Experiment set24S536 for Agrobacterium fabrum C58

LB with Timentin 6.25 ug/mL

Group: stress
Media: LB + Timentin (6.25 ug/mL)
Culturing: Agro_ML11b, 24_well_plate, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 4/26/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 26 genes in this experiment

For stress Timentin in Agrobacterium fabrum C58

For stress Timentin across organisms

SEED Subsystems

Subsystem	#Specific
Choline and Betaine Uptake and Betaine Biosynthesis	3
Bacterial Cell Division	1
Bacterial Cytoskeleton	1
Bacterial RNA-metabolizing Zn-dependent hydrolases	1
Beta-lactamase	1
Multidrug Resistance Efflux Pumps	1
Peptidoglycan Biosynthesis	1
Sex pheromones in Enterococcus faecalis and other Firmicutes	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Other glycan degradation
• Aminosugars metabolism
• Lipopolysaccharide biosynthesis
• Glycosphingolipid biosynthesis - globo series
• Glycosphingolipid biosynthesis - ganglio series

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
chitin degradation II (Vibrio)	6	2	2
chitin degradation III (Serratia)	7	2	1
peptidoglycan recycling II	10	2	1
succinoglycan biosynthesis	14	10	1
peptidoglycan recycling I	14	8	1