Experiment set24IT083 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +3.9 10.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +3.5 6.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1650 +3.2 29.7 Sensor protein GacS compare
PP_4099 +3.1 22.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1099 +1.4 3.8 Cold shock protein CapB compare
PP_3098 +1.3 2.2 conserved protein of unknown function compare
PP_2575 +1.3 4.0 conserved exported protein of unknown function compare
PP_1824 +1.2 1.2 Smr domain protein compare
PP_4098 +1.1 2.1 UvrABC system protein C compare
PP_2309 +1.1 1.9 conserved protein of unknown function compare
PP_2060 +1.1 1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5473 +1.1 1.6 putative transcriptional regulator, LuxR family compare
PP_3034 +1.1 3.9 putative Regulator protein compare
PP_5008 +1.0 2.3 Poly granule-associated protein compare
PP_3892 +1.0 1.6 conserved protein of unknown function compare
PP_2070 +1.0 2.2 Transcriptional regulator, AraC family compare
PP_1054 +0.9 2.1 Type II secretion pathway protein XcpZ compare
PP_4981 +0.9 1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_4999 +0.9 0.4 dihydroorotase-like protein compare
PP_4171 +0.9 6.9 conserved exported protein of unknown function compare
PP_5571 +0.9 1.4 conserved protein of unknown function compare
PP_5456 +0.9 1.1 conserved protein of unknown function compare
PP_2269 +0.9 2.6 putative N-acetylmuramoyl-L-alanine amidase compare
PP_4246 +0.8 4.9 Periplasmic binding protein compare
PP_4217 +0.8 7.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5201 +0.8 2.0 conserved protein of unknown function, UPF0149 family compare
PP_1000 +0.8 2.0 ornithine carbamoyltransferase, catabolic compare
PP_4227 +0.8 1.4 conserved protein of unknown function compare
PP_4799 +0.8 0.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1269 +0.8 1.1 Universal stress protein family compare
PP_4254 +0.8 1.2 conserved protein of unknown function compare
PP_0627 +0.8 2.6 conserved protein of unknown function compare
PP_t12 +0.8 1.1 tRNA-Thr compare
PP_2740 +0.8 2.5 Transcriptional regulator, MerR family compare
PP_0856 +0.8 1.0 conserved lipoprotein of unknown function compare
PP_3840 +0.8 1.4 conserved protein of unknown function compare
PP_5705 +0.8 2.1 protein of unknown function compare
PP_0319 +0.8 1.7 conserved protein of unknown function compare
PP_5095 +0.8 0.7 pyrroline-5-carboxylate reductase compare
PP_1310 +0.8 2.1 conserved hypothetical protein compare
PP_4952 +0.7 1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1208 +0.7 1.2 conserved protein of unknown function, SlyX family compare
PP_1353 +0.7 1.2 conserved membrane protein of unknown function compare
PP_0787 +0.7 2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3824 +0.7 1.4 conserved exported protein of unknown function compare
PP_2894 +0.7 2.0 conserved protein of unknown function compare
PP_t49 +0.7 2.6 tRNA-Met compare
PP_4424 +0.7 1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2750 +0.7 2.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0649 +0.7 4.0 MutT/nudix family protein compare
PP_0998 +0.7 3.1 conserved protein of unknown function compare
PP_1381 +0.7 1.0 4-carboxymuconolactone decarboxylase compare
PP_4561 +0.7 0.8 stress response protein compare
PP_2756 +0.7 1.1 conserved protein of unknown function compare
PP_1508 +0.7 2.6 conserved protein of unknown function compare
PP_3419 +0.7 2.8 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_4531 +0.7 1.9 conserved exported protein of unknown function compare
PP_t29 +0.7 0.7 tRNA-Ala compare
PP_1113 +0.7 4.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5224 +0.7 2.1 conserved protein of unknown function compare
PP_0166 +0.6 5.0 HlyD family secretion protein compare
PP_0235 +0.6 1.6 Peroxidase compare
PP_2291 +0.6 1.6 conserved protein of unknown function compare
PP_3866 +0.6 1.8 conserved protein of unknown function compare
PP_1070 +0.6 2.8 glutamate / aspartate ABC transporter - permease subunit compare
PP_4073 +0.6 1.7 conserved exported protein of unknown function compare
