Experiment set25IT007 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -9.7 -13.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_0760 -7.6 -4.1 conserved membrane protein of unknown function compare
PP_3484 -7.1 -4.9 Response regulator receiver protein compare
PP_1779 -6.8 -4.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1778 -6.5 -6.4 Lipopolysaccharide ABC export system, permease protein compare
PP_4994 -6.1 -4.2 conserved protein of unknown function compare
PP_3649 -6.1 -4.2 Transcriptional regulator, GntR family compare
PP_1198 -6.1 -3.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0164 -5.9 -4.1 conserved protein of unknown function compare
PP_1898 -5.8 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1215 -5.6 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0395 -5.5 -16.0 putative type IV piliation protein compare
PP_4058 -5.4 -8.2 1,4-alpha-glucan branching enzyme compare
PP_5502 -5.3 -3.7 ribosome modulation factor compare
PP_5289 -5.1 -3.5 Acetylglutamate kinase compare
PP_0951 -5.1 -7.0 Ribosome hibernation promoting factor compare
PP_4355 -5.0 -1.7 flagellar export apparatus subunit compare
PP_0396 -5.0 -12.3 conserved protein of unknown function compare
PP_0547 -4.9 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4143 -4.9 -4.5 conserved protein of unknown function compare
PP_4902 -4.9 -3.3 Oligoribonuclease compare
PP_3924 -4.7 -3.2 conserved protein of unknown function compare
PP_0397 -4.7 -15.4 protein kinase compare
PP_5185 -4.3 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4342 -4.3 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_1763 -4.1 -4.3 putative oxidoreductase compare
PP_1217 -4.0 -6.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2152 -4.0 -2.6 glycerophosphoryl diester phosphodiesterase compare
PP_0406 -4.0 -2.7 Nucleotidyltransferase family protein compare
PP_4332 -3.7 -3.8 Chemotaxis protein CheW compare
PP_0184 -3.7 -5.0 Argininosuccinate lyase compare
PP_1734 -3.7 -3.6 Probable septum site-determining protein MinC compare
PP_4936 -3.6 -6.7 O-antigen polymerase compare
PP_4004 -3.6 -4.7 DNA translocase FtsK compare
PP_4353 -3.6 -5.5 Flagellar biosynthetic protein fliR compare
PP_2402 -3.5 -2.2 putative Sensor histidine kinase compare
PP_1088 -3.5 -10.3 Argininosuccinate synthase compare
PP_4380 -3.5 -11.4 Flagellar hook-associated protein FlgL compare
PP_2217 -3.4 -2.9 enoyl-CoA hydratase compare
PP_3821 -3.4 -8.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4471 -3.4 -6.0 Magnesium transporter compare
PP_0292 -3.3 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4938 -3.3 -8.1 putative Glycosyl transferase compare
PP_1428 -3.3 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_4943 -3.3 -2.3 putative Glycosyl transferase compare
PP_2327 -3.3 -5.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0435 -3.3 -9.7 Peptidase, M23/M37 family compare
PP_4396 -3.2 -4.2 conserved protein of unknown function compare
PP_0846 -3.2 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_1319 -3.1 -6.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1733 -3.1 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1224 -3.1 -6.8 periplasmic subunit of the TolQRA transport system compare
PP_4375 -3.1 -8.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_2862 -3.1 -5.1 Undecaprenyl-diphosphatase compare
PP_5014 -3.1 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4942 -3.0 -3.6 conserved protein of unknown function compare
PP_4937 -3.0 -4.3 toluene tolerance protein compare
PP_3409 -3.0 -2.8 putative Cobalamin biosynthesis protein cobE compare
PP_4532 -3.0 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2903 -3.0 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5015 -2.9 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1317 -2.9 -4.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_3105 -2.9 -1.8 conserved membrane protein of unknown function compare
PP_0291 -2.8 -3.7 conserved protein of unknown function compare
PP_5327 -2.8 -2.0 putative phosphate ABC transporter, permease subunit compare
PP_4238 -2.8 -2.7 conserved protein of unknown function compare
