Experiment set25IT010 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -8.5 -11.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_0396 -7.0 -9.5 conserved protein of unknown function compare
PP_4143 -6.9 -4.8 conserved protein of unknown function compare
PP_1779 -6.8 -4.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0397 -6.5 -16.4 protein kinase compare
PP_1778 -6.1 -8.4 Lipopolysaccharide ABC export system, permease protein compare
PP_3484 -6.1 -6.8 Response regulator receiver protein compare
PP_1198 -6.0 -4.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0164 -5.9 -4.1 conserved protein of unknown function compare
PP_4058 -5.8 -4.0 1,4-alpha-glucan branching enzyme compare
PP_1355 -5.7 -11.6 Muropeptide permease AmpG compare
PP_0395 -5.7 -15.6 putative type IV piliation protein compare
PP_1142 -5.4 -1.6 conserved protein of unknown function compare
PP_0547 -5.3 -3.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0789 -5.3 -5.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3821 -5.2 -10.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4008 -5.1 -7.0 ATP-dependent serine protease compare
PP_4936 -5.0 -10.0 O-antigen polymerase compare
PP_4902 -4.9 -3.4 Oligoribonuclease compare
PP_4943 -4.8 -3.1 putative Glycosyl transferase compare
PP_3649 -4.7 -6.4 Transcriptional regulator, GntR family compare
PP_5155 -4.6 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5185 -4.5 -6.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0405 -4.5 -10.5 conserved protein of unknown function compare
PP_2145 -4.5 -3.1 beta-N-acetylglucosaminidase compare
PP_0184 -4.3 -3.0 Argininosuccinate lyase compare
PP_4342 -4.3 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_4532 -4.2 -3.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1344 -4.1 -2.4 conserved protein of unknown function compare
PP_4696 -4.1 -2.8 Nitrogen regulation protein NR(I) compare
PP_4517 -4.1 -2.9 conserved protein of unknown function compare
PP_4944 -4.0 -4.8 Carbamoyltransferase compare
PP_0949 -4.0 -3.9 putative ATP-binding protein UPF0042 compare
PP_5145 -4.0 -12.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0406 -4.0 -2.7 Nucleotidyltransferase family protein compare
PP_1318 -3.9 -8.4 Cytochrome b compare
PP_1319 -3.9 -6.4 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0948 -3.9 -1.6 Phosphocarrier protein HPr compare
PP_4261 -3.8 -6.5 cation-transporting P-type ATPase compare
PP_0434 -3.6 -5.7 Anhydro-N-acetylmuramic acid kinase compare
PP_5289 -3.6 -3.7 Acetylglutamate kinase compare
PP_1088 -3.6 -10.4 Argininosuccinate synthase compare
PP_2402 -3.6 -2.5 putative Sensor histidine kinase compare
PP_4268 -3.6 -1.5 nucleoid-associated broad specificity regulator compare
PP_4726 -3.6 -3.1 Chaperone protein DnaJ compare
PP_1428 -3.4 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_4263 -3.4 -4.4 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0735 -3.4 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1898 -3.4 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1217 -3.3 -6.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3132 -3.3 -7.0 putative Polysaccharide transporter compare
PP_1237 -3.3 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4994 -3.3 -2.9 conserved protein of unknown function compare
PP_2121 -3.2 -2.6 putative Lipoprotein compare
PP_0846 -3.1 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_0984 -3.0 -3.4 conserved membrane protein of unknown function compare
PP_1468 -3.0 -2.0 Tyrosine recombinase XerD compare
PP_5393 -3.0 -1.8 putative metal-binding chaperone compare
PP_5337 -2.9 -6.2 LysR family transcriptional regulator compare
PP_5328 -2.9 -2.0 putative phosphate transport system permease protein compare
PP_0082 -2.9 -5.0 tryptophan synthase alpha chain compare
PP_3359 -2.9 -3.5 putative Hydroxycinnamic acid degradation regulator compare
PP_4941 -2.8 -6.7 conserved exported protein of unknown function compare
PP_5093 -2.8 -1.7 twitching motility protein compare
PP_4124 -2.8 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_4471 -2.8 -6.2 Magnesium transporter compare