PP_3460 +0.6 1.8 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_0676 +0.6 2.8 putative Transcription elongation factor compare
PP_0150 +0.6 1.7 conserved exported protein of unknown function compare
PP_1568 +0.6 0.9 conserved protein of unknown function compare
PP_2941 +0.6 2.5 conserved protein of unknown function compare
PP_0794 +0.6 1.6 1-phosphofructokinase monomer compare
PP_1553 +0.6 1.0 conserved protein of unknown function compare
PP_5598 +0.6 2.1 conserved protein of unknown function compare
PP_4710 +0.6 3.6 tRNA pseudouridine 55 synthase compare
PP_4701 +0.6 0.8 glucose-6-phosphate isomerase compare
PP_1211 +0.6 1.9 conserved protein of unknown function compare
PP_4034 +0.6 2.6 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_0273 +0.6 1.5 conserved protein of unknown function compare
PP_1124 +0.6 1.5 conserved membrane protein of unknown function compare
PP_4317 +0.6 1.9 conserved protein of unknown function compare
PP_3855 +0.6 2.2 conserved protein of unknown function compare
PP_2387 +0.6 2.0 conserved protein of unknown function compare
PP_1045 +0.6 1.0 Type II secretion pathway protein XcpP compare
PP_0210 +0.6 2.3 putative Phycobiliprotein compare
PP_0750 +0.6 2.0 conserved protein of unknown function compare
PP_0168 +0.6 5.2 putative surface adhesion protein compare
PP_4133 +0.6 1.5 Transcriptional regulator-related protein compare
PP_1987 +0.6 1.4 Methlytransferase, UbiE/COQ5 family compare
PP_0087 +0.6 1.2 conserved exported protein of unknown function compare
PP_0841 +0.6 1.4 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0206 +0.6 1.4 Ferredoxin, 4Fe-4S compare
PP_5707 +0.6 2.0 conserved protein of unknown function compare
PP_2388 +0.5 1.5 Transporter, LysE family compare
PP_2848 +0.5 2.1 urease accessory protein compare
PP_4723 +0.5 0.4 Carbamoyl-phosphate synthase large chain compare
PP_0262 +0.5 2.5 conserved protein of unknown function compare
PP_5253 +0.5 1.9 Arylesterase compare
PP_2854 +0.5 3.0 conserved exported protein of unknown function compare
PP_0167 +0.5 4.4 Toxin secretion ATP-binding protein compare
PP_0276 +0.5 0.8 Transcriptional regulator, Cro/CI family compare
PP_1892 +0.5 1.3 conserved protein of unknown function compare
PP_5690 +0.5 2.0 conserved protein of unknown function compare
PP_1548 +0.5 1.0 conserved protein of unknown function compare
PP_2101 +0.5 2.9 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_3228 +0.5 1.8 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_1564 +0.5 2.3 conserved exported protein of unknown function compare
PP_0165 +0.5 4.1 GGDEF domain protein compare
PP_1122 +0.5 1.1 OmpA family protein compare
PP_5358 +0.5 2.4 conserved protein of unknown function compare
PP_1004 +0.5 1.3 conserved protein of unknown function compare
PP_4258 +0.5 1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_3243 +0.5 1.3 Acetyltransferase, GNAT family compare
PP_3825 +0.5 1.9 conserved protein of unknown function compare
PP_5661 +0.5 1.0 putative lipoprotein compare
PP_2748 +0.5 1.2 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2882 +0.5 2.0 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_5682 +0.5 2.5 conserved protein of unknown function compare
PP_2759 +0.5 1.8 ribose ABC transporter - ATP-binding subunit compare
PP_4314 +0.5 1.7 conserved protein of unknown function compare
PP_0425 +0.5 1.1 conserved protein of unknown function compare
PP_1570 +0.5 1.0 Head-tail adaptor compare
PP_1112 +0.5 3.3 conserved membrane protein of unknown function compare
PP_5156 +0.5 1.6 conserved exported protein of unknown function compare
PP_3002 +0.5 2.2 shikimate dehydrogenase-related enzyme compare
PP_5532 +0.5 1.9 conserved protein of unknown function compare
PP_2389 +0.5 2.5 conserved protein of unknown function compare
PP_1404 +0.5 1.4 conserved protein of unknown function compare
PP_4230 +0.5 2.1 conserved exported protein of unknown function compare
PP_2318 +0.5 2.3 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_2530 +0.5 1.1 conserved protein of unknown function compare
PP_3138 +0.5 3.1 VirK domain protein compare
PP_4178 +0.5 2.0 Dienelactone hydrolase family protein compare
PP_1938 +0.5 0.7 conserved protein of unknown function compare
