Experiment set24S537 for Agrobacterium fabrum C58

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LB with Timentin 6.25 ug/mL

Group: stress
Media: LB + Timentin (6.25 ug/mL)
Culturing: Agro_ML11b, 24_well_plate, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 4/26/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 30 genes in this experiment

For stress Timentin in Agrobacterium fabrum C58

For stress Timentin across organisms

SEED Subsystems

Subsystem #Specific
Choline and Betaine Uptake and Betaine Biosynthesis 3
Multidrug Resistance Efflux Pumps 3
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 2
Bacterial Cell Division 1
Bacterial Cytoskeleton 1
Bacterial RNA-metabolizing Zn-dependent hydrolases 1
Beta-lactamase 1
Peptidoglycan Biosynthesis 1
Sex pheromones in Enterococcus faecalis and other Firmicutes 1
cAMP signaling in bacteria 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
mannosylfructose biosynthesis 2 2 1
chitin degradation II (Vibrio) 6 2 2
Salmonella enterica serotype O:3,10 O antigen biosynthesis 5 1 1
Salmonella enterica serotype O:9,46 O antigen biosynthesis 6 1 1
Salmonella enterica serotype O:4 O antigen biosynthesis (group B1) 6 1 1
Salmonella enterica serotype O:2 O antigen biosynthesis 6 1 1
Porphyromonas gingivalis O-LPS antigen biosynthesis 6 1 1
Salmonella enterica serotype O:9 O antigen biosynthesis 6 1 1
succinoglycan biosynthesis 14 10 2
chitin degradation III (Serratia) 7 2 1
Salmonella enterica serotype O:8 O antigen biosynthesis 8 2 1
Salmonella enterica serotype O:9,46,27 O antigen biosynthesis 9 1 1
peptidoglycan recycling II 10 2 1
peptidoglycan recycling I 14 8 1