Experiment set24IT084 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +4.0 10.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.8 7.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +2.7 24.5 Sensor protein GacS compare
PP_4099 +2.7 20.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3312 +1.6 2.4 putative Heat shock protein compare
PP_0593 +1.5 1.9 putative ribosome-binding factor compare
PP_4268 +1.5 1.8 nucleoid-associated broad specificity regulator compare
PP_4797 +1.4 1.3 conserved protein of unknown function compare
PP_1041 +1.3 3.1 twin arginine protein export complex subunit compare
PP_1208 +1.3 2.5 conserved protein of unknown function, SlyX family compare
PP_2387 +1.3 2.4 conserved protein of unknown function compare
PP_3098 +1.3 1.8 conserved protein of unknown function compare
PP_5571 +1.2 1.9 conserved protein of unknown function compare
PP_2581 +1.2 2.2 conserved protein of unknown function compare
PP_5674 +1.2 3.7 conserved protein of unknown function compare
PP_3971 +1.1 2.1 conserved protein of unknown function compare
PP_3726 +1.1 1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_4503 +1.1 2.2 DNA-binding response regulator compare
PP_0794 +1.1 2.8 1-phosphofructokinase monomer compare
PP_5027 +1.0 1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2388 +1.0 2.8 Transporter, LysE family compare
PP_2615 +1.0 2.2 hemolysin-coregulated protein compare
PP_3840 +1.0 1.6 conserved protein of unknown function compare
PP_2826 +1.0 3.3 Transcriptional regulator MexT compare
PP_1054 +1.0 2.2 Type II secretion pathway protein XcpZ compare
PP_0152 +1.0 1.4 conserved exported protein of unknown function compare
PP_4317 +1.0 1.9 conserved protein of unknown function compare
PP_1501 +1.0 3.0 conserved protein of unknown function compare
PP_4171 +0.9 7.8 conserved exported protein of unknown function compare
PP_3392 +0.9 1.7 conserved protein of unknown function compare
PP_3637 +0.9 1.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0999 +0.9 2.9 carbamate kinase compare
PP_0425 +0.9 2.6 conserved protein of unknown function compare
PP_2337 +0.9 1.7 aconitate isomerase compare
PP_5201 +0.9 1.5 conserved protein of unknown function, UPF0149 family compare
PP_0165 +0.9 7.2 GGDEF domain protein compare
PP_4561 +0.9 1.0 stress response protein compare
PP_0167 +0.9 7.1 Toxin secretion ATP-binding protein compare
PP_1548 +0.9 2.6 conserved protein of unknown function compare
PP_4531 +0.9 3.2 conserved exported protein of unknown function compare
PP_4217 +0.9 7.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0293 +0.9 1.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0166 +0.8 6.0 HlyD family secretion protein compare
PP_0856 +0.8 1.1 conserved lipoprotein of unknown function compare
PP_2568 +0.8 1.4 Ring-cleaving dioxygenase compare
PP_4999 +0.8 0.4 dihydroorotase-like protein compare
PP_2848 +0.8 1.6 urease accessory protein compare
PP_4254 +0.8 1.7 conserved protein of unknown function compare
PP_2121 +0.8 1.3 putative Lipoprotein compare
PP_3447 +0.8 1.4 conserved membrane protein of unknown function compare
PP_4835 +0.8 1.8 conserved exported protein of unknown function compare
PP_2640 +0.8 2.0 Acetyltransferase, GNAT family compare
PP_4519 +0.8 5.6 Agglutination protein compare
PP_2750 +0.8 2.8 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5619 +0.8 1.8 protein of unknown function compare
PP_4710 +0.8 4.2 tRNA pseudouridine 55 synthase compare
PP_5603 +0.8 3.1 putative FAD dependent oxidoreductase compare
PP_5681 +0.8 2.9 conserved protein of unknown function compare
PP_2793 +0.8 1.2 Acyl-CoA dehydrogenase family protein compare
PP_5628 +0.8 1.9 conserved protein of unknown function compare
PP_0550 +0.8 2.2 conserved protein of unknown function compare
PP_0507 +0.8 2.7 putative ABC efflux transporter, ATP-binding protein compare
PP_4246 +0.8 5.0 Periplasmic binding protein compare
PP_2403 +0.8 0.9 Chemotaxis protein CheY compare
PP_4799 +0.8 0.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3407 +0.8 1.4 conserved protein of unknown function compare