PP_3806 +0.5 1.1 Hydrolase, isochorismatase family compare
PP_1020 +0.5 0.7 putative glucose-6-phosphate 1-epimerase compare
PP_5298 +0.5 1.6 putative glutamine amidotransferase compare
PP_2760 +0.5 2.0 putative ribose transport permease protein compare
PP_3861 +0.5 2.3 Phage FluMu protein gp46 compare
PP_4328 +0.5 1.5 conserved protein of unknown function compare
PP_2497 +0.5 0.9 conserved protein of unknown function compare
PP_1110 +0.5 1.4 serine acetyltransferase compare
PP_5385 +0.5 2.1 metal RND efflux outer membrane protein, CzcC family compare
PP_3140 +0.5 2.4 Glycosyl transferase, group 2 family protein compare
PP_2474 +0.5 1.2 Glutathione S-transferase family protein compare
PP_4180 +0.5 1.6 conserved protein of unknown function compare
PP_4681 +0.5 1.0 conserved protein of unknown function compare
PP_3913 +0.5 1.9 protein of unknown function compare
PP_2222 +0.5 1.6 conserved protein of unknown function compare
PP_2457 +0.5 2.0 DNA-binding transcriptional repressor compare
PP_4373 +0.5 3.3 Transcriptional regulator FleQ compare
PP_2511 +0.5 1.0 conserved protein of unknown function compare
PP_3141 +0.5 2.7 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_4160 +0.5 2.3 K+ transporting ATPase, KdpB subunit compare
PP_2889 +0.5 2.4 putative Transmembrane regulator PrtR compare
PP_4835 +0.5 1.4 conserved exported protein of unknown function compare
PP_1279 +0.5 2.3 Probable alginate O-acetylase AlgJ compare
PP_5152 +0.5 2.7 conserved exported protein of unknown function compare
PP_5157 +0.4 1.3 conserved exported protein of unknown function compare
PP_4313 +0.4 2.4 putative peptidylprolyl isomerase compare
PP_4629 +0.4 1.4 Sensory box protein compare
PP_0782 +0.4 1.5 conserved protein of unknown function compare
PP_3346 +0.4 1.4 Nickel transporter ATP-binding protein compare
PP_0874 +0.4 0.7 conserved protein of unknown function compare
PP_4519 +0.4 3.1 Agglutination protein compare
PP_5437 +0.4 1.6 protein of unknown function compare
PP_4036 +0.4 2.2 D-hydantoinase/dihydropyrimidinase compare
PP_4607 +0.4 2.1 putative Transmembrane sensor compare
PP_3621 +0.4 1.6 vanillin dehydrogenase, iorA-like component (from data) compare
PP_2718 +0.4 1.1 arsenic resistance transcriptional regulator compare
PP_1415 +0.4 1.5 putative membrane associated enzyme subunit compare
PP_3662 +0.4 2.0 conserved protein of unknown function compare
PP_5140 +0.4 0.8 Transcriptional regulator, MerR family compare
PP_0135 +0.4 1.7 conserved exported protein of unknown function compare
PP_0703 +0.4 1.5 putative Transmembrane sensor compare
PP_3483 +0.4 2.1 putative Type II secretion system protein compare
PP_3357 +0.4 1.5 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_3441 +0.4 2.2 conserved protein of unknown function compare
PP_5505 +0.4 1.4 conserved transmembrane protein of unknown function compare
PP_5488 +0.4 1.7 conserved protein of unknown function compare
PP_1466 +0.4 1.5 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2998 +0.4 1.8 2-dehydropantoate 2-reductase compare
PP_3589 +0.4 1.6 serine:H+ symport permease, threonine-insensitive compare
PP_3512 +0.4 1.4 conserved membrane protein of unknown function compare
PP_4427 +0.4 1.5 Amino acid ABC transporter, permease protein compare
PP_1722 +0.4 2.2 ABC transporter, ATP-binding protein compare
PP_0298 +0.4 1.9 AraC-family transcriptional regulator compare
PP_2640 +0.4 1.1 Acetyltransferase, GNAT family compare
PP_1562 +0.4 0.9 putative Phage terminase, small subunit compare
PP_3162 +0.4 1.4 benzoate 1,2-dioxygenase subunit beta compare
PP_2458 +0.4 2.3 ribokinase compare
PP_5188 +0.4 1.7 putative transcriptional regulator (AsnC/Lrp family) compare
PP_5619 +0.4 1.2 protein of unknown function compare
PP_4454 +0.4 2.5 putative Opine ABC transporter, permease protein compare
PP_5671 +0.4 1.3 conserved protein of unknown function compare
PP_3684 +0.4 1.4 conserved protein of unknown function compare
PP_1501 +0.4 1.3 conserved protein of unknown function compare
PP_2094 +0.4 2.2 putative Nitrate-binding protein NasS compare
PP_2179 +0.4 1.5 glutamine amidotransferase compare
PP_5621 +0.4 0.5 protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms