Experiment set24IT082 for Pseudomonas putida KT2440

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -7.4 -8.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_1468 -6.0 -2.9 Tyrosine recombinase XerD compare
PP_1778 -5.5 -9.1 Lipopolysaccharide ABC export system, permease protein compare
PP_1898 -5.4 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_0401 -5.4 -3.4 Ribosomal RNA small subunit methyltransferase A compare
PP_3766 -5.2 -3.1 Lactoylglutathione lyase compare
PP_0164 -5.2 -8.6 conserved protein of unknown function compare
PP_4701 -4.7 -1.1 glucose-6-phosphate isomerase compare
PP_1734 -4.6 -3.2 Probable septum site-determining protein MinC compare
PP_5701 -4.6 -2.3 conserved protein of unknown function compare
PP_4517 -4.6 -2.2 conserved protein of unknown function compare
PP_4271 -4.5 -1.1 conserved protein of unknown function compare
PP_t12 -4.5 -1.1 tRNA-Thr compare
PP_5185 -4.4 -6.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4902 -4.4 -3.0 Oligoribonuclease compare
PP_0184 -4.2 -2.9 Argininosuccinate lyase compare
PP_2581 -4.0 -1.3 conserved protein of unknown function compare
PP_1088 -3.9 -11.5 Argininosuccinate synthase compare
PP_1097 -3.9 -1.3 Methionine--tRNA ligase compare
PP_0406 -3.8 -2.6 Nucleotidyltransferase family protein compare
PP_4937 -3.7 -5.5 toluene tolerance protein compare
PP_0195 -3.6 -1.5 conserved protein of unknown function compare
PP_0119 -3.6 -3.8 putative zinc uptake regulation protein ZUR compare
PP_2903 -3.5 -1.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4296 -3.5 -1.6 conserved exported protein of unknown function compare
PP_1493 -3.5 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5309 -3.4 -6.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1410 -3.4 -1.4 conserved protein of unknown function compare
PP_1763 -3.3 -2.9 putative oxidoreductase compare
PP_4008 -3.2 -8.3 ATP-dependent serine protease compare
PP_5289 -3.1 -3.9 Acetylglutamate kinase compare
PP_3946 -3.1 -1.4 HTH-type transcriptional repressor NicR compare
PP_0396 -3.0 -9.1 conserved protein of unknown function compare
PP_2378 -3.0 -2.1 Fe/S biogenesis protein NfuA compare
PP_1198 -3.0 -3.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0547 -2.9 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4122 -2.9 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0022 -2.8 -1.2 hypothetical protein compare
PP_0395 -2.8 -8.7 putative type IV piliation protein compare
PP_3810 -2.8 -2.0 conserved protein of unknown function compare
PP_1994 -2.8 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_0888 -2.8 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_5327 -2.7 -1.9 putative phosphate ABC transporter, permease subunit compare
PP_5652 -2.7 -1.5 conserved protein of unknown function, phage origin compare
PP_4004 -2.7 -4.1 DNA translocase FtsK compare
PP_4726 -2.7 -2.3 Chaperone protein DnaJ compare
PP_1779 -2.6 -5.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5328 -2.6 -1.8 putative phosphate transport system permease protein compare
PP_4058 -2.6 -7.3 1,4-alpha-glucan branching enzyme compare
PP_4120 -2.6 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_2215 -2.5 -2.5 acetyl-CoA acetyltransferase compare
PP_4546 -2.5 -1.7 ATP-dependent helicase HrpA compare
PP_0900 -2.5 -1.7 PAP2 family protein compare
PP_4129 -2.5 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5508 -2.5 -1.3 conserved protein of unknown function compare
PP_4942 -2.5 -2.6 conserved protein of unknown function compare
PP_0276 -2.4 -1.2 Transcriptional regulator, Cro/CI family compare
PP_5582 -2.4 -1.4 conserved protein of unknown function compare
PP_4213 -2.4 -3.1 putative dipeptidase compare
PP_5045 -2.3 -3.4 tRNA sulfurtransferase compare
PP_1629 -2.3 -4.7 Protein RecA compare
PP_4342 -2.3 -3.3 flagellar synthesis regulator, putative ATPase compare
PP_4131 -2.3 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_4261 -2.3 -4.4 cation-transporting P-type ATPase compare
PP_4383 -2.2 -2.6 Flagellar P-ring protein compare
PP_1217 -2.2 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3938 -2.2 -1.7 conserved protein of unknown function compare