PP_1528 -2.8 -1.2 conserved protein of unknown function compare
PP_4880 -2.8 -9.9 exoribonuclease R compare
PP_5661 -2.7 -3.2 putative lipoprotein compare
PP_4385 -2.7 -3.3 flagellar basal-body rod protein FlgG compare
PP_4892 -2.7 -6.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1994 -2.7 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_2309 -2.7 -1.1 conserved protein of unknown function compare
PP_4131 -2.7 -2.6 NADH-quinone oxidoreductase subunit N compare
PP_2121 -2.7 -2.0 putative Lipoprotein compare
PP_5114 -2.7 -1.7 putative adenine methyltransferase compare
PP_4368 -2.6 -4.9 flagellar motor switch protein compare
PP_2433 -2.6 -2.3 conserved protein of unknown function compare
PP_1355 -2.6 -6.6 Muropeptide permease AmpG compare
PP_2414 -2.6 -2.0 conserved exported protein of unknown function compare
PP_0218 -2.6 -7.1 Sensory box protein compare
PP_4365 -2.6 -4.8 Flagellar protein FliJ compare
PP_4337 -2.6 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0872 -2.5 -6.6 Peptide chain release factor 3 compare
PP_5230 -2.5 -3.7 Tyrosine recombinase XerC compare
PP_4354 -2.5 -3.2 flagellar export apparatus subunit compare
PP_1176 -2.5 -1.4 conserved protein of unknown function compare
PP_4340 -2.5 -3.0 response regulator for chemotactic signal transduction compare
PP_0966 -2.5 -6.7 Histidinol dehydrogenase compare
PP_0293 -2.5 -1.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4966 -2.5 -2.2 transcriptional regulator of methionine metabolism compare
PP_4891 -2.4 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1328 -2.4 -1.5 Protein MraZ compare
PP_4356 -2.4 -2.5 Flagellar protein FliO compare
PP_5328 -2.4 -2.3 putative phosphate transport system permease protein compare
PP_4679 -2.4 -4.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0630 -2.3 -1.1 DNA gyrase inhibitor YacG compare
PP_5674 -2.3 -2.3 conserved protein of unknown function compare
PP_2107 -2.3 -1.2 conserved protein of unknown function compare
PP_4253 -2.3 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_5232 -2.3 -2.2 conserved protein of unknown function compare
PP_4366 -2.3 -8.2 flagellum-specific ATP synthase compare
PP_0965 -2.3 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2144 -2.3 -3.6 Transcriptional regulator, TetR family compare
PP_0290 -2.3 -4.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5090 -2.3 -2.1 putative cell division protein compare
PP_5309 -2.3 -6.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4008 -2.2 -5.5 ATP-dependent serine protease compare
PP_4388 -2.2 -8.1 Flagellar hook protein FlgE compare
PP_5310 -2.2 -6.3 junction-specific ATP-dependent DNA helicase compare
PP_5145 -2.2 -10.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4394 -2.2 -3.4 flagella basal body P-ring formation protein compare
PP_4378 -2.2 -7.8 flagellin, filament structural protein compare
PP_4120 -2.1 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_1318 -2.1 -5.2 Cytochrome b compare
PP_4381 -2.1 -6.9 Flagellar hook-associated protein FlgK compare
PP_4391 -2.1 -4.2 flagellar basal-body rod protein FlgB compare
PP_5393 -2.1 -1.3 putative metal-binding chaperone compare
PP_1079 -2.1 -4.2 Ornithine carbamoyltransferase compare
PP_1860 -2.1 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_4376 -2.0 -6.1 flagellar filament capping protein compare
PP_4383 -2.0 -3.2 Flagellar P-ring protein compare
PP_4940 -2.0 -5.7 Putative glycosyltransferase compare
PP_4361 -2.0 -3.5 Flagellar hook-length control protein FliK compare
PP_4993 -2.0 -4.2 Glutathione synthetase compare
PP_4814 -2.0 -2.7 ATP-dependent protease La domain protein compare
PP_0949 -2.0 -4.0 putative ATP-binding protein UPF0042 compare
PP_1216 -2.0 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4678 -1.9 -7.9 Ketol-acid reductoisomerase compare
PP_4680 -1.9 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3434 -1.9 -2.4 conserved protein of unknown function compare
PP_1362 -1.9 -3.3 pyruvate kinase II compare
PP_1036 -1.9 -5.1 membrane-bound lytic murein transglycosylase F compare
PP_5216 -1.9 -1.6 exopolyphosphatase compare
