Experiment set25IT011 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.1 10.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.5 6.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +2.3 17.0 Sensor protein GacS compare
PP_4099 +2.2 14.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3726 +1.2 2.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_5571 +1.0 2.0 conserved protein of unknown function compare
PP_4171 +1.0 8.0 conserved exported protein of unknown function compare
PP_4271 +1.0 1.6 conserved protein of unknown function compare
PP_3892 +1.0 2.0 conserved protein of unknown function compare
PP_2970 +1.0 2.8 conserved exported protein of unknown function compare
PP_2894 +0.9 2.9 conserved protein of unknown function compare
PP_1410 +0.9 1.9 conserved protein of unknown function compare
PP_1713 +0.9 2.2 Transcriptional regulator PcaQ compare
PP_3241 +0.9 1.6 conserved exported protein of unknown function compare
PP_2137 +0.8 2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_3693 +0.8 2.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2633 +0.8 1.4 conserved protein of unknown function compare
PP_5093 +0.8 2.0 twitching motility protein compare
PP_3551 +0.8 2.0 DNA-binding response regulator, LuxR family compare
PP_1922 +0.8 3.8 conserved protein of unknown function compare
PP_1508 +0.8 3.1 conserved protein of unknown function compare
PP_1892 +0.8 2.8 conserved protein of unknown function compare
PP_1366 +0.8 1.7 Transcriptional regulator MvaT, P16 subunit compare
PP_0167 +0.8 6.7 Toxin secretion ATP-binding protein compare
PP_0319 +0.8 0.8 conserved protein of unknown function compare
PP_5331 +0.8 2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_2462 +0.7 1.9 conserved protein of unknown function compare
PP_3904 +0.7 1.5 conserved protein of unknown function compare
PP_4217 +0.7 6.7 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_3346 +0.7 2.7 Nickel transporter ATP-binding protein compare
PP_4504 +0.7 1.9 conserved exported protein of unknown function compare
PP_0168 +0.7 6.5 putative surface adhesion protein compare
PP_3715 +0.7 1.8 Muconate cycloisomerase 1 compare
PP_0166 +0.7 5.4 HlyD family secretion protein compare
PP_0972 +0.7 1.6 UPF0213 protein PP_0972 compare
PP_4519 +0.7 5.6 Agglutination protein compare
PP_2899 +0.7 0.6 conserved exported protein of unknown function compare
PP_0022 +0.7 1.1 hypothetical protein compare
PP_1020 +0.7 2.2 putative glucose-6-phosphate 1-epimerase compare
PP_0593 +0.7 1.0 putative ribosome-binding factor compare
PP_2000 +0.7 1.2 amidophosphoribosyl transferase compare
PP_0025 +0.6 1.2 hypothetical protein compare
PP_5311 +0.6 3.8 putative signal transduction protein compare
PP_2882 +0.6 1.5 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1562 +0.6 1.6 putative Phage terminase, small subunit compare
PP_5483 +0.6 1.9 conserved protein of unknown function compare
PP_5095 +0.6 0.7 pyrroline-5-carboxylate reductase compare
PP_2765 +0.6 2.1 putative Sulfonate monooxygenase MsuD compare
PP_1045 +0.6 1.7 Type II secretion pathway protein XcpP compare
PP_0947 +0.6 2.4 conserved membrane protein of unknown function compare
PP_0672 +0.6 4.9 Sensory box protein compare
PP_4528 +0.6 1.6 conserved protein of unknown function compare
PP_2764 +0.6 1.9 FMN reductase (NADPH) compare
PP_0210 +0.6 1.7 putative Phycobiliprotein compare
PP_1635 +0.6 3.0 DNA-binding response regulator compare
PP_5039 +0.6 0.9 conserved protein of unknown function compare
PP_4627 +0.6 2.5 transcriptional regulator, LysR family compare
PP_4424 +0.6 2.0 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2499 +0.6 1.3 conserved protein of unknown function compare
PP_2132 +0.6 2.4 Universal stress protein compare
PP_1644 +0.6 2.1 NAD(P)H dehydrogenase (quinone) compare
PP_5674 +0.6 1.5 conserved protein of unknown function compare
PP_2898 +0.6 1.7 conserved exported protein of unknown function compare
PP_4685 +0.6 3.2 conserved protein of unknown function compare
PP_2999 +0.6 1.1 Glyoxalase family protein compare
PP_5388 +0.6 2.0 probable exported copper efflux protein compare
PP_2060 +0.6 0.8 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5500 +0.6 2.0 protein of unknown function compare
