Experiment set24S541 for Agrobacterium fabrum C58
LB with Streptomycin sulfate salt 200 ug/mL
Group: stressMedia: LB + Streptomycin sulfate salt (200 ug/mL)
Culturing: Agro_ML11b, 24_well_plate, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 4/26/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 39 genes in this experiment
For stress Streptomycin sulfate salt in Agrobacterium fabrum C58
For stress Streptomycin sulfate salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Carotenoid biosynthesis - General
- Alkaloid biosynthesis I
- Lysine degradation
- Histidine metabolism
- Tyrosine metabolism
- Porphyrin and chlorophyll metabolism
- Anthocyanin biosynthesis
- Insect hormone biosynthesis
- Fatty acid biosynthesis
- Ubiquinone and menaquinone biosynthesis
- Puromycin biosynthesis
- Pyrimidine metabolism
- Phenylalanine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Nucleotide sugars metabolism
- Lipopolysaccharide biosynthesis
- Peptidoglycan biosynthesis
- Glycerophospholipid metabolism
- Ether lipid metabolism
- alpha-Linolenic acid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- 1- and 2-Methylnaphthalene degradation
- Naphthalene and anthracene degradation
- Benzoate degradation via CoA ligation
- Trinitrotoluene degradation
- Ethylbenzene degradation
- Butanoate metabolism
- Biotin metabolism
- Limonene and pinene degradation
- Diterpenoid biosynthesis
- Sulfur metabolism
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Alkaloid biosynthesis II
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
Pathway | #Steps | #Present | #Specific |
---|---|---|---|
pseudouridine degradation | 2 | 1 | 1 |
Ac/N-end rule pathway | 21 | 6 | 6 |
tRNA processing | 10 | 10 | 2 |
Arg/N-end rule pathway (eukaryotic) | 14 | 8 | 1 |