PP_4941 -2.2 -5.6 conserved exported protein of unknown function compare
PP_1164 -2.2 -2.2 Transcriptional regulator, LysR family compare
PP_0513 -2.1 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4369 -2.1 -4.6 Flagellar M-ring protein compare
PP_1355 -2.1 -5.7 Muropeptide permease AmpG compare
PP_4375 -2.1 -4.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_3484 -2.1 -3.2 Response regulator receiver protein compare
PP_2414 -2.1 -1.1 conserved exported protein of unknown function compare
PP_1346 -2.1 -3.0 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4785 -2.1 -3.9 conserved exported protein of unknown function compare
PP_4370 -2.1 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_0937 -2.1 -4.6 endoribonuclease G (RNAse G) compare
PP_5445 -2.1 -1.5 conserved protein of unknown function compare
PP_0405 -2.1 -6.1 conserved protein of unknown function compare
PP_5232 -2.0 -2.4 conserved protein of unknown function compare
PP_4874 -2.0 -0.9 50S ribosomal protein L9 compare
PP_4358 -2.0 -4.1 flagellar synthesis, switching and energizing component compare
PP_5198 -2.0 -2.3 conserved protein of unknown function compare
PP_1764 -2.0 -2.6 Phosphoglycolate phosphatase 2 compare
PP_0435 -2.0 -5.8 Peptidase, M23/M37 family compare
PP_5017 -2.0 -1.1 Sec-independent protein translocase protein TatB compare
PP_0218 -2.0 -4.8 Sensory box protein compare
PP_4895 -1.9 -1.3 tRNA dimethylallyltransferase compare
PP_5337 -1.9 -3.6 LysR family transcriptional regulator compare
PP_1318 -1.9 -3.8 Cytochrome b compare
PP_2121 -1.9 -1.6 putative Lipoprotein compare
PP_1036 -1.9 -4.9 membrane-bound lytic murein transglycosylase F compare
PP_1428 -1.9 -1.7 Sigma factor AlgU negative regulatory protein compare
PP_5270 -1.9 -3.5 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4124 -1.8 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_4396 -1.8 -2.5 conserved protein of unknown function compare
PP_4994 -1.8 -2.4 conserved protein of unknown function compare
PP_0957 -1.8 -1.8 D-arabinose 5-phosphate isomerase compare
PP_3999 -1.8 -5.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4362 -1.8 -2.1 conserved protein of unknown function compare
PP_4532 -1.8 -1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4130 -1.8 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4993 -1.8 -3.2 Glutathione synthetase compare
PP_5039 -1.8 -1.5 conserved protein of unknown function compare
PP_4808 -1.8 -1.5 23S rRNA m3psi1915 methyltransferase compare
PP_0512 -1.7 -2.3 hypothetical protein compare
PP_1836 -1.7 -3.2 putative metal transporter, ZIP family compare
PP_2027 -1.7 -3.6 conserved exported protein of unknown function compare
PP_4696 -1.7 -3.1 Nitrogen regulation protein NR(I) compare
PP_0397 -1.7 -6.9 protein kinase compare
PP_5469 -1.7 -2.0 putative SAM-dependent methyltransferase compare
PP_4700 -1.7 -1.2 pantothenate synthetase compare
PP_4354 -1.7 -2.1 flagellar export apparatus subunit compare
PP_1317 -1.7 -3.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1344 -1.7 -1.7 conserved protein of unknown function compare
PP_4126 -1.7 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_0683 -1.7 -1.9 conserved protein of unknown function compare
PP_4337 -1.7 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2847 -1.7 -1.5 Urease accessory protein UreJ compare
PP_4355 -1.6 -1.2 flagellar export apparatus subunit compare
PP_1702 -1.6 -3.0 Recombination-associated protein RdgC compare
PP_4121 -1.6 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_2217 -1.6 -1.9 enoyl-CoA hydratase compare
PP_2336 -1.6 -1.1 aconitate hydratase 1 compare
PP_1912 -1.6 -3.0 Phosphate acyltransferase compare
PP_1826 -1.6 -2.1 Hydrolase, isochorismatase family compare
PP_0232 -1.6 -1.2 ATP-binding taurine transporter subunit compare
PP_1224 -1.6 -4.4 periplasmic subunit of the TolQRA transport system compare
PP_5145 -1.6 -9.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3770 -1.5 -2.9 conserved protein of unknown function compare
PP_1232 -1.5 -4.4 conserved exported protein of unknown function compare
PP_3318 -1.5 -1.7 conserved protein of unknown function compare