PP_0874 +0.6 1.4 conserved protein of unknown function compare
PP_2291 +0.6 1.6 conserved protein of unknown function compare
PP_3239 +0.6 2.0 putative cointegrate resolution protein T Tn4652 compare
PP_2826 +0.5 2.1 Transcriptional regulator MexT compare
PP_0165 +0.5 4.6 GGDEF domain protein compare
PP_5528 +0.5 1.1 conserved protein of unknown function compare
PP_2575 +0.5 1.4 conserved exported protein of unknown function compare
PP_1633 +0.5 1.4 conserved exported protein of unknown function compare
PP_1561 +0.5 2.3 putative Phage holin compare
PP_3328 +0.5 1.2 putative Ring-cleaving dioxygenase compare
PP_5517 +0.5 2.6 conserved exported protein of unknown function compare
PP_4373 +0.5 4.0 Transcriptional regulator FleQ compare
PP_4630 +0.5 3.0 Transcriptional regulator, MerR family compare
PP_1381 +0.5 0.9 4-carboxymuconolactone decarboxylase compare
PP_1501 +0.5 2.3 conserved protein of unknown function compare
PP_4196 +0.5 1.4 conserved exported protein of unknown function compare
PP_4133 +0.5 1.2 Transcriptional regulator-related protein compare
PP_4631 +0.5 1.9 conserved protein of unknown function compare
PP_1855 +0.5 2.7 conserved exported protein of unknown function compare
PP_0921 +0.5 3.0 Transcriptional regulator, ArsR family compare
PP_3142 +0.5 3.3 putative Sugar transferase compare
PP_1454 +0.5 0.8 conserved protein of unknown function compare
PP_1967 +0.5 2.4 tRNA D-aminoacylase compare
PP_0999 +0.5 1.5 carbamate kinase compare
PP_4073 +0.5 1.1 conserved exported protein of unknown function compare
PP_0794 +0.5 2.5 1-phosphofructokinase monomer compare
PP_0627 +0.5 1.3 conserved protein of unknown function compare
PP_4400 +0.5 2.5 Bkd operon transcriptional regulator compare
PP_4464 +0.5 2.6 Transcriptional regulator, LysR family compare
PP_5687 +0.5 2.0 putative permease of the major facilitator superfamily compare
PP_4999 +0.5 0.2 dihydroorotase-like protein compare
PP_2857 +0.5 1.3 conserved exported protein of unknown function compare
PP_4629 +0.5 1.9 Sensory box protein compare
PP_0649 +0.5 2.4 MutT/nudix family protein compare
PP_3906 +0.5 1.5 conserved protein of unknown function compare
PP_4238 +0.5 1.1 conserved protein of unknown function compare
PP_4799 +0.5 0.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2054 +0.5 1.8 putative DNA-binding transcriptional regulator compare
PP_2231 +0.5 1.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0656 +0.5 2.1 putative Amino acid ABC transporter, permease protein compare
PP_5487 +0.5 1.6 conserved protein of unknown function compare
PP_4531 +0.5 1.5 conserved exported protein of unknown function compare
PP_5042 +0.5 2.0 conserved protein of unknown function compare
PP_2503 +0.5 2.1 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_5053 +0.5 2.3 Protein-export protein SecB compare
PP_3762 +0.5 2.3 Response regulator compare
PP_0989 +0.5 1.0 glycine cleavage system H protein 1 compare
PP_5161 +0.5 2.6 putative lysophospholipase compare
PP_4100 +0.5 2.6 Transcriptional regulator, Cro/CI family compare
PP_3757 +0.5 1.4 Chemotaxis protein CheY compare
PP_0153 +0.5 1.0 hypothetical protein compare
PP_2889 +0.5 2.6 putative Transmembrane regulator PrtR compare
PP_2454 +0.5 2.1 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_2681 +0.5 0.9 coenzyme PQQ synthesis protein D compare
PP_2832 +0.5 2.6 galactose-binding protein regulator compare
PP_3876 +0.5 1.2 conserved protein of unknown function compare
PP_5589 +0.5 2.0 protein of unknown function containing Rhs repeat-associated core domain compare
PP_2922 +0.5 1.5 Urea amidolyase-related protein compare
PP_0152 +0.5 1.2 conserved exported protein of unknown function compare
PP_4230 +0.4 2.8 conserved exported protein of unknown function compare
PP_3539 +0.4 1.6 putative Transcriptional regulator compare
PP_4132 +0.4 2.4 conserved protein of unknown function compare
PP_0087 +0.4 1.1 conserved exported protein of unknown function compare
PP_4254 +0.4 1.1 conserved protein of unknown function compare
PP_5017 +0.4 0.7 Sec-independent protein translocase protein TatB compare
PP_3825 +0.4 2.2 conserved protein of unknown function compare