PP_4253 -2.8 -2.7 cytochrome c oxidase subunit, cbb3-type compare
PP_3460 -2.7 -3.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4701 -2.6 -1.1 glucose-6-phosphate isomerase compare
PP_2160 -2.6 -4.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4997 -2.5 -1.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1214 -2.5 -2.5 putative transcriptional regulatory protein compare
PP_1317 -2.5 -4.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0951 -2.5 -4.0 Ribosome hibernation promoting factor compare
PP_4993 -2.5 -5.2 Glutathione synthetase compare
PP_5216 -2.5 -1.7 exopolyphosphatase compare
PP_4131 -2.4 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_5007 -2.4 -2.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4480 -2.4 -7.3 arginine N-succinyltransferase, subunit alpha compare
PP_3603 -2.4 -3.7 Transcriptional regulator, GntR family compare
PP_2144 -2.4 -3.8 Transcriptional regulator, TetR family compare
PP_4938 -2.4 -6.9 putative Glycosyl transferase compare
PP_4940 -2.4 -5.9 Putative glycosyltransferase compare
PP_4129 -2.4 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1716 -2.4 -2.2 Transcriptional regulator, Cro/CI family compare
PP_1186 -2.3 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_4880 -2.3 -9.4 exoribonuclease R compare
PP_1036 -2.3 -6.9 membrane-bound lytic murein transglycosylase F compare
PP_2378 -2.3 -2.7 Fe/S biogenesis protein NfuA compare
PP_1058 -2.3 -8.8 conserved protein of unknown function compare
PP_2773 -2.3 -1.5 conserved protein of unknown function compare
PP_2302 -2.3 -5.8 DNA-binding, ATP-dependent protease compare
PP_4204 -2.3 -4.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4909 -2.2 -5.5 phosphoserine phosphatase compare
PP_4964 -2.2 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4379 -2.2 -3.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1733 -2.2 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4370 -2.2 -2.6 Flagellar hook-basal body complex protein FliE compare
PP_5546 -2.2 -1.8 conserved protein of unknown function compare
PP_4824 -2.2 -6.4 Sensor histidine kinase/response regulator compare
PP_3930 -2.2 -1.8 conserved exported protein of unknown function compare
PP_4121 -2.1 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_2858 -2.1 -1.8 conserved exported protein of unknown function compare
PP_4130 -2.1 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2327 -2.1 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5028 -2.1 -3.4 proline iminopeptidase compare
PP_5338 -2.0 -2.9 aspartate ammonia-lyase compare
PP_5621 -2.0 -2.5 protein of unknown function compare
PP_1206 -2.0 -5.6 basic-amino-acid specific porin OprD compare
PP_4942 -2.0 -2.9 conserved protein of unknown function compare
PP_5533 -2.0 -1.5 conserved protein of unknown function compare
PP_0435 -2.0 -5.4 Peptidase, M23/M37 family compare
PP_3137 -2.0 -4.4 Glycosyl transferase, group 2 family protein compare
PP_0484 -2.0 -4.4 transporter of an unknown substrate compare
PP_4126 -2.0 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_0185 -1.9 -5.0 Positive alginate biosynthesis regulatory protein compare
PP_4546 -1.9 -3.6 ATP-dependent helicase HrpA compare
PP_2903 -1.9 -1.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3926 -1.9 -1.6 short-chain dehydrogenase compare
PP_1232 -1.9 -3.9 conserved exported protein of unknown function compare
PP_4120 -1.9 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_1208 -1.9 -1.8 conserved protein of unknown function, SlyX family compare
PP_2855 -1.8 -3.7 conserved exported protein of unknown function compare
PP_4368 -1.8 -4.2 flagellar motor switch protein compare
PP_t29 -1.8 -1.8 tRNA-Ala compare
PP_4561 -1.8 -0.9 stress response protein compare
PP_0123 -1.8 -6.0 DNA polymerase I, 5 compare
PP_5502 -1.8 -4.1 ribosome modulation factor compare
PP_3596 -1.8 -3.2 D-lysine oxidase compare
PP_3487 -1.8 -1.8 conserved exported protein of unknown function compare
PP_0293 -1.8 -1.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0393 -1.8 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4804 -1.8 -1.2 RlpA-like lipoprotein compare