PP_3509 +0.8 4.0 Glyoxalase family protein compare
PP_1076 +0.7 1.7 aquaglyceroporin compare
PP_0168 +0.7 6.6 putative surface adhesion protein compare
PP_1699 +0.7 2.0 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_2309 +0.7 1.1 conserved protein of unknown function compare
PP_1562 +0.7 1.3 putative Phage terminase, small subunit compare
PP_0916 +0.7 2.4 Amino acid transporter LysE compare
PP_2747 +0.7 1.7 conserved protein of unknown function compare
PP_2083 +0.7 2.2 putative Lipase compare
PP_2186 +0.7 1.7 putative Formate dehydrogenase, delta subunit compare
PP_2828 +0.7 2.5 conserved protein of unknown function compare
PP_0848 +0.7 1.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3398 +0.7 2.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5247 +0.7 2.5 conserved protein of unknown function compare
PP_5429 +0.7 4.0 protein of unknown function compare
PP_1269 +0.7 0.8 Universal stress protein family compare
PP_3512 +0.7 2.3 conserved membrane protein of unknown function compare
PP_1075 +0.7 2.8 glycerol kinase compare
PP_0886 +0.7 1.3 conserved exported protein of unknown function compare
PP_5437 +0.7 2.4 protein of unknown function compare
PP_5549 +0.7 2.9 conserved protein of unknown function compare
PP_0839 +0.7 1.5 tRNA Cm32/Um32 methyltransferase compare
PP_3179 +0.7 3.0 Transcriptional regulator, LysR family compare
PP_0959 +0.7 1.1 phospholipid ABC transporter compare
PP_5030 +0.7 2.8 Imidazolonepropionase compare
PP_4094 +0.7 1.4 conserved protein of unknown function compare
PP_2960 +0.7 2.6 transcriptional regulator, AraC family compare
PP_5586 +0.7 3.4 exported protein of unknown function compare
PP_4196 +0.7 1.2 conserved exported protein of unknown function compare
PP_4314 +0.7 2.5 conserved protein of unknown function compare
PP_1935 +0.7 1.4 Transcriptional regulator, Cro/CI family compare
PP_4631 +0.7 2.1 conserved protein of unknown function compare
PP_1153 +0.7 2.0 putative lipoprotein compare
PP_1110 +0.7 1.3 serine acetyltransferase compare
PP_5575 +0.7 1.0 conserved protein of unknown function compare
PP_2280 +0.7 0.7 conserved protein of unknown function compare
PP_4656 +0.6 3.5 protocatechuate 3,4-dioxygenase beta chain compare
PP_1554 +0.6 1.7 conserved protein of unknown function compare
PP_0497 +0.6 2.2 Transcriptional regulator, Cro/CI family compare
PP_5572 +0.6 1.0 protein of unknown function compare
PP_0301 +0.6 2.5 betainyl-CoA thiolase compare
PP_4792 +0.6 1.3 conserved exported protein of unknown function compare
PP_5331 +0.6 1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_1005 +0.6 1.7 Heme oxygenase compare
PP_2290 +0.6 1.5 conserved protein of unknown function compare
PP_3715 +0.6 1.6 Muconate cycloisomerase 1 compare
PP_5066 +0.6 2.7 K(+)/H(+) antiporter NhaP2 compare
PP_3136 +0.6 3.0 putative O-acetyltransferase compare
PP_3034 +0.6 2.0 putative Regulator protein compare
PP_5224 +0.6 1.4 conserved protein of unknown function compare
PP_2227 +0.6 2.1 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_3284 +0.6 2.6 enoyl-CoA hydratase-isomerase compare
PP_0979 +0.6 1.4 DNA polymerase III subunit chi compare
PP_2291 +0.6 1.7 conserved protein of unknown function compare
PP_5070 +0.6 2.7 ParA family protein compare
PP_1552 +0.6 2.0 putative Phage replication protein compare
PP_2235 +0.6 2.1 conserved protein of unknown function compare
PP_1070 +0.6 2.6 glutamate / aspartate ABC transporter - permease subunit compare
PP_2231 +0.6 1.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2142 +0.6 1.3 Cell division inhibitor SulA compare
PP_0630 +0.6 1.0 DNA gyrase inhibitor YacG compare
PP_1576 +0.6 1.8 putative Immunity protein compare
PP_5675 +0.6 1.2 conserved protein of unknown function compare
PP_0998 +0.6 2.3 conserved protein of unknown function compare
PP_1609 +0.6 0.6 conserved protein of unknown function compare
PP_2507 +0.6 2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2503 +0.6 1.8 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_4227 +0.6 0.8 conserved protein of unknown function compare