PP_5701 +0.4 0.7 conserved protein of unknown function compare
PP_1293 +0.4 1.2 molybdopterin synthase small subunit compare
PP_1631 +0.4 2.6 conserved protein of unknown function compare
PP_3943 +0.4 2.5 N-formylmaleamate deformylase compare
PP_3407 +0.4 1.6 conserved protein of unknown function compare
PP_3924 +0.4 0.9 conserved protein of unknown function compare
PP_1679 +0.4 1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5256 +0.4 2.1 Cyclic nucleotide-binding protein compare
PP_3971 +0.4 0.8 conserved protein of unknown function compare
PP_0657 +0.4 2.4 putative Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_5625 +0.4 1.6 conserved protein of unknown function compare
PP_0150 +0.4 1.6 conserved exported protein of unknown function compare
PP_1000 +0.4 1.4 ornithine carbamoyltransferase, catabolic compare
PP_2530 +0.4 1.4 conserved protein of unknown function compare
PP_4500 +0.4 2.0 TrpH family protein compare
PP_1110 +0.4 1.6 serine acetyltransferase compare
PP_1299 +0.4 2.0 putative amino acid ABC transporter - membrane subunit compare
PP_3951 +0.4 2.0 3-oxoadipate CoA-transferase subunit A compare
PP_2581 +0.4 0.9 conserved protein of unknown function compare
PP_4228 +0.4 1.7 conserved protein of unknown function compare
PP_0848 +0.4 0.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5699 +0.4 2.0 putative iron uptake protein compare
PP_1459 +0.4 1.4 CBS domain protein compare
PP_1789 +0.4 1.5 Hydrolase, haloacid dehalogenase-like family compare
PP_1387 +0.4 1.8 Probable HTH-type transcriptional regulator TtgR compare
PP_4460 +0.4 2.4 Transcriptional regulator, LysR family compare
PP_4223 +0.4 0.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3938 +0.4 0.8 conserved protein of unknown function compare
PP_3398 +0.4 1.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1687 +0.4 2.1 conserved exported protein of unknown function compare
PP_4266 +0.4 1.6 Adenine phosphoribosyltransferase compare
PP_5551 +0.4 1.4 conserved protein of unknown function compare
PP_3903 +0.4 1.0 conserved protein of unknown function compare
PP_3617 +0.4 1.8 conserved membrane protein of unknown function compare
PP_5429 +0.4 1.8 protein of unknown function compare
PP_5224 +0.4 1.6 conserved protein of unknown function compare
PP_5457 +0.4 1.8 conserved protein of unknown function compare
PP_1455 +0.4 1.3 conserved protein of unknown function compare
PP_5659 +0.4 1.2 protein of unknown function compare
PP_4406 +0.4 1.6 conserved protein of unknown function compare
PP_3441 +0.4 2.2 conserved protein of unknown function compare
PP_4109 +0.4 1.0 conserved protein of unknown function compare
PP_5144 +0.4 1.6 conserved protein of unknown function compare
PP_0821 +0.4 1.6 conserved exported protein of unknown function compare
PP_5604 +0.4 0.7 putative subtilisin-like serine protease compare
PP_0534 +0.4 2.0 putative Transcriptional regulator PfeR compare
PP_0425 +0.4 1.6 conserved protein of unknown function compare
PP_0647 +0.4 2.0 conserved membrane protein of unknown function compare
PP_3831 +0.4 2.1 conserved protein of unknown function compare
PP_3837 +0.4 1.8 inner membrane protein of unknown function compare
PP_2500 +0.4 1.7 conserved protein of unknown function compare
PP_4705 +0.4 1.2 Glyoxalase compare
PP_2101 +0.4 1.9 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_1955 +0.4 2.4 Cytochrome P450 family protein compare
PP_1895 +0.4 1.2 putative ABC transporter - ATP binding subunit compare
PP_4561 +0.4 0.5 stress response protein compare
PP_3417 +0.4 1.3 D-gluconate transporter compare
PP_1583 +0.4 1.7 putative Structural protein P5 compare
PP_4688 +0.4 2.2 Heme/hemin ABC transporter, permease protein compare
PP_1736 +0.4 1.0 conserved protein of unknown function compare
PP_1554 +0.4 1.1 conserved protein of unknown function compare
PP_5519 +0.4 1.2 conserved protein of unknown function of phage origin compare
PP_3061 +0.4 1.4 conserved protein of unknown function compare
PP_2943 +0.4 1.7 putative Cytochrome c551 peroxidase compare
PP_2804 +0.4 1.4 Hydrolase, alpha/beta fold family compare
PP_4198 +0.4 1.5 OmpA family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs across organisms