Experiment set24S541 for Agrobacterium fabrum C58

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LB with Streptomycin sulfate salt 200 ug/mL

Group: stress
Media: LB + Streptomycin sulfate salt (200 ug/mL)
Culturing: Agro_ML11b, 24_well_plate, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 4/26/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 39 genes in this experiment

For stress Streptomycin sulfate salt in Agrobacterium fabrum C58

For stress Streptomycin sulfate salt across organisms

SEED Subsystems

Subsystem #Specific
Bacterial RNA-metabolizing Zn-dependent hydrolases 3
Heat shock dnaK gene cluster extended 3
Hfl operon 3
Ribosome biogenesis bacterial 3
Conserved gene cluster associated with Met-tRNA formyltransferase 2
Proteasome bacterial 2
Proteolysis in bacteria, ATP-dependent 2
Glutathione-regulated potassium-efflux system and associated functions 1
Multidrug Resistance Efflux Pumps 1
Phosphate metabolism 1
Potassium homeostasis 1
Protein degradation 1
RNA processing and degradation, bacterial 1
Sex pheromones in Enterococcus faecalis and other Firmicutes 1
Terminal cytochrome d ubiquinol oxidases 1
Terminal cytochrome oxidases 1
Universal GTPases 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pseudouridine degradation 2 1 1
Ac/N-end rule pathway 21 6 6
tRNA processing 10 10 2
Arg/N-end rule pathway (eukaryotic) 14 8 1