PP_1679 +0.6 1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5225 +0.6 1.0 frataxin compare
PP_2716 +0.6 1.1 arsenate reductase compare
PP_1190 +0.6 1.2 conserved protein of unknown function compare
PP_3915 +0.6 2.3 conserved protein of unknown function compare
PP_3266 +0.6 3.0 conserved protein of unknown function compare
PP_3127 +0.6 2.5 putative Exopolysaccharide transport protein compare
PP_4461 +0.6 3.0 Major facilitator family transporter compare
PP_5743 +0.6 3.1 putative TonB-dependent receptor protein compare
PP_5125 +0.6 2.7 Formamidopyrimidine-DNA glycosylase compare
PP_4706 +0.6 2.0 conserved protein of unknown function compare
PP_4558 +0.6 2.2 Acetyltransferase, GNAT family compare
PP_3824 +0.6 1.3 conserved exported protein of unknown function compare
PP_0787 +0.6 1.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3141 +0.6 2.4 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_5659 +0.6 1.9 protein of unknown function compare
PP_2106 +0.6 2.2 putative Ammonium transporter compare
PP_5473 +0.6 1.3 putative transcriptional regulator, LuxR family compare
PP_3142 +0.6 2.3 putative Sugar transferase compare
PP_1568 +0.6 0.8 conserved protein of unknown function compare
PP_2107 +0.6 0.6 conserved protein of unknown function compare
PP_3055 +0.6 2.8 Pyocin R2_PP, tail formation protein compare
PP_2701 +0.6 2.3 Transcriptional regulator, LysR family compare
PP_1038 +0.6 1.2 conserved protein of unknown function compare
PP_3126 +0.6 3.2 putative polysaccharide exported protein compare
PP_2533 +0.6 1.2 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1828 +0.6 1.3 conserved protein of unknown function compare
PP_2784 +0.6 1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5541 +0.6 1.9 conserved protein of unknown function compare
PP_5685 +0.6 2.6 protein of unknown function compare
PP_1116 +0.5 2.0 Site-specific recombinase, resolvase family compare
PP_5481 +0.5 2.6 conserved protein of unknown function compare
PP_t57 +0.5 1.3 tRNA-Arg compare
PP_1756 +0.5 2.3 conserved exported protein of unknown function compare
PP_2823 +0.5 2.0 Methyl-accepting chemotaxis transducer compare
PP_5604 +0.5 1.3 putative subtilisin-like serine protease compare
PP_3138 +0.5 2.5 VirK domain protein compare
PP_2060 +0.5 1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1113 +0.5 3.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3480 +0.5 0.8 conserved protein of unknown function compare
PP_2559 +0.5 1.6 Metalloprotease secretion protein compare
PP_0335 +0.5 1.7 Glutathione S-transferase family protein compare
PP_5393 +0.5 0.4 putative metal-binding chaperone compare
PP_3140 +0.5 2.1 Glycosyl transferase, group 2 family protein compare
PP_3041 +0.5 2.0 conserved protein of unknown function compare
PP_1982 +0.5 1.7 small heat shock protein IbpA compare
PP_5112 +0.5 2.9 putative processin peptidase compare
PP_3705 +0.5 1.7 conserved membrane protein of unknown function compare
PP_3765 +0.5 1.7 H-NS family protein MvaT compare
PP_3898 +0.5 1.0 conserved protein of unknown function compare
PP_3036 +0.5 1.2 conserved protein of unknown function compare
PP_4847 +0.5 1.4 chaperone modulatory of CbpA co-chaperone protein compare
PP_4310 +0.5 2.4 putative Hydantoin racemase compare
PP_3170 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_5456 +0.5 0.7 conserved protein of unknown function compare
PP_2416 +0.5 1.1 putative Iron ABC transporter, ATP-binding protein compare
PP_0919 +0.5 1.4 conserved protein of unknown function compare
PP_1056 +0.5 2.4 putative Iron-chelator utilization protein compare
PP_0672 +0.5 3.7 Sensory box protein compare
PP_0182 +0.5 1.5 conserved protein of unknown function compare
PP_5610 +0.5 1.2 protein of unknown function compare
PP_4968 +0.5 2.1 DNA ligase B compare
PP_0627 +0.5 1.3 conserved protein of unknown function compare
PP_4660 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_2868 +0.5 1.7 Transcriptional regulator, Cro/CI family compare
PP_3152 +0.5 2.4 putative DNA-binding transcriptional regulator, LysR-type compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms