
PP_5674 +0.4 1.1 conserved protein of unknown function compare
PP_5453 +0.4 1.1 conserved protein of unknown function compare
PP_1566 +0.4 1.5 Peptidase U35 compare
PP_4868 +0.4 2.0 Nicotinate phosphoribosyltransferase compare
PP_1544 +0.4 1.8 conserved protein of unknown function compare
PP_1683 +0.4 1.1 Transcriptional regulator, MarR family compare
PP_2118 +0.4 0.9 conserved protein of unknown function compare
PP_2740 +0.4 1.0 Transcriptional regulator, MerR family compare
PP_5324 +0.4 1.2 Response regulator compare
PP_2341 +0.4 1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4529 +0.4 1.3 conserved protein of unknown function compare
PP_1076 +0.4 1.4 aquaglyceroporin compare
PP_1574 +0.4 1.7 conserved protein of unknown function compare
PP_1310 +0.4 0.9 conserved hypothetical protein compare
PP_0611 +0.4 2.2 Type IV pili biogenesis protein PilE compare
PP_1241 +0.4 1.9 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs across organisms