PP_1716 -1.9 -1.5 Transcriptional regulator, Cro/CI family compare
PP_1988 -1.9 -4.7 3-isopropylmalate dehydrogenase compare
PP_4390 -1.9 -5.1 flagellar basal-body rod protein FlgC compare
PP_3487 -1.9 -1.3 conserved exported protein of unknown function compare
PP_4988 -1.9 -6.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4941 -1.9 -4.4 conserved exported protein of unknown function compare
PP_4803 -1.9 -6.3 D-alanyl-D-alanine carboxypeptidase compare
PP_1232 -1.9 -4.4 conserved exported protein of unknown function compare
PP_4344 -1.9 -4.7 flagellar export pore protein compare
PP_4944 -1.9 -2.7 Carbamoyltransferase compare
PP_1142 -1.8 -1.0 conserved protein of unknown function compare
PP_4126 -1.8 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4124 -1.8 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_0801 -1.8 -1.1 conserved exported protein of unknown function compare
PP_5028 -1.8 -3.2 proline iminopeptidase compare
PP_5128 -1.8 -5.2 Dihydroxy-acid dehydratase compare
PP_4824 -1.8 -5.2 Sensor histidine kinase/response regulator compare
PP_4045 -1.8 -1.3 conserved protein of unknown function compare
PP_4546 -1.8 -3.6 ATP-dependent helicase HrpA compare
PP_t10 -1.8 -1.4 tRNA-Pro compare
PP_0504 -1.8 -4.2 Outer membrane protein OprG compare
PP_4528 -1.8 -1.7 conserved protein of unknown function compare
PP_3726 -1.8 -1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_4384 -1.8 -5.0 Flagellar L-ring protein compare
PP_4722 -1.8 -2.4 Transcription elongation factor GreA compare
PP_2153 -1.7 -1.5 conserved protein of unknown function compare
PP_2215 -1.7 -2.5 acetyl-CoA acetyltransferase compare
PP_2322 -1.7 -3.8 Major outer membrane lipoprotein compare
PP_4121 -1.7 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PP_1986 -1.7 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_4804 -1.7 -1.2 RlpA-like lipoprotein compare
PP_4895 -1.7 -1.2 tRNA dimethylallyltransferase compare
PP_1074 -1.7 -3.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4367 -1.7 -2.1 Flagellar assembly protein FliH compare
PP_5095 -1.7 -0.8 pyrroline-5-carboxylate reductase compare
PP_0185 -1.7 -5.2 Positive alginate biosynthesis regulatory protein compare
PP_2214 -1.6 -2.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4700 -1.6 -1.1 pantothenate synthetase compare
PP_2306 -1.6 -1.6 conserved exported protein of unknown function compare
PP_1128 -1.6 -3.3 OmpA family protein compare
PP_0753 -1.6 -4.2 putative Lipoprotein compare
PP_4066 -1.6 -2.0 methylglutaconyl-CoA hydratase compare
PP_0979 -1.6 -3.1 DNA polymerase III subunit chi compare
PP_1025 -1.6 -7.0 2-isopropylmalate synthase compare
PP_4684 -1.6 -4.0 conserved protein of unknown function with kinase-like domain compare
PP_4352 -1.6 -5.0 flagellin export apparatus, substrate specificity protein compare
PP_4333 -1.6 -2.8 CheW domain protein compare
PP_4581 -1.6 -1.6 putative amidotransferase compare
PP_0274 -1.6 -1.3 putative transcriptional regulator containing HTH domain compare
PP_2378 -1.6 -2.0 Fe/S biogenesis protein NfuA compare
PP_0368 -1.6 -7.7 putative Acyl-CoA dehydrogenase compare
PP_3580 -1.6 -1.7 conserved protein of unknown function compare
PP_5084 -1.6 -5.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1783 -1.5 -1.1 dTDP-glucose pyrophosphorylase compare
PP_0957 -1.5 -1.3 D-arabinose 5-phosphate isomerase compare
PP_3511 -1.5 -4.0 Branched-chain-amino-acid aminotransferase compare
PP_4129 -1.5 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5329 -1.5 -1.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0125 -1.5 -2.2 putative cytochrome c-type protein compare
PP_1468 -1.5 -1.4 Tyrosine recombinase XerD compare
PP_1892 -1.5 -2.1 conserved protein of unknown function compare
PP_2650 -1.5 -1.1 putative 4-hydroxybutyrate dehydrogenase compare
PP_1757 -1.5 -2.6 DNA-binding transcriptional dual regulator compare
PP_4369 -1.5 -2.5 Flagellar M-ring protein compare
PP_0832 -1.5 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1764 -1.5 -1.6 Phosphoglycolate phosphatase 2 compare


Specific Phenotypes

For 2 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs across organisms