PP_3833 -1.8 -2.9 Response regulator compare
PP_2337 -1.8 -2.2 aconitate isomerase compare
PP_3503 -1.8 -4.3 Sigma-54 dependent transcriptional regulator compare
PP_5014 -1.8 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_3519 -1.7 -1.0 putative Lipoprotein compare
PP_1734 -1.7 -2.4 Probable septum site-determining protein MinC compare
PP_4375 -1.7 -5.5 flagellar chaperone, inhibits premature FliC assembly compare
PP_1366 -1.7 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1362 -1.7 -2.4 pyruvate kinase II compare
PP_5084 -1.7 -5.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0214 -1.7 -4.6 4-aminobutyrate aminotransferase compare
PP_3411 -1.7 -1.1 conserved protein of unknown function compare
PP_5346 -1.7 -4.1 pyruvate carboxylase subunit B compare
PP_1783 -1.7 -1.2 dTDP-glucose pyrophosphorylase compare
PP_5217 -1.7 -9.1 Polyphosphate kinase compare
PP_4273 -1.7 -1.4 Transcriptional regulator, MerR family compare
PP_4150 -1.7 -3.4 microcin C transporter - ATP binding subunit compare
PP_1804 -1.7 -5.8 Glycosyl transferase WbpL compare
PP_0775 -1.7 -1.5 conserved protein of unknown function compare
PP_4700 -1.7 -1.2 pantothenate synthetase compare
PP_4098 -1.7 -2.0 UvrABC system protein C compare
PP_5580 -1.7 -1.8 protein of unknown function compare
PP_5045 -1.7 -2.9 tRNA sulfurtransferase compare
PP_t12 -1.7 -0.9 tRNA-Thr compare
PP_0872 -1.6 -5.0 Peptide chain release factor 3 compare
PP_4376 -1.6 -6.4 flagellar filament capping protein compare
PP_4891 -1.6 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4262 -1.6 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5022 -1.6 -1.5 Glutamine transport ATP-binding protein GlnQ compare
PP_4067 -1.6 -4.2 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4383 -1.6 -1.9 Flagellar P-ring protein compare
PP_0218 -1.6 -4.8 Sensory box protein compare
PP_4385 -1.6 -3.2 flagellar basal-body rod protein FlgG compare
PP_2853 -1.6 -5.9 conserved exported protein of unknown function compare
PP_2433 -1.6 -1.1 conserved protein of unknown function compare
PP_2030 -1.6 -2.8 conserved protein of unknown function compare
PP_5313 -1.6 -2.2 DNA-binding protein HU-alpha compare
PP_1215 -1.6 -0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_4591 -1.6 -2.1 Ribonuclease D compare
PP_2336 -1.6 -1.1 aconitate hydratase 1 compare
PP_2168 -1.5 -4.1 Transaldolase compare
PP_4386 -1.5 -4.0 flagellar basal-body rod protein FlgF compare
PP_4344 -1.5 -5.6 flagellar export pore protein compare
PP_4343 -1.5 -3.5 Flagellar biosynthesis protein FlhF compare
PP_4060 -1.5 -6.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_t11 -1.5 -1.9 tRNA-Lys compare
PP_4892 -1.5 -4.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3128 -1.5 -4.7 putative Exopolysaccharide biosynthesis/transport protein compare
PP_4382 -1.5 -5.8 Peptidoglycan hydrolase FlgJ compare
PP_5041 -1.5 -5.8 glycogen phosphorylase compare
PP_4642 -1.5 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_4069 -1.5 -2.4 conserved protein of unknown function compare
PP_5329 -1.5 -1.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0022 -1.5 -0.9 hypothetical protein compare
PP_2027 -1.5 -2.8 conserved exported protein of unknown function compare
PP_0978 -1.5 -0.8 conserved protein of unknown function compare
PP_4829 -1.5 -1.7 putative precorrin-3B synthase compare
PP_1268 -1.4 -1.4 putative HtrA suppressor protein sohA compare
PP_5121 -1.4 -2.0 conserved exported protein of unknown function compare
PP_5327 -1.4 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_2028 -1.4 -2.0 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4988 -1.4 -5.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4782 -1.4 -1.8 Phosphomethylpyrimidine kinase compare
PP_2854 -1.4 -2.5 conserved exported protein of unknown function compare
PP_4065 -1.4 -4.1 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_0386 -1.4 -6.4 Sensory box protein compare
PP_2122 -1.4 -2.0 molybdenum cofactor biosynthesis protein B compare


Specific Phenotypes

For 6 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs across organisms