Experiment set24S490 for Agrobacterium fabrum C58

Bethi_Library_OD0.01

Group: in planta
Media: Bethi Leaf_4weekoldplant + Bethi_Library_OD0.01
Culturing: Agro_ML11b, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 4/26/2025

Specific Phenotypes

For 4 genes in this experiment

For in planta Bethi_Library_OD0.01 in Agrobacterium fabrum C58

For in planta Bethi_Library_OD0.01 across organisms

SEED Subsystems

Subsystem	#Specific
Glycerol and Glycerol-3-phosphate Uptake and Utilization	1
Nudix proteins (nucleoside triphosphate hydrolases)	1
Orphan regulatory proteins	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ascorbate and aldarate metabolism
• Biosynthesis of steroids
• Ubiquinone and menaquinone biosynthesis
• Purine metabolism
• gamma-Hexachlorocyclohexane degradation
• Tryptophan metabolism
• Benzoxazinone biosynthesis
• Lipopolysaccharide biosynthesis
• Glycerophospholipid metabolism
• Sphingolipid metabolism
• Naphthalene and anthracene degradation
• 1,4-Dichlorobenzene degradation
• Folate biosynthesis
• Limonene and pinene degradation
• Diterpenoid biosynthesis
• Brassinosteroid biosynthesis
• Carotenoid biosynthesis - General
• Phenylpropanoid biosynthesis
• Biosynthesis of phenylpropanoids
• Biosynthesis of terpenoids and steroids
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
glycerophosphodiester degradation	2	2	1
phosphatidylcholine resynthesis via glycerophosphocholine	2	1	1
glycerol and glycerophosphodiester degradation	4	3	1
phospholipid remodeling (phosphatidylethanolamine, yeast)	4	2	1
anandamide biosynthesis I	12	3	1