PP_4811 -1.5 -2.6 Gamma-glutamyl phosphate reductase compare
PP_5717 -1.5 -1.5 conserved protein of unknown function compare
PP_4824 -1.5 -5.2 Sensor histidine kinase/response regulator compare
PP_2379 -1.5 -2.6 putative cytochrome oxidase biogenesis protein compare
PP_1999 -1.5 -0.7 membrane protein required for colicin V production compare
PP_0914 -1.5 -4.2 GGDEF domain protein compare
PP_0948 -1.5 -1.2 Phosphocarrier protein HPr compare
PP_4880 -1.5 -6.0 exoribonuclease R compare
PP_2370 -1.5 -1.6 conserved protein of unknown function compare
PP_5350 -1.4 -2.0 Transcriptional regulator, RpiR family compare
PP_2334 -1.4 -2.5 2-methylisocitrate lyase compare
PP_4332 -1.4 -3.2 Chemotaxis protein CheW compare
PP_0794 -1.4 -2.8 1-phosphofructokinase monomer compare
PP_2107 -1.4 -1.2 conserved protein of unknown function compare
PP_0065 -1.4 -2.2 NAD-binding component of TrK potassium transporter compare
PP_5216 -1.4 -1.5 exopolyphosphatase compare
PP_4136 -1.4 -1.1 Transcriptional regulator, LuxR family compare
PP_0123 -1.4 -4.9 DNA polymerase I, 5 compare
PP_4804 -1.4 -1.4 RlpA-like lipoprotein compare
PP_1770 -1.4 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4379 -1.4 -1.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1319 -1.4 -3.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4944 -1.4 -2.5 Carbamoyltransferase compare
PP_4365 -1.4 -2.6 Flagellar protein FliJ compare
PP_4367 -1.4 -3.6 Flagellar assembly protein FliH compare
PP_2496 -1.4 -3.1 conserved protein of unknown function compare
PP_2568 -1.4 -1.1 Ring-cleaving dioxygenase compare
PP_2328 -1.4 -2.6 Phosphoadenosine phosphosulfate reductase compare
PP_0434 -1.4 -2.2 Anhydro-N-acetylmuramic acid kinase compare
PP_4381 -1.4 -5.4 Flagellar hook-associated protein FlgK compare
PP_5338 -1.4 -2.2 aspartate ammonia-lyase compare
PP_5146 -1.4 -3.5 RNA pyrophosphohydrolase compare
PP_t29 -1.4 -1.4 tRNA-Ala compare
PP_4262 -1.4 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5084 -1.4 -4.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1001 -1.4 -1.8 arginine deiminase compare
PP_4875 -1.4 -2.9 conserved membrane protein of unknown function compare
PP_2750 -1.3 -1.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3715 -1.3 -2.8 Muconate cycloisomerase 1 compare
PP_4394 -1.3 -3.0 flagella basal body P-ring formation protein compare
PP_0048 -1.3 -1.0 conserved protein of unknown function compare
PP_4551 -1.3 -4.1 Hydrolase, alpha/beta fold family compare
PP_4204 -1.3 -2.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2433 -1.3 -1.8 conserved protein of unknown function compare
PP_1774 -1.3 -1.7 conserved exported protein of unknown function compare
PP_0872 -1.3 -3.0 Peptide chain release factor 3 compare
PP_0610 -1.3 -2.5 conserved exported protein of unknown function compare
PP_4341 -1.3 -4.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0801 -1.3 -1.0 conserved exported protein of unknown function compare
PP_4366 -1.3 -5.2 flagellum-specific ATP synthase compare
PP_5495 -1.3 -1.1 protein of unknown function compare
PP_4961 -1.3 -1.5 putative Lipoprotein compare
PP_4964 -1.3 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4196 -1.3 -1.3 conserved exported protein of unknown function compare
PP_1215 -1.2 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0984 -1.2 -1.8 conserved membrane protein of unknown function compare
PP_2302 -1.2 -2.4 DNA-binding, ATP-dependent protease compare
PP_5201 -1.2 -1.9 conserved protein of unknown function, UPF0149 family compare
PP_4214 -1.2 -2.5 pyoverdine biosynthesis related protein compare
PP_2848 -1.2 -1.8 urease accessory protein compare
PP_1729 -1.2 -1.5 conserved protein of unknown function compare
PP_5658 -1.2 -1.4 protein of unknown function compare
PP_0846 -1.2 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_3094 -1.2 -1.5 conserved exported protein of unknown function compare
PP_0393 -1.2 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5600 -1.2 -1.2 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in soil experiments

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs across organisms