Experiment set25IT009 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_4364 +4.0 24.0 putative Anti-sigma F factor antagonist compare
PP_1656 +3.6 9.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_2390 +3.3 22.9 Transcriptional regulator, LysR family compare
PP_1650 +3.0 21.3 Sensor protein GacS compare
PP_4099 +2.9 17.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1655 +2.9 8.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0914 +2.3 14.6 GGDEF domain protein compare
PP_5571 +2.2 4.0 conserved protein of unknown function compare
PP_4734 +2.1 11.5 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_3258 +1.8 1.4 conserved protein of unknown function compare
PP_0195 +1.7 4.3 conserved protein of unknown function compare
PP_4171 +1.6 10.5 conserved exported protein of unknown function compare
PP_3938 +1.5 1.1 conserved protein of unknown function compare
PP_4094 +1.5 2.2 conserved protein of unknown function compare
PP_4961 +1.5 1.5 putative Lipoprotein compare
PP_2462 +1.4 1.7 conserved protein of unknown function compare
PP_1344 +1.4 1.6 conserved protein of unknown function compare
PP_1186 +1.3 2.2 two component system DNA-binding transcriptional dual regulator compare
PP_5582 +1.3 2.1 conserved protein of unknown function compare
PP_0319 +1.3 0.9 conserved protein of unknown function compare
PP_3411 +1.3 2.2 conserved protein of unknown function compare
PP_4999 +1.2 0.5 dihydroorotase-like protein compare
PP_5017 +1.2 1.5 Sec-independent protein translocase protein TatB compare
PP_1736 +1.2 1.4 conserved protein of unknown function compare
PP_3892 +1.2 1.6 conserved protein of unknown function compare
PP_4799 +1.2 0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5241 +1.2 1.5 DNA-binding response regulator, LuxR family compare
PP_3726 +1.2 1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_1528 +1.2 1.7 conserved protein of unknown function compare
PP_1366 +1.1 0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_0874 +1.1 2.6 conserved protein of unknown function compare
PP_1211 +1.1 2.0 conserved protein of unknown function compare
PP_5491 +1.1 2.8 conserved protein of unknown function with SEC-C motif domain compare
PP_2107 +1.1 1.1 conserved protein of unknown function compare
PP_5383 +1.1 3.8 transcriptional activator protein compare
PP_0206 +1.1 3.5 Ferredoxin, 4Fe-4S compare
PP_1713 +1.1 1.2 Transcriptional regulator PcaQ compare
PP_1038 +1.0 2.2 conserved protein of unknown function compare
PP_3971 +1.0 1.8 conserved protein of unknown function compare
PP_5557 +1.0 1.6 protein of unknown function compare
PP_0979 +1.0 1.2 DNA polymerase III subunit chi compare
PP_0232 +1.0 1.5 ATP-binding taurine transporter subunit compare
PP_3551 +1.0 1.8 DNA-binding response regulator, LuxR family compare
PP_2633 +1.0 1.2 conserved protein of unknown function compare
PP_1054 +1.0 2.4 Type II secretion pathway protein XcpZ compare
PP_1994 +0.9 1.2 tRNA pseudouridine (38-40)synthase compare
PP_1479 +0.9 3.3 HicB protein compare
PP_0575 +0.9 3.0 conserved membrane protein of unknown function compare
PP_5519 +0.9 1.1 conserved protein of unknown function of phage origin compare
PP_2683 +0.9 1.9 putative sensory box histidine kinase/response regulator compare
PP_0762 +0.9 3.0 Glycerate dehydrogenase compare
PP_1110 +0.9 1.8 serine acetyltransferase compare
PP_2880 +0.9 0.9 Transcriptional regulator, TetR family compare
PP_5725 +0.9 1.6 protein of unknown function compare
PP_1568 +0.9 1.0 conserved protein of unknown function compare
PP_0574 +0.9 5.1 DNA-binding response regulator, LuxR family compare
PP_0025 +0.8 1.0 hypothetical protein compare
PP_2804 +0.8 1.3 Hydrolase, alpha/beta fold family compare
PP_0611 +0.8 2.5 Type IV pili biogenesis protein PilE compare
PP_3328 +0.8 1.8 putative Ring-cleaving dioxygenase compare
PP_4720 +0.8 1.4 putative RNA binding protein compare
PP_5462 +0.8 3.1 conserved protein of unknown function compare
PP_3864 +0.8 1.6 putative Phage FluMu DNA circulation protein compare
PP_0241 +0.8 1.0 Transporter compare
PP_0335 +0.8 1.9 Glutathione S-transferase family protein compare
PP_2517 +0.8 2.8 porin-like protein compare
PP_4225 +0.8 2.8 two component system DNA-binding transcriptional activator QseB compare
PP_1269 +0.8 0.9 Universal stress protein family compare
PP_4743 +0.8 1.9 conserved protein of unknown function compare
PP_4102 +0.8 1.4 conserved protein of unknown function compare
PP_1239 +0.8 1.7 Metallo-beta-lactamase family protein compare
PP_1442 +0.8 1.4 conserved protein of unknown function compare
PP_5706 +0.8 1.4 Sec translocation complex - SecG subunit compare
PP_2747 +0.8 1.0 conserved protein of unknown function compare
PP_5471 +0.8 1.2 putative response regulator receiver protein compare
PP_0856 +0.8 0.5 conserved lipoprotein of unknown function compare
PP_1982 +0.8 1.6 small heat shock protein IbpA compare
PP_1922 +0.8 1.7 conserved protein of unknown function compare
PP_4073 +0.8 1.3 conserved exported protein of unknown function compare
PP_3662 +0.8 2.9 conserved protein of unknown function compare
PP_5701 +0.7 0.8 conserved protein of unknown function compare
PP_2231 +0.7 1.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1291 +0.7 3.7 PhoH family protein compare
PP_1468 +0.7 0.5 Tyrosine recombinase XerD compare
PP_4760 +0.7 1.5 Alcohol dehydrogenase, zinc-containing compare
PP_2061 +0.7 1.2 conserved protein of unknown function compare
PP_0921 +0.7 1.2 Transcriptional regulator, ArsR family compare
PP_5110 +0.7 1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1275 +0.7 2.2 conserved protein of unknown function compare
PP_1556 +0.7 1.3 conserved protein of unknown function compare
PP_0891 +0.7 1.5 conserved exported protein of unknown function compare
PP_5522 +0.7 2.1 protein of unknown function compare
PP_0846 +0.7 0.5 DnaK-like molecular chaperone specific for IscU compare
PP_2046 +0.7 1.1 Transcriptional regulator, LysR family compare
PP_1138 +0.7 2.1 branched chain amino acid transporter - ATP binding subunit compare
PP_3098 +0.7 0.8 conserved protein of unknown function compare
PP_4151 +0.7 1.9 Excisionase domain protein compare
PP_1410 +0.7 0.9 conserved protein of unknown function compare
PP_4240 +0.7 1.7 putative Microcin b17 processing protein mcbd compare
PP_4818 +0.7 2.1 ribosomal protein L11 methyltransferase compare
PP_2474 +0.7 1.5 Glutathione S-transferase family protein compare
PP_3136 +0.7 1.4 putative O-acetyltransferase compare
PP_5127 +0.7 2.0 ribosomal RNA large subunit methyltransferase I compare
PP_2983 +0.7 2.1 conserved protein of unknown function compare
PP_1093 +0.7 2.2 putative electron transport complex protein compare
PP_2794 +0.7 1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1654 +0.7 0.5 cysteine synthase B compare
PP_4273 +0.7 0.8 Transcriptional regulator, MerR family compare
PP_1293 +0.7 1.1 molybdopterin synthase small subunit compare
PP_2181 +0.7 1.6 Transcriptional regulator, Cro/CI family compare
PP_2227 +0.7 2.0 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_2681 +0.7 1.3 coenzyme PQQ synthesis protein D compare
PP_5452 +0.7 1.8 protein of unknown function compare
PP_4208 +0.7 2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5640 +0.7 1.4 conserved protein of unknown function compare
PP_1761 +0.7 4.1 diguanylate cyclase with phosphodiesterase domain compare
PP_1346 +0.7 1.6 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4424 +0.7 1.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1814 +0.7 1.1 conserved protein of unknown function compare
PP_3477 +0.6 2.1 Putative secretion type II protein related to protein G compare
PP_4499 +0.6 2.3 putative maturation enzyme compare
PP_3365 +0.6 0.8 Acetolactate synthase compare
PP_0859 +0.6 2.4 putative ketoglutaramate omega-amidase compare
PP_t12 +0.6 0.6 tRNA-Thr compare
PP_2753 +0.6 1.2 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_3135 +0.6 2.5 putative Glycosyl transferase compare
PP_5467 +0.6 2.4 conserved exported protein of unknown function compare
PP_4163 +0.6 2.0 conserved exported protein of unknown function compare
PP_3672 +0.6 1.8 conserved protein of unknown function compare
PP_0694 +0.6 1.4 conserved protein of unknown function compare
PP_3247 +0.6 1.6 Transporter, bile acid/Na+ symporter family compare
PP_1466 +0.6 0.6 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_4419 +0.6 1.6 transposase compare
PP_1676 +0.6 1.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0239 +0.6 1.9 aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate compare
PP_2748 +0.6 0.7 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_1422 +0.6 2.4 conserved protein of unknown function compare
PP_2764 +0.6 1.0 FMN reductase (NADPH) compare
PP_1635 +0.6 1.2 DNA-binding response regulator compare
PP_5737 +0.6 3.1 conserved protein of unknown function compare
PP_1112 +0.6 2.7 conserved membrane protein of unknown function compare
PP_4693 +0.6 1.3 RNA polymerase-binding transcription factor DksA compare
PP_4723 +0.6 0.4 Carbamoyl-phosphate synthase large chain compare
PP_2226 +0.6 1.8 putative K(+)/H(+) antiporter subunit F compare
PP_2232 +0.6 1.6 XRE family transcriptional regulator compare
PP_1190 +0.6 1.6 conserved protein of unknown function compare
PP_5229 +0.6 1.3 conserved protein of unknown function compare
PP_1699 +0.6 1.4 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_4217 +0.6 4.7 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5617 +0.6 1.0 conserved protein of unknown function compare
PP_0608 +0.6 1.7 putative type 4 fimbrial biogenesis protein compare
PP_5534 +0.6 2.2 protein of unknown function compare
PP_4631 +0.6 1.4 conserved protein of unknown function compare
PP_4262 +0.6 0.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5351 +0.6 2.9 glucose-6-phosphate 1-dehydrogenase compare
PP_5707 +0.6 1.2 conserved protein of unknown function compare
PP_0190 +0.6 1.1 putative disulfide bond formation protein B compare
PP_3549 +0.6 2.0 multidrug efflux transport system - membrane fusion protein compare
PP_0802 +0.6 1.6 putative chemotaxis protein compare
PP_5648 +0.6 1.6 conserved exported protein of unknown function compare
PP_5710 +0.6 2.1 exported protein of unknown function compare
PP_1894 +0.6 1.6 glutathione S-transferase reducing arsenate to arsenite compare
PP_0286 +0.6 2.1 adenine glycosylase compare
PP_3543 +0.6 1.7 Iron-sulfur cluster-binding protein compare
PP_4817 +0.6 1.7 MaoC domain protein compare
PP_5131 +0.6 2.0 sodium-cystine symporter compare
PP_2948 +0.6 2.6 Transcriptional regulator, GntR family compare
PP_3861 +0.6 1.2 Phage FluMu protein gp46 compare
PP_2248 +0.6 2.3 putative transporter compare
PP_5244 +0.6 1.3 Transcriptional regulator, AraC family compare
PP_3637 +0.6 0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5184 +0.6 2.2 glutamylpolyamine synthetase compare
PP_2490 +0.6 1.6 Flavoprotein compare
PP_5715 +0.6 2.3 protein of unknown function compare
PP_1892 +0.6 0.9 conserved protein of unknown function compare
PP_4254 +0.6 0.5 conserved protein of unknown function compare
PP_3005 +0.6 1.0 conserved protein of unknown function compare
PP_1135 +0.5 1.6 conserved exported protein of unknown function compare
PP_5735 +0.5 1.0 conserved hypothetical protein compare
PP_4974 +0.5 2.1 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_3721 +0.5 2.5 arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data) compare
PP_2916 +0.5 1.9 riboflavin synthase compare
PP_0407 +0.5 1.2 DnaJ-like protein DjlA compare
PP_1678 +0.5 1.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4418 +0.5 1.3 conserved protein of unknown function compare
PP_1289 +0.5 1.9 conserved protein of unknown function, DUF328 family compare
PP_4173 +0.5 2.4 Sensor histidine kinase/response regulator compare
PP_2740 +0.5 1.1 Transcriptional regulator, MerR family compare
PP_1519 +0.5 1.9 putative Lipoprotein compare
PP_3289 +0.5 1.4 Acetyltransferase, GNAT family compare
PP_3866 +0.5 1.8 conserved protein of unknown function compare
PP_5455 +0.5 1.7 conserved exported protein of unknown function compare
PP_5504 +0.5 1.3 conserved protein of unknown function compare
PP_2840 +0.5 1.2 putative Membrane protein compare
PP_1833 +0.5 1.6 conserved protein of unknown function compare
PP_2260 +0.5 1.6 putative glycerol-phosphate ABC transporter, ATP-binding protein compare
PP_0702 +0.5 2.1 Major facilitator family transporter compare
PP_3927 +0.5 1.6 Methyltransferase type 12 compare
PP_0301 +0.5 1.9 betainyl-CoA thiolase compare
PP_3346 +0.5 1.1 Nickel transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs across organisms